Kaggle competition: Petals to the Metal - Flower Classification on TPU
<SOS> metric: macrofscore Kaggle data source: petals-to-the-metal-flower-classification-on-tpu<prepare_x_and_y>
!pip install -q efficientnet
x = train.drop(labels = ["label"],axis = 1)
 y = train["label"]<split>
print("Tensorflow version " + tf.__version__ )
xtrain, xtest, ytrain, ytest = train_test_split(x,y, test_size = 0.2, random_state = 123)
 xtrain.shape, xtest.shape, ytrain.shape, ytest.shape<data_type_conversions>
AUTO = tf.data.experimental.AUTOTUNE
try:
tpu = tf.distribute.cluster_resolver.TPUClusterResolver()
print('Running on TPU ', tpu.master())
 except ValueError:
tpu = None
if tpu:
tf.config.experimental_connect_to_cluster(tpu)
 tf.tpu.experimental.initialize_tpu_system(tpu)
 strategy = tf.distribute.experimental.TPUStrategy(tpu)
 else:
strategy = tf.distribute.get_strategy()
print("REPLICAS: ", strategy.num_replicas_in_sync)
 GCS_DS_PATH = KaggleDatasets().get_gcs_path()
xtrain = xtrain.astype("float32")/255
xtest = xtest.astype("float32")/255
test = test.astype("float32")/255
ytrain = to_categorical(ytrain, num_classes=10)
 ytest = to_categorical(ytest, num_classes=10 )<choose_model_class>
IMAGE_SIZE = [512, 512]
EPOCHS = 20
BATCH_SIZE = 16 * strategy.num_replicas_in_sync
model = Sequential()
model.add(Conv2D(filters = 32,
kernel_size =(3,3),padding = 'Same', activation ='relu',
input_shape =(28,28,1)))
 model.add(BatchNormalization())
 model.add(Conv2D(filters = 32, kernel_size =(3,3),padding = 'Same', activation ='relu'))
model.add(BatchNormalization())
 model.add(MaxPool2D(pool_size=(2,2)))
 model.add(Dropout(0.25))
model.add(Conv2D(filters = 64, kernel_size =(3,3),padding = 'Same', activation ='relu'))
model.add(BatchNormalization())
 model.add(Conv2D(filters = 64, kernel_size =(3,3),padding = 'Same', activation ='relu'))
model.add(BatchNormalization())
 model.add(MaxPool2D(pool_size=(2,2), strides=(2,2)))
 model.add(Dropout(0.25))
model.add(Conv2D(filters = 64, kernel_size =(3,3), padding = 'Same', activation ='relu'))
model.add(BatchNormalization())
 model.add(Dropout(0.25))
model.add(Flatten())
 model.add(Dense(256, activation = "relu"))
model.add(BatchNormalization())
 model.add(Dropout(0.25))
model.add(Dense(10, activation = "softmax"))<choose_model_class>
LR_START = 0.00001
LR_MAX = 0.00005 * strategy.num_replicas_in_sync
LR_MIN = 0.00001
LR_RAMPUP_EPOCHS = 5
LR_SUSTAIN_EPOCHS = 0
LR_EXP_DECAY =.8
def lrfn(epoch):
if epoch < LR_RAMPUP_EPOCHS:
lr =(LR_MAX - LR_START)/ LR_RAMPUP_EPOCHS * epoch + LR_START
elif epoch < LR_RAMPUP_EPOCHS + LR_SUSTAIN_EPOCHS:
lr = LR_MAX
else:
lr =(LR_MAX - LR_MIN)* LR_EXP_DECAY**(epoch - LR_RAMPUP_EPOCHS - LR_SUSTAIN_EPOCHS)+ LR_MIN
return lr
lr_callback = tf.keras.callbacks.LearningRateScheduler(lrfn, verbose=True)
 rng = [i for i in range(EPOCHS)]
y = [lrfn(x)for x in rng]
plt.plot(rng, y)
 print("Learning rate schedule: {:.3g} to {:.3g} to {:.3g}".format(y[0], max(y), y[-1]))
optimizer = Adam(lr=0.001, beta_1=0.9, beta_2=0.999)
 model.compile(optimizer=optimizer, loss="categorical_crossentropy", metrics=["accuracy"])
 model.summary()<train_model>
GCS_PATH_SELECT = {
192: GCS_DS_PATH + '/tfrecords-jpeg-192x192',
224: GCS_DS_PATH + '/tfrecords-jpeg-224x224',
331: GCS_DS_PATH + '/tfrecords-jpeg-331x331',
512: GCS_DS_PATH + '/tfrecords-jpeg-512x512'
}
GCS_PATH = GCS_PATH_SELECT[IMAGE_SIZE[0]]
TRAINING_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/train/*.tfrec')
