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"""segmentation.py: Toolkit for Generation of Instance Segmentation Material""" |
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import sys |
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import os |
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from os.path import join, exists |
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import json |
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from math import dist |
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from loader import read_pascal_voc, read_labelme, write_labelme, load_classes_ports |
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from utils import transform, associated_keypoints, overlap |
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import cv2 |
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import numpy as np |
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__author__ = "Amit Kumar Roy" |
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__copyright__ = "Copyright 2022-2023, DFKI" |
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__credits__ = ["Amit Kumar Roy", "Johannes Bayer"] |
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__license__ = "CC" |
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__version__ = "0.0.1" |
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__email__ = "johannes.bayer@dfki.de" |
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__status__ = "Prototype" |
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def binary_to_multi_seg_map(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str, |
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color_map: dict) -> None: |
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"""Creates a Multi Class Segmentation File from a Binary Segmentation File and an Coarse Instance Polygon File""" |
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bin_seg_map = cv2.imread(join(drafter, "segmentation", f"{sample}.{suffix}")) |
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bin_seg_map[np.all(bin_seg_map <= (10, 10, 10), axis=-1)] = (0, 0, 0) |
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shape_mask = np.ones(bin_seg_map.shape, dtype=np.uint8)*255 |
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geo_data = read_labelme(join(drafter, source_folder, f"{sample}.json")) |
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for shape in sorted(geo_data["polygons"], key=lambda shape: -(shape['bbox']['xmax']-shape['bbox']['xmin']) * |
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(shape['bbox']['ymax']-shape['bbox']['ymin'])): |
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cv2.fillPoly(shape_mask, |
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pts=[np.array(shape["points"], dtype=np.int32)], |
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color=color_map[shape["class"]]) |
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multi_seg_map = cv2.bitwise_and(cv2.bitwise_not(bin_seg_map), shape_mask) |
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for point in geo_data['points']: |
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if point['class'] == "connector": |
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x, y = point['points'] |
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cv2.line(multi_seg_map, (int(x-20), int(y-20)), (int(x+20), int(y+20)), (255, 255, 255), 2) |
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cv2.line(multi_seg_map, (int(x-20), int(y+20)), (int(x+20), int(y-20)), (255, 255, 255), 2) |
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cv2.imwrite(join(drafter, target_folder, f"{sample}.png"), multi_seg_map) |
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def generate_keypoints(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str, |
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keep_polygons: bool = True, margin=3) -> None: |
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"""Generates Connector Keypoints, optionally discarding existing polygons""" |
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bin_seg_map = cv2.imread(join(drafter, "segmentation", f"{sample}.{suffix}"), cv2.IMREAD_GRAYSCALE) |
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_, bin_seg_map = cv2.threshold(bin_seg_map, 127, 255, cv2.THRESH_BINARY_INV) |
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geo_data = read_labelme(join(drafter, source_folder, f"{sample}.json")) |
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detector_params = cv2.SimpleBlobDetector_Params() |
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detector_params.minArea = 3 |
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detector_params.minDistBetweenBlobs = 3 |
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detector_params.minThreshold = 10 |
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detector_params.maxThreshold = 255 |
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detector_params.blobColor = 255 |
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detector_params.filterByArea = False |
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detector_params.filterByCircularity = False |
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detector_params.filterByConvexity = False |
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detector_params.filterByInertia = False |
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detector = cv2.SimpleBlobDetector_create(detector_params) |
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kernel = cv2.getStructuringElement(cv2.MORPH_RECT, (5, 5)) |
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for nbr, shape in enumerate(geo_data["polygons"]): |
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if shape['class'] == "text": |
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cv2.fillPoly(bin_seg_map, pts=[np.array(shape["points"], dtype=np.int32)], color=[0, 0, 0]) |
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for nbr, shape in enumerate(geo_data["polygons"]): |
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shape['group'] = nbr |
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if shape['class'] != "text" and shape['class'] != "wire": |
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x_min = max(int(shape['bbox']['xmin'])-margin, 0) |
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x_max = min(int(shape['bbox']['xmax'])+margin, bin_seg_map.shape[1]) |
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y_min = max(int(shape['bbox']['ymin'])-margin, 0) |
