Talk:Green fluorescent protein

message: GFP is also lurid fun
fluorescent aquarium fish
transfectable FP of every color are findable online  Blue Green Red are more affordable  Yellow is newer — Preceding unsigned comment added by 129.101.7.57 (talk • contribs) 05:27, 7 October 2004
how come this page lacks scientific references?  for a subject like GFP, one could find endless supplies of papers...— Preceding unsigned comment added by 142.150.56.131 (talk • contribs) 15:27, 8 July 2006
Since 69.123.68.35 keeps trying to add a Chalfie reference I decided to add a bit of history, including the specific contributions of 
the 4 main players in the development of GFP.  I also fleshed out some detail on the specific mutants that led to EGFP. -AH  — Preceding unsigned comment added by AndrewHires (talk • contribs) 00:28, 8 February 2007
This is an interesting article with reliable sources
SebaSebaBukh (talk) 21:40, 9 September 2018 (UTC)
thread_title:  Comments 

message: Does someone think he/she could discuss how insertion of GFP into a genome/gene/"gene encoding for a protein" works? --Cyberman (talk) 19:31, 24 June 2010 (UTC)
thread_title:  GFP gene insertion 

message: GFP is not a unique structure in fact it has a very typical beta barrel structure seen frequently in membrane proteins such as OmpA. I have corrected that statement.
Nick
Nick Hayward (talk) 14:34, 21 January 2008 (UTC)
thread_title:  GFP Structure 

message: In short, whats it used for? Like many scientific and historical articles on wikipedia, this one goes of at a tangent, without actually describing its importance. You know, scientists don't wear lab coats and drink coffee into the night just to discover a protein they do it for a reward, or its use in the science community. And that reward/use is....? Anyone care to help out?Tourskin 23:47, 17 February 2007 (UTC)
replies: text: Please be bold; if you screw up, the current digressions remain in the archive and may be mined for useful and encyclopedic information. - Eldereft (cont.) 19:18, 5 February 2009 (UTC)
thread_title:  Uses 

message: mGFP should probably be merged as it is only a slight modification of GFP and it may be more informative to have the mGFP content in the main GFP page.  It may be a bit confusing though, as m before GFP (or RFP or CFP, etc) more commonly refers to monomeric versions.  Any other votes? 66.75.152.122 16:25, 7 May 2007 (UTC)
replies: text: Looks like a good merge candidate to me. -- MarcoTolo 20:22, 10 May 2007 (UTC)

text: Merged! AndrewHires 01:36, 5 July 2007 (UTC)
thread_title: Merge

message: Is the gene itself fluorsecent, or is it only the protein product of the gene that is.
Meaning, if one were to light UV light on a concentration of plasmids containing this gene (but with no nutrient such as arabinose added and no bacteria or other organism), would it be fluorescent? (green?) —Preceding unsigned comment added by 62.107.66.155 (talk • contribs) 15:05, 10 May 2007 (UTC)
replies: text: The protein (the green fluorescent protein) is the light-reactive product of the gfp gene. Thus, no, a plasmid containing the gfp gene would not, by itself, fluoresce in the green portion of the visible spectrum. -- MarcoTolo 20:20, 10 May 2007 (UTC)
thread_title: A question

message: A. victorias GFP is excited at 395 nm and 470 nm and emmits light at 509 nm (Maximums). Source: http://public-1.cryst.bbk.ac.uk/PPS2/projects/jonda/chromoph.htm --David Munch 12:30, 10 June 2007 (UTC)
replies: text: Primary references are preferred over webpages and the existing references already cover this aspect of GFP. AndrewHires 01:35, 5 July 2007 (UTC)
thread_title:  Emmision and excitation spectra 

message: The link "• Interactive Java applet demonstrating the chemistry behind the formation of the GFP fluorophore." does not work anymore. I wouldn't just remove it, since I dont have time to check up if the link has just changed to something else. --David Munch 20:27, 14 June 2007 (UTC)
replies: text: Fixed link - thanks for the heads-up. -- MarcoTolo 20:34, 14 June 2007 (UTC)
thread_title:  Non working link 

message: As I understand it, residues of the alpha helix react inside the beta barrel to form the fluorophore, so that the final, fluorescent, protein is chemically modified from the original string of amino acids. Any info about this? 141.5.194.4 12:36, 26 June 2007 (UTC)
replies: text: You are correct.  The exact side-chain composition induces particular cyclizations to occur.  The exact chromophores that are created is gone into in some detail in the Green Fluorescent Protein review by Tsien.  Also, papers by Remington on crystallography of various mutants would be a good place to go for greater depth on this issue. AndrewHires 07:17, 4 July 2007 (UTC)
thread_title: Post translational modification of GFP to make it work 