 VALIDATION_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/val/*.tfrec')
 TEST_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/test/*.tfrec')
 SKIP_VALIDATION = True
if SKIP_VALIDATION:
TRAINING_FILENAMES = TRAINING_FILENAMES + VALIDATION_FILENAMES
VALIDATION_MISMATCHES_IDS = []
batch_size = 128
epochs = 50
reduce_lr = LearningRateScheduler(lambda x: 1e-3 * 0.9 ** x)
 history = model.fit_generator(datagen.flow(xtrain, ytrain, batch_size = batch_size), epochs = epochs,
validation_data =(xtest, ytest), verbose=2,
steps_per_epoch=xtrain.shape[0] // batch_size,
callbacks = [reduce_lr] )<compute_test_metric>
CLASSES = ['pink primrose', 'hard-leaved pocket orchid', 'canterbury bells', 'sweet pea', 'wild geranium', 'tiger lily', 'moon orchid', 'bird of paradise', 'monkshood', 'globe thistle',
'snapdragon', "colt's foot", 'king protea', 'spear thistle', 'yellow iris', 'globe-flower', 'purple coneflower', 'peruvian lily', 'balloon flower', 'giant white arum lily',
'fire lily', 'pincushion flower', 'fritillary', 'red ginger', 'grape hyacinth', 'corn poppy', 'prince of wales feathers', 'stemless gentian', 'artichoke', 'sweet william',
'carnation', 'garden phlox', 'love in the mist', 'cosmos', 'alpine sea holly', 'ruby-lipped cattleya', 'cape flower', 'great masterwort', 'siam tulip', 'lenten rose',
'barberton daisy', 'daffodil', 'sword lily', 'poinsettia', 'bolero deep blue', 'wallflower', 'marigold', 'buttercup', 'daisy', 'common dandelion',
'petunia', 'wild pansy', 'primula', 'sunflower', 'lilac hibiscus', 'bishop of llandaff', 'gaura', 'geranium', 'orange dahlia', 'pink-yellow dahlia',
'cautleya spicata', 'japanese anemone', 'black-eyed susan', 'silverbush', 'californian poppy', 'osteospermum', 'spring crocus', 'iris', 'windflower', 'tree poppy',
'gazania', 'azalea', 'water lily', 'rose', 'thorn apple', 'morning glory', 'passion flower', 'lotus', 'toad lily', 'anthurium',
'frangipani', 'clematis', 'hibiscus', 'columbine', 'desert-rose', 'tree mallow', 'magnolia', 'cyclamen ', 'watercress', 'canna lily',
'hippeastrum ', 'bee balm', 'pink quill', 'foxglove', 'bougainvillea', 'camellia', 'mallow', 'mexican petunia', 'bromelia', 'blanket flower',
'trumpet creeper', 'blackberry lily', 'common tulip', 'wild rose']
model.evaluate(xtest, ytest )<compute_test_metric>
def get_mat(rotation, shear, height_zoom, width_zoom, height_shift, width_shift):
rotation = math.pi * rotation / 180.
 shear = math.pi * shear / 180.
 c1 = tf.math.cos(rotation)
 s1 = tf.math.sin(rotation)
 one = tf.constant([1],dtype='float32')
 zero = tf.constant([0],dtype='float32')
 rotation_matrix = tf.reshape(tf.concat([c1,s1,zero, -s1,c1,zero, zero,zero,one],axis=0),[3,3])
 c2 = tf.math.cos(shear)
 s2 = tf.math.sin(shear)
 shear_matrix = tf.reshape(tf.concat([one,s2,zero, zero,c2,zero, zero,zero,one],axis=0),[3,3])
 zoom_matrix = tf.reshape(tf.concat([one/height_zoom,zero,zero, zero,one/width_zoom,zero, zero,zero,one],axis=0),[3,3])
 shift_matrix = tf.reshape(tf.concat([one,zero,height_shift, zero,one,width_shift, zero,zero,one],axis=0),[3,3])
 return K.dot(K.dot(rotation_matrix, shear_matrix), K.dot(zoom_matrix, shift_matrix))
def transform(image,label):
DIM = IMAGE_SIZE[0]
XDIM = DIM%2
rot = 15.* tf.random.normal([1],dtype='float32')
 shr = 5.* tf.random.normal([1],dtype='float32')
 h_zoom = 1.0 + tf.random.normal([1],dtype='float32')/10.
 w_zoom = 1.0 + tf.random.normal([1],dtype='float32')/10.