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y_max = min(int(shape['bbox']['ymax'])+margin, bin_seg_map.shape[0]) |
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cropout = bin_seg_map[y_min:y_max, x_min:x_max] |
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shape_mask = np.zeros((y_max-y_min, x_max-x_min), dtype=np.uint8) |
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cv2.polylines(shape_mask, pts=[np.array(shape["points"]-np.array([[x_min, y_min]]), dtype=np.int32)], |
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isClosed=True, color=[255, 255, 255], thickness=2) |
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intersect_map = cv2.bitwise_and(cropout, shape_mask) |
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keypoints = detector.detect(intersect_map) |
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geo_data['points'] += [{'class': "connector", 'points': (keypoint.pt[0]+x_min, keypoint.pt[1]+y_min), |
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'group': nbr} for keypoint in keypoints] |
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for shape in geo_data["polygons"]: |
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if shape['class'] == "wire": |
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wire_connectors = [point["points"] for point in geo_data['points'] |
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if cv2.pointPolygonTest(np.array(shape["points"]), np.array(point['points']), True) > -4] |
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if len(wire_connectors) != 2: |
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print(f" Anomaly Wire Connector Count: {len(wire_connectors)} -> {shape['points'][0]}") |
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geo_data['points'] += [{'class': "connector", 'points': (point[0], point[1]), |
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'group': shape['group']} for point in wire_connectors] |
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geo_data['polygons'] = geo_data['polygons'] if keep_polygons else [] |
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write_labelme(geo_data, join(drafter, target_folder, f"{sample}.json")) |
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def generate_wires(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str) -> None: |
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"""Generates wire polygons""" |
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geo_data = read_labelme(join(drafter, source_folder, f"{sample}.json")) |
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bin_seg_map = cv2.imread(join(drafter, "segmentation", f"{sample}.{suffix}"), cv2.IMREAD_GRAYSCALE) |
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_, bin_seg_map = cv2.threshold(bin_seg_map, 127, 255, cv2.THRESH_BINARY_INV) |
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for nbr, shape in enumerate(geo_data["polygons"]): |
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cv2.fillPoly(bin_seg_map, pts=[np.array(shape["points"], dtype=np.int32)], color=[0, 0, 0]) |
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cntrs = cv2.findContours(bin_seg_map, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE) |
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contours = cntrs[0] if len(cntrs) == 2 else cntrs[1] |
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for contour in contours: |
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if len(contour) > 3: |
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geo_data['polygons'] += [{'class': "wire", 'points': np.squeeze(contour).tolist(), 'group': None}] |
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write_labelme(geo_data, join(drafter, target_folder, f"{sample}.json")) |
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def pascalvoc_to_labelme(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str, |
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keep_existing_json: bool = True) -> None: |
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"""Converts a Bounding Box (Rectangle) Annotation File to an Instance Mask (Polygon) File |
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Has no Effect in its default Configuration on a |
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consistently populated Dataset.""" |
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if keep_existing_json and exists(join(drafter, target_folder, f"{sample}.json")): |
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print(" -> SKIP (already exists)") |
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return None |
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xml_data = read_pascal_voc(join(drafter, source_folder, f"{sample}.xml")) |
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xml_data['points'] = [] |
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xml_data['img_path'] = join("..", "segmentation", f"{sample}.{suffix}") |
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xml_data['polygons'] = [{'class': bbox['class'], 'group': None, |
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'points': [[bbox['xmin'], bbox['ymin']], |
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[bbox['xmax'], bbox['ymin']], |
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[bbox['xmax'], bbox['ymax']], |
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[bbox['xmin'], bbox['ymax']]]} |
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for bbox in xml_data['bboxes']] |
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write_labelme(xml_data, join(drafter, target_folder, f"{sample}.json")) |
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def labelme_raw_image(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str) -> None: |
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"""Resets the Source Images of a LabelME file to the Rwa Image""" |
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geo_data = read_labelme(join(drafter, source_folder, f"{sample}.json")) |
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geo_data['img_path'] = join("..", "images", f"{sample}.{suffix}") |
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write_labelme(geo_data, join(drafter, target_folder, f"{sample}.json")) |
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def convex_hull(thresh_img: np.ndarray, polygon: np.ndarray) -> list: |
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"""Calculates the Convex Hull of a Binary Image, falling back to Polygon""" |
