Kaggle competition: Petals to the Metal - Flower Classification on TPU
def count_na(series):
return series.isna().sum()
agg_funcs =('nunique', count_na)
 dv = 'Survived'
summary_df = all_data.aggregate(agg_funcs, dropna=False ).transpose()
for dv_val in all_data[dv].unique() :
dv_val_data =(
 all_data 
.loc[lambda df: df[dv] == dv_val] 
.aggregate(agg_funcs, dropna=False ).transpose() 
)
 summary_df[pd.MultiIndex.from_product([[f'{dv}_{dv_val}'], dv_val_data.columns])] = dv_val_data
summary_df['dtypes'] = all_data.dtypes
summary_df['cardinality'] = np.where(summary_df['nunique'] > 20, 'many', 'few')
 summary_df = summary_df.sort_values(['dtypes', 'nunique'] ).drop(dv)
 summary_df<count_duplicates>
!pip install efficientnet
print("Tensorflow version " + tf.__version__)
for _, row in summary_df[['dtypes', 'cardinality']].drop_duplicates().iterrows() :
print(
 f"{row['dtypes']} {row['cardinality']}:",
summary_df.loc[
lambda df:(df['dtypes'] == row['dtypes'])&(df['cardinality'] == row['cardinality'])
 ].index.tolist() ,
)<load_from_csv>
AUTO = tf.data.experimental.AUTOTUNE
AUTO
train_df = pd.read_csv('/kaggle/input/titanic/train.csv' )<load_from_csv>
tpu = tf.distribute.cluster_resolver.TPUClusterResolver()
tf.config.experimental_connect_to_cluster(tpu)
 tf.tpu.experimental.initialize_tpu_system(tpu)
 strategy = tf.distribute.experimental.TPUStrategy(tpu)
test_df = pd.read_csv('/kaggle/input/titanic/test.csv')
 test_df.head()<filter>
IMAGE_SIZE = [512, 512]
EPOCHS = 30
BATCH_SIZE = 32 * strategy.num_replicas_in_sync
LEARNING_RATE = 1e-3
TTA_NUM = 5
women = train_df[train_df['Sex'] == 'female']['Survived']
sum(women)/len(women)* 100<filter>
GCS_DS_PATH = KaggleDatasets().get_gcs_path('tpu-getting-started' )
men = train_df[train_df['Sex'] == 'male']['Survived']
sum(men)/len(men)* 100<count_values>
GCS_PATH_SELECT = {
192: GCS_DS_PATH + '/tfrecords-jpeg-192x192',
224: GCS_DS_PATH + '/tfrecords-jpeg-224x224',
331: GCS_DS_PATH + '/tfrecords-jpeg-331x331',
512: GCS_DS_PATH + '/tfrecords-jpeg-512x512'
}
GCS_PATH = GCS_PATH_SELECT[IMAGE_SIZE[0]]
TRAINING_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/train/*.tfrec')
 VALIDATION_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/val/*.tfrec')
 TEST_FILENAMES = tf.io.gfile.glob(GCS_PATH + '/test/*.tfrec' )
train_df['SibSp'].value_counts()<save_to_csv>
SKIP_VALIDATION = True
if SKIP_VALIDATION:
TRAINING_FILENAMES = TRAINING_FILENAMES + VALIDATION_FILENAMES
y = train_df['Survived']
features = ["Sex", "Pclass", "SibSp", "Parch"]
X = pd.get_dummies(train_df[features])
 X_test = pd.get_dummies(test_df[features])
 model = RandomForestClassifier(n_estimators=100, max_depth=5, random_state=1)
 model.fit(X, y)
 predictions = model.predict(X_test)
 output = pd.DataFrame({'PassengerId': test_df.PassengerId, 'Survived': predictions})
 output.to_csv('my_submission.csv', index=False)
 print("Your submission was successfully saved!" )<count_values>
CLASSES = ['pink primrose', 'hard-leaved pocket orchid', 'canterbury bells', 'sweet pea', 'wild geranium', 'tiger lily', 'moon orchid', 'bird of paradise', 'monkshood', 'globe thistle',
'snapdragon', "colt's foot", 'king protea', 'spear thistle', 'yellow iris', 'globe-flower', 'purple coneflower', 'peruvian lily', 'balloon flower', 'giant white arum lily',