 h_shift = 16.* tf.random.normal([1],dtype='float32')
 w_shift = 16.* tf.random.normal([1],dtype='float32')
 m = get_mat(rot,shr,h_zoom,w_zoom,h_shift,w_shift)
 x = tf.repeat(tf.range(DIM//2,-DIM//2,-1), DIM)
 y = tf.tile(tf.range(-DIM//2,DIM//2),[DIM])
 z = tf.ones([DIM*DIM],dtype='int32')
 idx = tf.stack([x,y,z])
 idx2 = K.dot(m,tf.cast(idx,dtype='float32'))
idx2 = K.cast(idx2,dtype='int32')
 idx2 = K.clip(idx2,-DIM//2+XDIM+1,DIM//2)
 idx3 = tf.stack([DIM//2-idx2[0,], DIM//2-1+idx2[1,]])
 d = tf.gather_nd(image,tf.transpose(idx3))
return tf.reshape(d,[DIM,DIM,3]),label
model.evaluate(xtrain, ytrain )<save_to_csv>
def decode_image(image_data):
image = tf.image.decode_jpeg(image_data, channels=3)
 image = tf.cast(image, tf.float32)/ 255.0
image = tf.reshape(image, [*IMAGE_SIZE, 3])
 return image
def read_labeled_tfrecord(example):
LABELED_TFREC_FORMAT = {
"image": tf.io.FixedLenFeature([], tf.string),
"class": tf.io.FixedLenFeature([], tf.int64),
}
example = tf.io.parse_single_example(example, LABELED_TFREC_FORMAT)
 image = decode_image(example['image'])
 label = tf.cast(example['class'], tf.int32)
 return image, label
def read_unlabeled_tfrecord(example):
UNLABELED_TFREC_FORMAT = {
"image": tf.io.FixedLenFeature([], tf.string),
"id": tf.io.FixedLenFeature([], tf.string),
}
example = tf.io.parse_single_example(example, UNLABELED_TFREC_FORMAT)
 image = decode_image(example['image'])
 idnum = example['id']
return image, idnum
def read_labeled_id_tfrecord(example):
LABELED_ID_TFREC_FORMAT = {
"image": tf.io.FixedLenFeature([], tf.string),
"class": tf.io.FixedLenFeature([], tf.int64),
"id": tf.io.FixedLenFeature([], tf.string),
}
example = tf.io.parse_single_example(example, LABELED_ID_TFREC_FORMAT)
 image = decode_image(example['image'])
 label = tf.cast(example['class'], tf.int32)
 idnum = example['id']
return image, label, idnum
def load_dataset(filenames, labeled=True, ordered=False):
ignore_order = tf.data.Options()
if not ordered:
ignore_order.experimental_deterministic = False
dataset = tf.data.TFRecordDataset(filenames, num_parallel_reads=AUTO)
 dataset = dataset.with_options(ignore_order)
 dataset = dataset.map(read_labeled_id_tfrecord if labeled else read_unlabeled_tfrecord, num_parallel_calls=AUTO)
 return dataset
def load_dataset_with_id(filenames, ordered=False):
ignore_order = tf.data.Options()
if not ordered:
ignore_order.experimental_deterministic = False
dataset = tf.data.TFRecordDataset(filenames, num_parallel_reads=AUTO)
 dataset = dataset.with_options(ignore_order)
 dataset = dataset.map(read_labeled_id_tfrecord, num_parallel_calls=AUTO)
 return dataset
def data_augment(image, label):
image = tf.image.random_flip_left_right(image)
 return image, label
def get_training_dataset() :
dataset = load_dataset(TRAINING_FILENAMES, labeled=True)
 dataset = dataset.filter(lambda image, label, idnum: tf.reduce_sum(tf.cast(idnum == VALIDATION_MISMATCHES_IDS, tf.int32)) ==0)
 dataset = dataset.map(lambda image, label, idnum: [image, label])
 dataset = dataset.map(transform, num_parallel_calls=AUTO)
 dataset = dataset.map(data_augment, num_parallel_calls=AUTO)
 dataset = dataset.repeat()
dataset = dataset.shuffle(2048)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.prefetch(AUTO)
 return dataset
def get_validation_dataset(ordered=False):
dataset = load_dataset(VALIDATION_FILENAMES, labeled=True, ordered=ordered)
 dataset = dataset.filter(lambda image, label, idnum: tf.reduce_sum(tf.cast(idnum == VALIDATION_MISMATCHES_IDS, tf.int32)) ==0)
 dataset = dataset.map(lambda image, label, idnum: [image, label])
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.cache()
dataset = dataset.prefetch(AUTO)
 return dataset
def get_validation_dataset_with_id(ordered=False):
dataset = load_dataset_with_id(VALIDATION_FILENAMES, ordered=ordered)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.cache()