message: GFP and aequorin are totally different proteins (hence the different names). Aequorin is an ion-sensitive indicator, and GFP is (mainly) used to tag individual proteins. There is some GFP history here, and also some good information on the differences between the two proteins and different methods of fluorescent marking in "Molecular Biology of the Cell" (Alberts et al, 4th Ed, 2002). -203.171.67.232 09:38, 10 September 2007 (UTC)
replies: text: GFP and Aequorin were not implied to be the same protein, but perhaps the distinction should have been more clear. Modified it.  That link is bad, correct link added to External links.  I think credit is properly given to all major contributors according to the various reviews, so removed the disputed marking. If someone has additional specific concerns re: history, happy to discuss or add the tag back. AndrewHires 23:54, 17 September 2007 (UTC)
thread_title:  Errors in history section 

message: For all technical purposes the species should be noted as A. aequorea as noted by Osamu Shimomura who is widely credited with discovering GFP.  He notes in Green Fluorescent Protein: Properties, Applications, and Protocols, Second Edition Ch 1 that they are in his opinion the same species.  Furthermore he says that A. forskalea is also the same species.  --Budlight 02:18, 26 October 2007 (UTC)
thread_title: Species

message: Biologicalworld.com has spammed wikipedia like no tomorrow. He is a site of only a few pages and a LOT of adsense. Not much information is given except for "protocols" which are not referenced, and cannot be trusted from a site of that quality. 
check: Links from Wikipedia
The following have been cleaned up:
*en.wikipedia.org/wiki/Plasmid
*en.wikipedia.org/wiki/Gel_electrophoresis
*en.wikipedia.org/wiki/Green_fluorescent_protein
*en.wikipedia.org/wiki/Homology_(biology)
*en.wikipedia.org/wiki/HeLa
*en.wikipedia.org/wiki/Protease
*en.wikipedia.org/wiki/Restriction_enzyme
*en.wikipedia.org/wiki/Petri_dish
*en.wikipedia.org/wiki/Structural_domain
*en.wikipedia.org/wiki/Trypsin
*en.wikipedia.org/wiki/Oligonucleotide
*en.wikipedia.org/wiki/Transmission_electron_microscope
*en.wikipedia.org/wiki/Agar_plate
*en.wikipedia.org/wiki/Calcium_phosphate
*en.wikipedia.org/wiki/Disulfide_bond
*en.wikipedia.org/wiki/Denaturation_(biochemistry)
*en.wikipedia.org/wiki/DNA_ligase
*en.wikipedia.org/wiki/Wild_type
*en.wikipedia.org/wiki/Tissue_culture
*en.wikipedia.org/wiki/Transmission_electron_microscopy
*en.wikipedia.org/wiki/Reporter_gene
*en.wikipedia.org/wiki/Northern_blot 
Sciencetalks (talk)  —Preceding comment was added at 02:48, 4 January 2008 (UTC)
thread_title:  Spamming Wikipedia 

message: My dilemma is my conflict of interest in being involved with the company referenced, but as the information seems relevant I'll take the liberty to boldly edit.  I'm adding a comment in the "GFP in fine art" section to mention that my company produces a GFP fine art piece.  Let me know if you think this is appropriate.  At some point I hope to get a photograph of one of our GFP crystals in the page to demonstrate what sub-surface laser engraved fine art looks like.  —Preceding unsigned comment added by 63.249.110.34 (talk) 03:59, 27 November 2008 (UTC)
replies: text: Some amount of explanation of the reversion would have been educational. —63.249.110.34 (talk) 04:27, 4 December 2008 (UTC)
thread_title:  My Personal Attempt to Spam WP 

message: Here is some references for the new section on GFP in Nature.  I don't have time to fiddle with the formatting right now, if someone wants to insert them in the appropriate manner, it'd be much appreciated.
The serine 65 residue of the GFP chromophore is responsible for the dual peaked excitation spectra of wild type GFP. It is conserved in all three GFP isoforms originally cloned by Prasher. ^ Prasher D, Eckenrode V, Ward W, Prendergast F, Cormier M (1992). "Primary structure of the Aequorea victoria green-fluorescent protein". Gene 111 (2): 229–33. doi:10.1016/0378-1119(92)90691-H. .
Nearly all mutations of this residue consolidate the excitation spectra to a single peak at either 395nm or 480nm. Since a single mutation can make dramatically enhance the 480nm excitation peak,
Heim R, Cubitt AB, Tsien RY. 1995. Nature 373:663–64 Delagrave S, Hawtin RE, Silva CM, Yang MM, Youvan DC. 1995. Bio- Technology 13:151–14 Cormack BP, Valdivia RH, Falkow S.1996. Gene 173:33–38
Further discussion in ^ a b Tsien R (1998). "The green fluorescent protein" (PDF). Annu Rev Biochem 67: 509–44. doi:10.1146/annurev.biochem.67.1.509. , http://tsienlab.ucsd.edu/Publications/Tsien%201998%20Annu.%20Rev.%20Biochem%20-%20GFP.pdf.
The speculations are from a lecture at Janelia Farm. Here is a video of his nobel lecture where he touches on similar points.
http://nobelprize.org/mediaplayer/index.php?id=1070
The population collapse at Friday Harbor is mentioned in this article by Miyawaki in Cell doi:10.1016/j.cell.2008.11.025
AndrewHires (talk) 16:34, 17 December 2008 (UTC)
thread_title: References to add