'fire lily', 'pincushion flower', 'fritillary', 'red ginger', 'grape hyacinth', 'corn poppy', 'prince of wales feathers', 'stemless gentian', 'artichoke', 'sweet william',
'carnation', 'garden phlox', 'love in the mist', 'cosmos', 'alpine sea holly', 'ruby-lipped cattleya', 'cape flower', 'great masterwort', 'siam tulip', 'lenten rose',
'barberton daisy', 'daffodil', 'sword lily', 'poinsettia', 'bolero deep blue', 'wallflower', 'marigold', 'buttercup', 'daisy', 'common dandelion',
'petunia', 'wild pansy', 'primula', 'sunflower', 'lilac hibiscus', 'bishop of llandaff', 'gaura', 'geranium', 'orange dahlia', 'pink-yellow dahlia',
'cautleya spicata', 'japanese anemone', 'black-eyed susan', 'silverbush', 'californian poppy', 'osteospermum', 'spring crocus', 'iris', 'windflower', 'tree poppy',
'gazania', 'azalea', 'water lily', 'rose', 'thorn apple', 'morning glory', 'passion flower', 'lotus', 'toad lily', 'anthurium',
'frangipani', 'clematis', 'hibiscus', 'columbine', 'desert-rose', 'tree mallow', 'magnolia', 'cyclamen ', 'watercress', 'canna lily',
'hippeastrum ', 'bee balm', 'pink quill', 'foxglove', 'bougainvillea', 'camellia', 'mallow', 'mexican petunia', 'bromelia', 'blanket flower',
'trumpet creeper', 'blackberry lily', 'common tulip', 'wild rose']
print(f"No of Flower classes in dataset: {len(CLASSES)}" )
train_df['Survived'].value_counts()<sort_values>
LR_START = 0.00001
LR_MAX = 0.00005 * strategy.num_replicas_in_sync
LR_MIN = 0.00001
LR_RAMPUP_EPOCHS = 5
LR_SUSTAIN_EPOCHS = 0
LR_EXP_DECAY =.7
def lrfn(epoch):
if epoch < LR_RAMPUP_EPOCHS:
lr =(LR_MAX - LR_START)/ LR_RAMPUP_EPOCHS * epoch + LR_START
elif epoch < LR_RAMPUP_EPOCHS + LR_SUSTAIN_EPOCHS:
lr = LR_MAX
else:
lr =(LR_MAX - LR_MIN)* LR_EXP_DECAY**(epoch - LR_RAMPUP_EPOCHS - LR_SUSTAIN_EPOCHS)+ LR_MIN
return lr
lr_callback = tf.keras.callbacks.LearningRateScheduler(lrfn, verbose=True)
 rng = [i for i in range(EPOCHS)]
y = [lrfn(x)for x in rng]
plt.plot(rng, y)
 print("Learning rate schedule: {:.3g} to {:.3g} to {:.3g}".format(y[0], max(y), y[-1]))
train_df[['Pclass','Survived']].groupby(['Pclass'], as_index=False ).mean().sort_values(by='Survived', ascending='False' )<sort_values>
def decode_image(image_data):
image = tf.image.decode_jpeg(image_data, channels=3)
 image = tf.cast(image, tf.float32)/ 255.0
image = tf.reshape(image, [*IMAGE_SIZE, 3])
 return image
def read_labeled_tfrecord(example):
LABELED_TFREC_FORMAT = {
"image": tf.io.FixedLenFeature([], tf.string),
"class": tf.io.FixedLenFeature([], tf.int64),
}
example = tf.io.parse_single_example(example, LABELED_TFREC_FORMAT)
 image = decode_image(example['image'])
 label = tf.cast(example['class'], tf.int32)
 return image, label
def read_unlabeled_tfrecord(example):
UNLABELED_TFREC_FORMAT = {
"image": tf.io.FixedLenFeature([], tf.string),
"id": tf.io.FixedLenFeature([], tf.string),
}
example = tf.io.parse_single_example(example, UNLABELED_TFREC_FORMAT)
 image = decode_image(example['image'])
 idnum = example['id']
return image, idnum
def data_augment(image, label, seed=2020):
image = tf.image.random_flip_left_right(image, seed=seed)
 return image, label
def get_training_dataset() :
dataset = load_dataset(TRAINING_FILENAMES, labeled=True)
 dataset = dataset.map(data_augment, num_parallel_calls=AUTO)
 dataset = dataset.repeat()
dataset = dataset.shuffle(2048)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.prefetch(AUTO)