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cntrs = cv2.findContours(thresh_img, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE) |
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cntrs = cntrs[0] if len(cntrs) == 2 else cntrs[1] |
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good_contours = [contour for contour in cntrs if cv2.contourArea(contour) > 10] |
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if good_contours: |
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contours_combined = np.vstack(good_contours) |
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hull = cv2.convexHull(contours_combined) |
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return np.squeeze(hull).tolist() |
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return polygon.tolist() |
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def refine_polygons(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str, |
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classes_discontinuous: list) -> None: |
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"""Main Function for Polygon Refinement""" |
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geo_data = read_labelme(join(drafter, source_folder, f"{sample}.json")) |
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img = cv2.imread(join(drafter, "segmentation", f"{sample}.{suffix}")) |
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gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY) |
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(_, img) = cv2.threshold(gray, 1, 255, cv2.THRESH_BINARY_INV | cv2.THRESH_OTSU) |
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background_mask = np.zeros(img.shape, dtype=np.uint8) |
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for shape in geo_data['polygons']: |
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if shape["class"] != "wire": |
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polygon = np.array(shape["points"], dtype=np.int32) |
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mask_single_components = cv2.fillPoly(background_mask, pts=[polygon], color=(255, 255, 255)) |
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bitwise_and_result = cv2.bitwise_and(img, mask_single_components) |
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background_mask = np.zeros(img.shape, dtype=np.uint8) |
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if shape["class"] in classes_discontinuous: |
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hull_list = convex_hull(bitwise_and_result, polygon) |
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shape['points'] = hull_list |
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else: |
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contours, _ = cv2.findContours(bitwise_and_result, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE) |
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if contours: |
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contour = max(contours, key=len) |
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contour = np.squeeze(contour) |
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contour_list = contour.tolist() |
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shape['points'] = contour_list |
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else: |
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print(f" !!! WARNING: Empty Polygon: {shape['group']} !!!") |
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write_labelme(geo_data, join(drafter, target_folder, f"{sample}.json")) |
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def find_closest_points(list1, list2): |
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reordered_list2 = [] |
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for x1, y1 in list1: |
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min_distance = float("inf") |
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min_point = None |
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for x2, y2 in list2: |
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distance = math.sqrt((x2 - x1)**2 + (y2 - y1)**2) |
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if distance < min_distance: |
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min_distance = distance |
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min_point = (x2, y2) |
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reordered_list2.append(min_point) |
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return [list(row) for row in reordered_list2] |
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def connector_type_assignment(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str) -> None: |
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"""Connector Point to Port Type Assignment by Geometric Transformation Matching""" |
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bboxes = read_pascal_voc(join(drafter, "annotations", f"{sample}.xml")) |
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instances = read_labelme(join(drafter, source_folder, f"{sample}.json")) |
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classes_ports = load_classes_ports() |
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bad_connector_symbols = 0 |
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for shape in instances["polygons"]: |
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if shape["class"] in classes_ports.keys(): |
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connectors = associated_keypoints(instances, shape) |
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cls_ports = classes_ports[shape["class"]] |
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bboxes_match = [bbox for bbox in bboxes['bboxes'] |
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if overlap(bbox, shape["bbox"]) and bbox['class'] == shape['class']] |
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if len(cls_ports) != len(connectors): |
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print(f" Bad Connector Count: {shape['class']} {shape['points'][0]} -> {len(cls_ports)} vs. {len(connectors)}") |
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bad_connector_symbols += 1 |
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if len(bboxes_match) != 1: |
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print(f" No BB for Polygon: {shape['class']} {shape['points'][0]}") |
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continue |
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if bboxes_match[0]["rotation"] is None: |