message: Can someone include which GFP derivatives are subjected to patent rights? Is there any kind of protection on the green and blue naturally occurring GFPs? Is the recombinant GFP (but still with the original amino acidic sequence) expressed in bacterial systems a registered invention?
I think that the GFP model could be a relatively simple and highly informative reference to help understand how far patent rights can reach and be applied to products derived from natural sources. Heathmoor (talk) 17:47, 21 September 2010 (UTC)
thread_title: Patent holding on GFP derivatives

message: forgive my ignorance, but what the hell is "ultraviolet blue light"? it's in the article's first sentence, and the link to the UV page doesn't mention it, and I don't understand how something uv-coloured can be blue-coloured at the same time. 174.6.72.195 (talk) 22:07, 26 April 2012 (UTC)
replies: text: The article originally stated "blue light" and was changed in this edit to "ultraviolet blue light".  I think what is meant here is "blue, violet, or ultraviolet light".  In other words, light with a wavelength less than 475 nm.  I am not sure best how to phrase this, "blue, violet, or ultraviolet light" is a bit awkward. Thoughts? Boghog (talk) 22:34, 26 April 2012 (UTC)
replies: text:  hmm. "when exposed to light in the blue to ultraviolet spectrum"? "when exposed to light in the blue to ultraviolet range"? 174.6.72.195 (talk) 01:18, 27 April 2012 (UTC)
replies: text:  I like your second suggestion and have edited the article accordingly. Boghog (talk) 05:52, 27 April 2012 (UTC)
thread_title: ultraviolet blue light

message: Here's a review I found that has a whole lot of useful info. (available for free on PMC too) I don't have the time to go through it in detail and make use of it but I felt it will be a good resource for those interested in florescent proteins so that they can improve this and other articles.
Cheerio. Staticd (talk) 09:16, 10 January 2013 (UTC)
thread_title:  Useful review 

message: Perhaps this is worth a mention?
dairyreporter.com Buzz-tardis (talk) 07:35, 13 April 2014 (UTC)
thread_title:  GFP icecream 

message: Please could someone put an image of the structure of 4-(p-hydroxybenzylidene)imidazolidin-5-one in the structure section?
Testem (talk) 12:32, 14 November 2014 (UTC)
thread_title:  Image of chromophore 

message: As discussed below in the Applications section, GFP can be inserted onto many genes and used to track large scale domain motions and time dependent co-localizations in proteins by means of FRET. 
Ease of expression has also enabled GFP to act as a prototype for studies of protein and hydration water dynamics using neutron scattering This technique focuses on motions faster than ~1 nanosecond, and by expressing the protein in a perdeuterated state one can isolate the motions of hydration water from those of the protein. 
In fact, it is from the coherent scattering from perdeuterated GFP that has shown collective motions of adjacent chains in the beta barrel at ~1 THz. These motions are thought to be sensitive to local rigidity within proteins, revealing beta structures to be generically more rigid than alpha or disordered proteins.
— Preceding unsigned comment added by Jon33dn (talk • contribs) 23:46, 20 February 2015 (UTC)
thread_title: Suggestion for Dynamics seciton

message: I've started to improve the writing on this article a bit. I've gotten rid of the worst bits (factually and stylistically) for now, intending to do the rest asap. Large sections, particularly in the fluorescence microscopy section, drone on an on without real structure, with very poorly written and confusing sentences. A high-importance article should be a lot better than this. Watch this space. Fgf10 (talk) 18:09, 17 July 2016 (UTC)
thread_title:  Re-write 

message: GFP is no longer considered unique to A. victoria. It turns out that other animals produce GFP, so I've provided the article with new material to reflect this. There may more GFP producers besides copepods and lancelets, so feel free to do more research and add on to the In nature section.  — Preceding unsigned comment added by Systematicist (talk • contribs) 17:44, 13 January 2021 (UTC)
thread_title:  Other organisms express GFP 

message: Am I hallucinating, or does the article as it currently stands not include basic information like approximate MW - just a ball-park figure: is GFP big or small, as proteins go?  Approximately how many amino acids?  How long is the gene, and does it contain non-coding regions, and will it work without them? Answers should refer to the protein as it occurs in nature, and, to the smallest available modified variants.  This information is more important than structural details and probably more important than quantum yields and secondary emission peaks.  It ought to be in the first or second paragraph. The reader should be able to click open the article and know the rough MW range ten seconds later without expending any effort at all.  
Grumpily yours, HandsomeMrToad (talk) 21:05, 16 June 2021 (UTC)
replies: text: OK, I added some info.  Now I feel a little better. HandsomeMrToad (talk) 21:14, 16 June 2021 (UTC)
thread_title:  Basic numerical parameters !!!! 

message: An editor has identified a potential problem with the redirect :Green pig and has thus listed it for discussion. This discussion will occur at Wikipedia:Redirects for discussion/Log/2022 November 17#Green pig until a consensus is reached, and readers of this page are welcome to contribute to the discussion.  Pizzaplayer219TalkContribs 17:40, 17 November 2022 (UTC)
thread_title:  "Green pig" listed at [[Wikipedia:Redirects for discussion|Redirects for discussion]]