 return dataset
def get_validation_dataset(ordered=False):
dataset = load_dataset(VALIDATION_FILENAMES, labeled=True, ordered=ordered)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.cache()
dataset = dataset.prefetch(AUTO)
 return dataset
def get_train_valid_datasets() :
dataset = load_dataset(TRAINING_FILENAMES + VALIDATION_FILENAMES, labeled=True)
 dataset = dataset.map(data_augment, num_parallel_calls=AUTO)
 dataset = dataset.repeat()
dataset = dataset.shuffle(2048)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.prefetch(AUTO)
 return dataset
def get_test_dataset(ordered=False):
dataset = load_dataset(TEST_FILENAMES, labeled=False, ordered=ordered)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.prefetch(AUTO)
 return dataset
def count_data_items(filenames):
n = [int(re.compile(r"-([0-9]*)\." ).search(filename ).group(1)) for filename in filenames]
return np.sum(n )
train_df[['Sex','Survived']].groupby(['Sex'], as_index=False ).mean().sort_values(by='Survived', ascending='False' )<sort_values>
models = []
histories = []
train_df[['SibSp','Survived']].groupby(['SibSp'], as_index=False ).mean().sort_values(by='Survived', ascending='False' )<sort_values>
NUM_TRAINING_IMAGES = count_data_items(TRAINING_FILENAMES)
 NUM_VALIDATION_IMAGES = count_data_items(VALIDATION_FILENAMES)
 NUM_TEST_IMAGES = count_data_items(TEST_FILENAMES)
 STEPS_PER_EPOCH =(NUM_TRAINING_IMAGES + NUM_VALIDATION_IMAGES)// BATCH_SIZE
print('Dataset: {} training images, {} unlabeled test images'.format(NUM_TRAINING_IMAGES+NUM_VALIDATION_IMAGES, NUM_TEST_IMAGES))
train_df[['Parch','Survived']].groupby(['Parch'], as_index=False ).mean().sort_values(by='Survived', ascending='False' )<sort_values>
def load_dataset(filenames, labeled=True, ordered=False):
ignore_order = tf.data.Options()
if not ordered:
ignore_order.experimental_deterministic = False
dataset = tf.data.TFRecordDataset(filenames, num_parallel_reads=AUTO)
 dataset = dataset.with_options(ignore_order)
 dataset = dataset.map(read_labeled_tfrecord if labeled else read_unlabeled_tfrecord, num_parallel_calls=AUTO)
 return dataset
def get_training_dataset_preview(ordered=True):
dataset = load_dataset(TRAINING_FILENAMES, labeled=True, ordered=ordered)
 dataset = dataset.batch(BATCH_SIZE)
 dataset = dataset.cache()
dataset = dataset.prefetch(AUTO)
 return dataset
np.set_printoptions(threshold=15, linewidth=80)
 def batch_to_numpy_images_and_labels(data):
images, labels = data
numpy_images = images.numpy()
numpy_labels = labels.numpy()
if numpy_labels.dtype == object:
numpy_labels = [None for _ in enumerate(numpy_images)]
return numpy_images, numpy_labels
def title_from_label_and_target(label, correct_label):
if correct_label is None:
return CLASSES[label], True
correct =(label == correct_label)
 return "{} [{}{}{}]".format(CLASSES[label], 'OK' if correct else 'NO', u"\u2192" if not correct else '',
CLASSES[correct_label] if not correct else ''), correct
def dataset_to_numpy_util(dataset, N):
dataset = dataset.unbatch().batch(N)
 for images, labels in dataset:
numpy_images = images.numpy()
numpy_labels = labels.numpy()
break;
return numpy_images, numpy_labels
train_df[['Embarked','Survived']].groupby(['Embarked'], as_index=False ).mean().sort_values(by='Survived', ascending='False' )<feature_engineering>
train_dataset = get_training_dataset_preview(ordered=True)