dataset = dataset.prefetch(AUTO)
 return dataset
def get_test_dataset(ordered=False):
dataset = load_dataset(TEST_FILENAMES, labeled=False, ordered=ordered)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.prefetch(AUTO)
 return dataset
def count_data_items(filenames):
dataset = load_dataset(filenames,labeled = False)
 dataset = dataset.map(lambda image, idnum: idnum)
 dataset = dataset.filter(lambda idnum: tf.reduce_sum(tf.cast(idnum == VALIDATION_MISMATCHES_IDS, tf.int32)) ==0)
 uids = next(iter(dataset.batch(21000)) ).numpy().astype('U')
 return len(np.unique(uids))
NUM_TRAINING_IMAGES = count_data_items(TRAINING_FILENAMES)
 NUM_VALIDATION_IMAGES =(1 - SKIP_VALIDATION)* count_data_items(VALIDATION_FILENAMES)
 NUM_TEST_IMAGES = count_data_items(TEST_FILENAMES)
 STEPS_PER_EPOCH = NUM_TRAINING_IMAGES // BATCH_SIZE
print('Dataset: {} training images, {} validation images, {} unlabeled test images'.format(NUM_TRAINING_IMAGES, NUM_VALIDATION_IMAGES, NUM_TEST_IMAGES))
testprediction=np.argmax(model.predict(test),axis=1)
 testimage=[]
for i in range(len(testprediction)) :
testimage.append(i+1)
 final={'ImageId':testimage,'Label':testprediction}
submission=pd.DataFrame(final)
 submission.to_csv('submssion.csv',index=False )<load_from_csv>
with strategy.scope() :
enet = efn.EfficientNetB7(
 input_shape=(512, 512, 3),
weights='noisy-student',
include_top=False 
)
 model = tf.keras.Sequential([
enet,
tf.keras.layers.GlobalAveragePooling2D() ,
tf.keras.layers.Dense(len(CLASSES), activation='softmax')
 ])
 model.compile(
 optimizer=tf.keras.optimizers.Adam(lr=0.0001),
loss = 'sparse_categorical_crossentropy',
metrics=['sparse_categorical_accuracy'] 
)
 model.summary()
pd.set_option('display.max_columns', 500)
 pd.set_option('display.max_rows', 500)
 df_train = pd.read_csv('.. /input/titanic/train.csv', delimiter = ",")
 df_test = pd.read_csv('.. /input/titanic/test.csv', delimiter = ",")
 df_sub = pd.read_csv('.. /input/titanic/gender_submission.csv', delimiter = "," )<concatenate>
history = model.fit(
 get_training_dataset() ,
steps_per_epoch=STEPS_PER_EPOCH,
epochs=EPOCHS,
callbacks=[lr_callback],
validation_data=None if SKIP_VALIDATION else get_validation_dataset()
)
df = pd.concat([df_train, df_test],sort=False)
 df.reset_index(drop=True,inplace=True )<feature_engineering>
with strategy.scope() :
rnet = DenseNet201(
 input_shape=(512, 512, 3),
weights='imagenet',
include_top=False 
)
 model2 = tf.keras.Sequential([
rnet,
tf.keras.layers.GlobalAveragePooling2D() ,
tf.keras.layers.Dense(len(CLASSES), activation='softmax')
 ])
 model2.compile(
 optimizer=tf.keras.optimizers.Adam(lr=0.0001),
loss = 'sparse_categorical_crossentropy',
metrics=['sparse_categorical_accuracy'] 
)
 model2.summary()
age60=df[(df['Age']>60)&(df['Age']<70)]
age60.groupby(['Pclass','Embarked','SibSp','Parch'] ).median()
df.loc[df['PassengerId'] == 1044, 'Fare'] = 7.9<feature_engineering>
history2 = model2.fit(
 get_training_dataset() ,
steps_per_epoch=STEPS_PER_EPOCH,
epochs=EPOCHS,
callbacks=[lr_callback],
validation_data=None if SKIP_VALIDATION else get_validation_dataset()
)
df['Fare']=np.round(df['Fare'])
 p01 = df['Fare'].quantile(0.01)
 p99 = df['Fare'].quantile(0.99)
 df['Fare'] = df['Fare'].clip(p01, p99 )<feature_engineering>
test_ds = get_test_dataset(ordered=True)
 print('Computing predictions...')
 test_images_ds = test_ds.map(lambda image, idnum: image)
 probabilities = best_alpha*model.predict(test_images_ds)+(1-best_alpha)*model2.predict(test_images_ds)
 predictions = np.argmax(probabilities, axis=-1)
 print(predictions)
 print('Generating submission.csv file...')
 test_ids_ds = test_ds.map(lambda image, idnum: idnum ).unbatch()
test_ids = next(iter(test_ids_ds.batch(NUM_TEST_IMAGES)) ).numpy().astype('U')
 np.savetxt('submission.csv', np.rec.fromarrays([test_ids, predictions]), fmt=['%s', '%d'], delimiter=',', header='id,label', comments='' )