Talk:BLAST (biotechnology)

message: anyone have a citation for BLAST being the most highly cited paper of the 1990s? 152.78.196.32 15:14, 28 September 2006 (UTC)
thread_title: Untitled

message: I would like to review an algorithm. However there is no obvious source distribution at http://mitc-openbio.sourceforge.net (well hidden may be?) Instead mitrionics proposed to buy it  —Preceding unsigned comment added by 85.141.206.213 (talk) 15:42, 11 March 2008 (UTC)
thread_title:  Open source? 

message: Would it be fair to say the step 3 is performing a gloabl alignment for each k-letter word from the query sequence against all possible k-letter words?  --Rwcitek (talk) 16:28, 4 September 2008 (UTC)
thread_title:  Step 3: List the possible matching words. 

message: Not five minutes ago, by advanced bioinformatics professor told us that the BLAST program was the most cited reference in the whole os science. What do you think ? XApple (talk) 14:06, 23 September 2008 (UTC)
replies: text: Yes, a far as I know it is true. Each time the algorithm is cited in a publication the authors are supposed to add a reference of the original paper.--Plindenbaum (talk) 17:34, 23 September 2008 (UTC)

text: This is not true. It is only the most cited paper from Journal of Molecular Biology. As far as I know the most quoted paper is still the protein concentration determination method by Lowry. See http://www.jbc.org/content/280/28/e25.full Nicolas Le Novere (talk) 22:20, 29 June 2011 (UTC)
thread_title: Most cited reference in the whole of science

message: I suspect it would probably be good to have some indication of the complexity of the algorithm.  If S-W is O(L2) and there are N comparisons then SW would be O(L2N).  Is the speed up in Blast on the L2 part or the N part or both?  Is there a reference or way to predict the complexity? Pdschloss (talk) 19:35, 13 December 2008 (UTC)
thread_title:  Algorithmic complexity 

message: Is eTBLAST an adaptation of the implementation of BLAST for electronic text?  Or is just the same underlying idea, but a new implementation? 217.237.64.48 (talk) 16:36, 14 February 2012 (UTC)
thread_title:  Relation between eTBLAST and BLAST? 

message: The algorithm has uses of the word "we" which indicate the probable need of copyediting (and that just fixing these occurences of "we" may not be complete.)  Does anyone feel they are good at copyediting algorithms or does anyone want to list other items that need polishing?  RJFJR (talk) 22:35, 14 February 2012 (UTC)
thread_title:  Copyediting 

message: ...redirects to BLAST, but is given a very cursory treatment.  Would it warrant its own page?
Ketil (talk) 08:10, 8 August 2012 (UTC)
thread_title:  PSI-BLAST 

message: In the article, two quotes are given ("guarantee the optimal alignments of the query and database sequences" and "ensured the best performance on accuracy and the most precise results"), however, these are not clearly cited. Is this a mistake or an accepted way of giving quotes? Zpon (talk) 09:33, 25 August 2013 (UTC)
thread_title:  Quotes without citations 

message: Hello fellow Wikipedians,
I have just added archive links to  on BLAST. Please take a moment to review my edit. If necessary, add  after the link to keep me from modifying it. Alternatively, you can add  to keep me off the page altogether. I made the following changes:
*Added archive https://web.archive.org/20071007132448/http://www.sciencewatch.com/july-aug2000/sw_july-aug2000_page3.htm to http://www.sciencewatch.com/july-aug2000/sw_july-aug2000_page3.htm
When you have finished reviewing my changes, please set the checked parameter below to true to let others know.
Cheers. —cyberbot IITalk to my owner:Online 14:51, 18 October 2015 (UTC)
thread_title:  External links modified 

message: The paragraph about KLAST may be commercial speech and it may be out of date. KLAST is hyperlinked to a commercial web site that says the company is defunct. The claim that "Results of KLAST are very similar to BLAST, but KLAST is significantly faster..." requires a technical reference. The text currently has no link to a technical publication and I don't know of any such publication. Jason.Rafe.Miller (talk) 17:41, 29 November 2015 (UTC)
thread_title:  Alternatives to BLAST 

message: The protocol (and the software implementing it, described in BLAST (protocol)), was up and running in the 1980s. The bioinformatics tool began somewhat later, 1990. Both are oldies, and both deserve respect in referencing.
Both have one or more similar-named relatives: MacBLAST for the protocol, the government-funded BioTech open-source software having PSI-BLAST, eTBLAST and KLAST (all three mentioned above).
The protocol article has no tags/HatNotes; this does. 
The protocol article, to which 27 articles link, originated November 2013; the Biotechnology item, to which 48 articles link, originated November 2003. This seems to give the earlier article a possible "primary" status. Per the following Wiki
policy guidelines:
* following the "Redirecting to a primary topic" Einstein-like suggestion, having BLAST redirect to (biotechnology) does not inconvenience current users of the earlier article;
* following the "Primary topic with only one other topic" guideline, a note on top will serve as disambiguation with no need for a formal page. Pi314m (talk) 03:40, 16 July 2019 (UTC)
thread_title:  Disambiguation, biotechnology, protocol