 y_train = next(iter(train_dataset.unbatch().map(lambda image, label: label ).batch(NUM_TRAINING_IMAGES)) ).numpy()
print('Number of training images %d' % NUM_TRAINING_IMAGES)
for dataset in combine:
dataset['Title'] = dataset.Name.str.extract('([A-Za-z]+)\.', expand=False)
 pd.crosstab(train_df['Title'], train_df['Sex'] )<feature_engineering>
display_batch_of_images(next(iter(train_dataset.unbatch().batch(20))))
for dataset in combine:
dataset['Title'] = dataset['Title'].replace(['Lady', 'Countess','Capt', 'Col', 'Don', 'Dr', 'Major', 'Rev', 'Sir', 'Jonkheer', 'Dona'], 'Rare')
 dataset['Title'] = dataset['Title'].replace('Mlle', 'Miss')
 dataset['Title'] = dataset['Title'].replace('Ms', 'Miss')
 dataset['Title'] = dataset['Title'].replace('Mme', 'Mrs')
 train_df[['Title', 'Survived']].groupby(['Title'], as_index=False ).mean()<categorify>
test_dataset = get_test_dataset()
test_dataset = test_dataset.unbatch().batch(20)
 test_batch = iter(test_dataset)
title_mapping = {"Mr": 1, "Miss": 2, "Mrs": 3, "Master": 4, "Rare": 5}
for dataset in combine:
dataset['Title'] = dataset['Title'].map(title_mapping)
 dataset['Title'] = dataset['Title'].fillna(0)
 train_df.head()<drop_column>
def create_model() :
pretrained_model = tf.keras.applications.Xception(input_shape=(IMAGE_SIZE[0],IMAGE_SIZE[1],3),weights='imagenet',include_top=False)
 pretrained_model.trainable = True
model = tf.keras.Sequential([
pretrained_model,
tf.keras.layers.GlobalAveragePooling2D(name="Layer1"),
tf.keras.layers.Dropout(0.4),
tf.keras.layers.Dense(len(CLASSES), activation='softmax')
 ])
 model.compile(
 optimizer=tf.keras.optimizers.Adam(lr=0.0001),
loss = 'sparse_categorical_crossentropy',
metrics=['categorical_accuracy'] 
)
 return model
train_df = train_df.drop(['Name', 'PassengerId'], axis=1)
 test_df = test_df.drop(['Name'], axis=1)
 combine = [train_df, test_df]
train_df.shape, test_df.shape<data_type_conversions>
with strategy.scope() :
Xception_model = create_model()
Xception_model.summary()
for dataset in combine:
dataset['Sex'] = dataset['Sex'].map({'female': 1, 'male': 0} ).astype(int)
 train_df.head()<define_variables>
%%time
Checkpoint=tf.keras.callbacks.ModelCheckpoint(f"xception_model.h5", monitor='val_accuracy', verbose=1, save_best_only=True,
save_weights_only=True,mode='max')
 Xception_history1 = Xception_model.fit(
 get_training_dataset() ,
steps_per_epoch=STEPS_PER_EPOCH,
epochs=EPOCHS,
callbacks=[lr_callback, Checkpoint])
 histories.append(Xception_history1 )
guess_ages = np.zeros(( 2,3))
guess_ages<find_best_params>
with strategy.scope() :
enet = efn.EfficientNetB7(
 input_shape=(IMAGE_SIZE[0], IMAGE_SIZE[1], 3),
weights='imagenet',
include_top=False 
)
 enet.trainable = True
model1 = tf.keras.Sequential([
enet,
tf.keras.layers.GlobalMaxPooling2D(name="Layer1"),
tf.keras.layers.Dropout(0.4),
tf.keras.layers.Dense(len(CLASSES), activation='softmax')
 ])
 model1.compile(
 optimizer=tf.keras.optimizers.Adam(lr=0.0001),
loss = 'sparse_categorical_crossentropy',
metrics=['categorical_accuracy'] 
)
 model1.summary()
models.append(model1 )
for dataset in combine:
for i in range(0, 2):
for j in range(0, 3):
guess_df = dataset[(dataset['Sex'] == i)& \ 
(dataset['Pclass'] == j+1)]['Age'].dropna()
age_guess = guess_df.median()
guess_ages[i,j] = int(age_guess/0.5 + 0.5)* 0.5
for i in range(0, 2):
for j in range(0, 3):
