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README.md
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# Dataset Card for Maize and Arabidopsis gene expression
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Plant Gene expression data used for benchmarking sequence to gene expression prediction ML models.
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## Dataset Details
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### Dataset Description
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All tasks are split by 80% train, 10% validation, and 10% test.
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- **Curated by:** Taylor Ferebee, Travis Wrightsman, Jingjing Zhai, Aaron Gokaslan, Volodymyr Kuleshov, Edward S. Buckler
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- **
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- **Language(s) (NLP):** [More Information Needed]
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- **License:** MIT
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### Dataset Sources
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- **Repository:** [https://github.com/maize-genetics/expression-survey]
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- **Paper:** PLExBench: A benchmarking suite for predicting gene expression in plants
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## Dataset Structure
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dataset
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genomes/
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Arabidopsis_thaliana/
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annotation.fa
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ath.gff
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Zea_mays/
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annotation.fa
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ath.gff
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tasks/
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species-task-tissue/
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train.tsv
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validate.tsv
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test.tsv
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```
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### Curation Rationale
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Taylor Ferebee (tf259@cornell.edu)
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## Dataset Card Contact
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Taylor Ferebee (tf259@cornell.edu)
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# Dataset Card for Maize and Arabidopsis gene expression
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Plant Gene expression data used for benchmarking sequence to gene expression prediction ML models.
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### Dataset Description
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```
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All tasks are split by 80% train, 10% validation, and 10% test.
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## Dataset Structure
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```
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dataset
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genomes/
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Arabidopsis_thaliana/
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annotation.fa
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ath.gff
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Zea_mays/
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annotation.fa
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ath.gff
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tasks/
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species-task-tissue/
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train.tsv
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validate.tsv
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test.tsv
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```
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- **Curated by:** Taylor Ferebee, Travis Wrightsman, Jingjing Zhai, Aaron Gokaslan, Volodymyr Kuleshov, Edward S. Buckler
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- **Repository:** [https://github.com/maize-genetics/expression-survey]
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- **Paper:** PLExBench: A benchmarking suite for predicting gene expression in plants
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- **License:** MIT
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### Dataset Sources
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### Curation Rationale
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Taylor Ferebee (tf259@cornell.edu)
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## Dataset Card Contact
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Taylor Ferebee (tf259@cornell.edu), Cinta Romay, Edward S. Buckler
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