Kaggle competition: Kannada MNIST
COLS = ['Sex','SmokingStatus']
FE = []
for col in COLS:
for mod in data[col].unique() :
FE.append(mod)
 data[mod] =(data[col] == mod ).astype(int)
<feature_engineering>
import tensorflow as tf
import seaborn as sns
import matplotlib.pyplot as plt
import matplotlib.image as mpimg
from sklearn.model_selection import train_test_split
from sklearn.metrics import confusion_matrix
import itertools
from keras.utils.np_utils import to_categorical
from keras.models import Sequential
from keras.layers import Dense, Dropout, Flatten, Conv2D, MaxPool2D
from keras.optimizers import RMSprop
from keras.preprocessing.image import ImageDataGenerator
from keras.callbacks import ReduceLROnPlateau
data['age'] =(data['Age'] - data['Age'].min())/(data['Age'].max() - data['Age'].min())
 data['BASE'] =(data['min_FVC'] - data['min_FVC'].min())/(data['min_FVC'].max() - data['min_FVC'].min())
 data['week'] =(data['base_week'] - data['base_week'].min())/(data['base_week'].max() - data['base_week'].min())
 data['percent'] =(data['Percent'] - data['Percent'].min())/(data['Percent'].max() - data['Percent'].min())
 FE += ['age','percent','week','BASE']<filter>
%matplotlib inline
sns.set()
tr = data.loc[data.WHERE=='train']
chunk = data.loc[data.WHERE=='val']
sub = data.loc[data.WHERE=='test']
del data<compute_test_metric>
train = pd.read_csv("/kaggle/input/Kannada-MNIST/train.csv")
 test = pd.read_csv("/kaggle/input/Kannada-MNIST/test.csv")
 test.columns
C1, C2 = tf.constant(70, dtype='float32'), tf.constant(1000, dtype="float32")
 def score(y_true, y_pred):
tf.dtypes.cast(y_true, tf.float32)
 tf.dtypes.cast(y_pred, tf.float32)
 sigma = y_pred[:, 2] - y_pred[:, 0]
fvc_pred = y_pred[:, 1]
sigma_clip = tf.maximum(sigma, C1)
 delta = tf.abs(y_true[:, 0] - fvc_pred)
 delta = tf.minimum(delta, C2)
 sq2 = tf.sqrt(tf.dtypes.cast(2, dtype=tf.float32))
metric =(delta / sigma_clip)*sq2 + tf.math.log(sigma_clip* sq2)
 return K.mean(metric)
 def qloss(y_true, y_pred):
qs = [0.2, 0.50, 0.8]
q = tf.constant(np.array([qs]), dtype=tf.float32)
 e = y_true - y_pred
v = tf.maximum(q*e,(q-1)*e)
 return K.mean(v)
 def mloss(_lambda):
def loss(y_true, y_pred):
return _lambda * qloss(y_true, y_pred)+(1 - _lambda)*score(y_true, y_pred)
 return loss
def make_model(nh):
z = L.Input(( nh,), name="Patient")
 x = L.Dense(100, activation="relu", name="d1" )(z)
 x = L.Dense(100, activation="relu", name="d2" )(x)
 p1 = L.Dense(3, activation="linear", name="p1" )(x)
 p2 = L.Dense(3, activation="relu", name="p2" )(x)
 preds = L.Lambda(lambda x: x[0] + tf.cumsum(x[1], axis=1),
name="preds" )([p1, p2])
 model = M.Model(z, preds, name="CNN")
 model.compile(loss=mloss(0.8), optimizer=tf.keras.optimizers.Adam(lr=0.1, beta_1=0.9, beta_2=0.999, epsilon=None, decay=0.01, amsgrad=False), metrics=[score])
 return model<prepare_x_and_y>
Y = train["label"]
X = train.drop(labels = ["label"],axis = 1)
 testX = test.drop(labels = ["id"],axis = 1)
 g = sns.countplot(Y)
 Y.value_counts().sort_values()
y = tr['FVC'].values
z = tr[FE].values
ze = sub[FE].values
nh = z.shape[1]
pe = np.zeros(( ze.shape[0], 3))
pred = np.zeros(( z.shape[0], 3))<choose_model_class>
del train
NFOLD = 5
kf = KFold(n_splits=NFOLD )<predict_on_test>
X = X / 255.0
testX = testX / 255.0
%%time
cnt = 0
EPOCHS = 800
for tr_idx, val_idx in kf.split(z):
cnt += 1
print(f"FOLD {cnt}")
 net = make_model(nh)
 net.fit(z[tr_idx], y[tr_idx], batch_size=BATCH_SIZE, epochs=EPOCHS,
validation_data=(z[val_idx], y[val_idx]), verbose=0)
 print("train", net.evaluate(z[tr_idx], y[tr_idx], verbose=0, batch_size=BATCH_SIZE))
print("val", net.evaluate(z[val_idx], y[val_idx], verbose=0, batch_size=BATCH_SIZE))
print("predict val...")