dataset.loc[(dataset.Age.isnull())&(dataset.Sex == i)&(dataset.Pclass == j+1),\
'Age'] = guess_ages[i,j]
dataset['Age'] = dataset['Age'].astype(int)
 train_df.head()<sort_values>
%%time
Checkpoint=tf.keras.callbacks.ModelCheckpoint(f"Enet_model.h5", monitor='val_accuracy', verbose=1, save_best_only=True,
save_weights_only=True,mode='max')
 train_history1 = model1.fit(
 get_training_dataset() ,
steps_per_epoch=STEPS_PER_EPOCH,
epochs=EPOCHS,
callbacks=[lr_callback, Checkpoint], 
)
 histories.append(train_history1)
train_df['AgeBand'] = pd.cut(train_df['Age'], 5)
 train_df[['AgeBand', 'Survived']].groupby(['AgeBand'], as_index=False ).mean().sort_values(by='AgeBand', ascending=True )<feature_engineering>
if not SKIP_VALIDATION:
cmdataset = get_validation_dataset(ordered=True)
 images_ds = cmdataset.map(lambda image, label: image)
 labels_ds = cmdataset.map(lambda image, label: label ).unbatch()
cm_correct_labels = next(iter(labels_ds.batch(NUM_VALIDATION_IMAGES)) ).numpy()
m1 = model1.predict(images_ds)
 m2 = Xception_model.predict(images_ds)
 scores = []
for alpha in np.linspace(0,1,100):
cm_probabilities = alpha*m1+(1-alpha)*m2
cm_predictions = np.argmax(cm_probabilities, axis=-1)
 scores.append(f1_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)) , average='macro'))
best_alpha = np.argmax(scores)/100
else:
best_alpha = 0.51
print('Best alpha: ' + str(best_alpha))
for dataset in combine:
dataset.loc[ dataset['Age'] <= 16, 'Age'] = 0
dataset.loc[(dataset['Age'] > 16)&(dataset['Age'] <= 32), 'Age'] = 1
dataset.loc[(dataset['Age'] > 32)&(dataset['Age'] <= 48), 'Age'] = 2
dataset.loc[(dataset['Age'] > 48)&(dataset['Age'] <= 64), 'Age'] = 3
dataset.loc[ dataset['Age'] > 64, 'Age']
train_df.head()<drop_column>
if not SKIP_VALIDATION:
cmat = confusion_matrix(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)))
 score = f1_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)) , average='macro')
 precision = precision_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)) , average='macro')
 recall = recall_score(cm_correct_labels, cm_predictions, labels=range(len(CLASSES)) , average='macro')
 display_confusion_matrix(cmat, score, precision, recall)
 print('f1 score: {:.3f}, precision: {:.3f}, recall: {:.3f}'.format(score, precision, recall))
train_df = train_df.drop(['AgeBand'], axis=1)
 combine = [train_df, test_df]
train_df.head()<sort_values>
def predict_tta(model, n_iter):
probs = []
for i in range(n_iter):
test_ds = get_test_dataset(ordered=True)
 test_images_ds = test_ds.map(lambda image, idnum: image)
 probs.append(model.predict(test_images_ds,verbose=0))
return probs
<feature_engineering><EOS> 
test_ds = get_test_dataset(ordered=True)
 print('Calculating predictions...')
 test_images_ds = test_ds.map(lambda image, idnum: image)
 probs1 = np.mean(predict_tta(model1, TTA_NUM), axis=0)
 probs2 = np.mean(predict_tta(Xception_model, TTA_NUM), axis=0)
 probabilities = best_alpha*probs1 +(1-best_alpha)*probs2
predictions = np.argmax(probabilities, axis=-1)
 print('Generating submission file...')
 test_ids_ds = test_ds.map(lambda image, idnum: idnum ).unbatch()
test_ids = next(iter(test_ids_ds.batch(NUM_TEST_IMAGES)) ).numpy().astype('U')
 np.savetxt('submission.csv', np.rec.fromarrays([test_ids, predictions]), fmt=['%s', '%d'], delimiter=',', header='id,label', comments='')