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print(f" Missing Rotation in BB: {shape['class']} {shape['points'][0]}") |
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bboxes_match[0]["rotation"] = 0 |
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cls_ports_transformed = [transform(port, bboxes_match[0]) for port in cls_ports] |
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for con in connectors: |
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closest = sorted(cls_ports_transformed, |
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key=lambda cls_port: dist(cls_port['position'], con['points']))[0] |
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con['class'] = f"connector.{closest['name']}" |
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shape['rotation'] = bboxes_match[0]['rotation'] |
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shape['text'] = bboxes_match[0]['text'] |
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write_labelme(instances, join(drafter, target_folder, f"{sample}.json")) |
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return bad_connector_symbols |
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def pipeline(drafter: str, sample: str, suffix: str, source_folder: str, target_folder: str, **kwargs) -> None: |
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"""Standard Workflow""" |
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generate_wires(drafter, sample, suffix, source_folder, target_folder) |
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generate_keypoints(drafter, sample, suffix, target_folder, target_folder) |
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refine_polygons(drafter, sample, suffix, target_folder, target_folder, kwargs["classes_discontinuous"]) |
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labelme_raw_image(drafter, sample, suffix, target_folder, target_folder) |
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return connector_type_assignment(drafter, sample, suffix, target_folder, target_folder) |
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def execute(function: callable, source_folder: str, target_folder: str, drafter: str, info_msg: str, **kwargs): |
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"""Walks through the Dataset and applies the specified Function""" |
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bad_connector_symbols = 0 |
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for drafter_dir in [f"drafter_{drafter}"] if drafter else sorted(next(os.walk('.'))[1]): |
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if drafter_dir.startswith("drafter_"): |
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if not os.path.isdir(join(drafter_dir, target_folder)): |
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os.mkdir(join(drafter_dir, target_folder)) |
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for sample_raw in sorted(next(os.walk(join(drafter_dir, "segmentation")))[2]): |
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sample, suffix = sample_raw.split(".") |
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print(f"{info_msg} for: {drafter_dir} -> {sample}") |
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res = function(drafter_dir, sample, suffix, source_folder, target_folder, **kwargs) |
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if res is not None: |
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bad_connector_symbols += res |
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print(f"Overall Symbols with incorrect Connector Count: {bad_connector_symbols}") |
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if __name__ == "__main__": |
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with open("classes_discontinuous.json") as f: |
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classes_discontinuous = json.load(f) |
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with open('classes_color.json') as f: |
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color_map = json.load(f) |
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commands = {"transform": [pascalvoc_to_labelme, "annotations", "instances", "Transforming BBs -> Masks", {}], |
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"wire": [generate_wires, "instances", "wires", "Generating Wires", {}], |
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"keypoint": [generate_keypoints, "instances", "keypoints", "Generating Keypoints", {}], |
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"create": [binary_to_multi_seg_map, "instances", "segmentation_multi_class", |
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"Generating Multi-Class Segmentation Map", {"color_map": color_map}], |
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"refine": [refine_polygons, "instances", "instances_refined", "Refining Polygons", |
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{"classes_discontinuous": classes_discontinuous}], |
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"reset": [labelme_raw_image, "instances_refined", "instances_refined", |
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"Resetting Source Image", {}], |
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"assign": [connector_type_assignment, "instances_refined", "instances_refined", |
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"Assigning Connector Types", {}], |
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"pipeline": [pipeline, "instances", "instances_refined", "Processing", |
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{"classes_discontinuous": classes_discontinuous}]} |
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if len(sys.argv) > 1 and sys.argv[1] in commands: |
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fun, source, target, info, paras = commands[sys.argv[1]] |
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drafter = sys.argv[2] if len(sys.argv) > 2 else "" |
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target = sys.argv[3] if len(sys.argv) > 3 else target |
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source = sys.argv[4] if len(sys.argv) > 4 else source |
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execute(fun, source, target, drafter, info, **paras) |
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else: |
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print(f"Invalid command. Must be one of: {list(commands.keys())}") |
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