 pred[val_idx] = net.predict(z[val_idx], batch_size=BATCH_SIZE, verbose=0)
 print("predict test...")
 pe += net.predict(ze, batch_size=BATCH_SIZE, verbose=0)/ NFOLD 
<compute_test_metric>
Y = to_categorical(Y, num_classes = 10 )
sigma_opt = mean_absolute_error(y, pred[:, 1])
 unc = pred[:,2] - pred[:, 0]
sigma_mean = np.mean(unc)
 print(sigma_opt, sigma_mean )<feature_engineering>
Y
sub['FVC1'] = 0.996*pe[:, 1]
sub['Confidence1'] = pe[:, 2] - pe[:, 0]<prepare_output>
X_train, X_val, Y_train, Y_val = train_test_split(X, Y, test_size = 0.2, shuffle=True )
subm = sub[['Patient_Week','FVC','Confidence','FVC1','Confidence1']].copy()<feature_engineering>
model = Sequential()
model.add(Conv2D(filters = 32, kernel_size =(5,5),padding = 'Same', activation ='relu',
input_shape =(28,28,1)))
 model.add(Conv2D(filters = 32, kernel_size =(5,5),padding = 'Same', activation ='relu'))
model.add(MaxPool2D(pool_size=(2,2)))
 model.add(Dropout(0.25))
model.add(Conv2D(filters = 64, kernel_size =(3,3),padding = 'Same', activation ='relu'))
model.add(Conv2D(filters = 64, kernel_size =(3,3),padding = 'Same', activation ='relu'))
model.add(MaxPool2D(pool_size=(2,2), strides=(2,2)))
 model.add(Dropout(0.25))
model.add(Flatten())
 model.add(Dense(256, activation = "relu"))
model.add(Dropout(0.5))
model.add(Dense(10, activation = "softmax"))
subm.loc[~subm.FVC1.isnull() ,'FVC'] = subm.loc[~subm.FVC1.isnull() ,'FVC1']
if sigma_mean<70:
subm['Confidence'] = sigma_opt
else:
subm.loc[~subm.FVC1.isnull() ,'Confidence'] = subm.loc[~subm.FVC1.isnull() ,'Confidence1']<load_from_csv>
optimizer = RMSprop(lr=0.001, rho=0.9, epsilon=1e-08, decay=0.0)
 model.compile(optimizer = optimizer , loss = "categorical_crossentropy", metrics=["accuracy"])
 learning_rate_reduction = ReduceLROnPlateau(monitor='val_accuracy',
patience=3,
factor=0.3,
verbose=1,
min_lr=0.00001 )
otest = pd.read_csv('.. /input/osic-pulmonary-fibrosis-progression/test.csv')
 for i in range(len(otest)) :
subm.loc[subm['Patient_Week']==otest.Patient[i]+'_'+str(otest.Weeks[i]), 'FVC'] = otest.FVC[i]
subm.loc[subm['Patient_Week']==otest.Patient[i]+'_'+str(otest.Weeks[i]), 'Confidence'] = 0.1<save_to_csv>
datagen = ImageDataGenerator(
 featurewise_center=False,
samplewise_center=False,
featurewise_std_normalization=False,
samplewise_std_normalization=False,
zca_whitening=False,
rotation_range=10,
zoom_range = 0.1,
width_shift_range=0.1,
height_shift_range=0.1,
horizontal_flip=False,
vertical_flip=False)
 datagen.fit(X_train )
subm[["Patient_Week","FVC","Confidence"]].to_csv("submission.csv", index=False )<import_modules>
epochs = 30
batch_size = 96
history = model.fit_generator(datagen.flow(X_train,Y_train, batch_size=batch_size),
epochs = epochs, validation_data =(X_val,Y_val),
verbose = 2, steps_per_epoch=X_train.shape[0] // batch_size
, callbacks=[learning_rate_reduction] )
import numpy as np
import pandas as pd
from scipy import stats
import matplotlib.pyplot as plt
import seaborn as sns<set_options>
results = model.predict(testX)
 results = np.argmax(results,axis = 1)
 results = pd.Series(results,name="label" )
<load_from_csv><EOS> 
submission = pd.concat([test['id'],results],axis = 1)
 submission.to_csv("submission.csv",index=False)
 print('csv file ready for submission' )