Kaggle competition: Quora Insincere Questions Classification
<SOS> metric: FScore_1 Kaggle data source: quora-insincere-questions-classification<find_best_params>
import re
import time
import gc
import random
import os
import numpy as np
import pandas as pd
from tqdm import tqdm
from sklearn.model_selection import train_test_split
from sklearn import metrics
from sklearn.model_selection import GridSearchCV, StratifiedKFold
from sklearn.metrics import f1_score, roc_auc_score
from tensorflow.keras.preprocessing.text import Tokenizer
from tensorflow.keras.preprocessing.sequence import pad_sequences
import torch
import torch.nn as nn
import torch.utils.data
data.classes, data.c, len(data.train_ds), len(data.valid_ds )<choose_model_class>
def seed_torch(seed=1029):
random.seed(seed)
 os.environ['PYTHONHASHSEED'] = str(seed)
 np.random.seed(seed)
 torch.manual_seed(seed)
 torch.cuda.manual_seed(seed)
 torch.backends.cudnn.deterministic = True
learn = cnn_learner(data, models.resnet18, metrics=error_rate )<train_model>
embed_size = 300
max_features = 120000
maxlen = 72
batch_size = 1536
train_epochs = 8
SEED = 1029
learn.fit_one_cycle(4 )<save_model>
puncts = [',', '.', '"', ':', ')', '(', '-', '!', '?', '|', ';', "'", '$', '&', '/', '[', ']', '>', '%', '=', '
'·', '_', '{', '}', '©', '^', '®', '`', '<', '→', '°', '€', '™', '›', '♥', '←', '×', '§', '″', '′', 'Â', '█', '½', 'à', '…',
'“', '★', '”', '–', '●', 'â', '►', '−', '¢', '²', '¬', '░', '¶', '↑', '±', '¿', '▾', '═', '¦', '║', '―', '¥', '▓', '—', '‹', '─',
'▒', '：', '¼', '⊕', '▼', '▪', '†', '■', '’', '▀', '¨', '▄', '♫', '☆', 'é', '¯', '♦', '¤', '▲', 'è', '¸', '¾', 'Ã', '⋅', '‘', '∞',
'∙', '）', '↓', '、', '│', '（', '»', '，', '♪', '╩', '╚', '³', '・', '╦', '╣', '╔', '╗', '▬', '❤', 'ï', 'Ø', '¹', '≤', '‡', '√', ]
def clean_text(x):
x = str(x)
 for punct in puncts:
x = x.replace(punct, f' {punct} ')
 return x
def clean_numbers(x):
x = re.sub('[0-9]{5,}', '
x = re.sub('[0-9]{4}', '
x = re.sub('[0-9]{3}', '
x = re.sub('[0-9]{2}', '
return x
mispell_dict = {"aren't" : "are not",
"can't" : "cannot",
"couldn't" : "could not",
"didn't" : "did not",
"doesn't" : "does not",
"don't" : "do not",
"hadn't" : "had not",
"hasn't" : "has not",
"haven't" : "have not",
"he'd" : "he would",
"he'll" : "he will",
"he's" : "he is",
"i'd" : "I would",
"i'd" : "I had",
"i'll" : "I will",
"i'm" : "I am",
"isn't" : "is not",
"it's" : "it is",
"it'll":"it will",
"i've" : "I have",
"let's" : "let us",
"mightn't" : "might not",
"mustn't" : "must not",
"shan't" : "shall not",
"she'd" : "she would",
"she'll" : "she will",
"she's" : "she is",
"shouldn't" : "should not",
"that's" : "that is",
"there's" : "there is",
"they'd" : "they would",
"they'll" : "they will",
"they're" : "they are",
"they've" : "they have",
"we'd" : "we would",
"we're" : "we are",
"weren't" : "were not",
"we've" : "we have",
"what'll" : "what will",
"what're" : "what are",
"what's" : "what is",
"what've" : "what have",
"where's" : "where is",
"who'd" : "who would",
"who'll" : "who will",
"who're" : "who are",
"who's" : "who is",
"who've" : "who have",
"won't" : "will not",
"wouldn't" : "would not",
"you'd" : "you would",
"you'll" : "you will",
"you're" : "you are",
"you've" : "you have",
"'re": " are",
"wasn't": "was not",
"we'll":" will",
"didn't": "did not",
"tryin'":"trying"}
def _get_mispell(mispell_dict):
mispell_re = re.compile('(%s)' % '|'.join(mispell_dict.keys()))
return mispell_dict, mispell_re
mispellings, mispellings_re = _get_mispell(mispell_dict)
 def replace_typical_misspell(text):
def replace(match):
return mispellings[match.group(0)]
return mispellings_re.sub(replace, text )
learn.save('stage-1' )<find_best_params>
def load_and_prec() :
train_df = pd.read_csv(".. /input/train.csv")
 test_df = pd.read_csv(".. /input/test.csv")
 print("Train shape : ",train_df.shape)
 print("Test shape : ",test_df.shape)
 train_df["question_text"] = train_df["question_text"].progress_apply(lambda x: x.lower())
 test_df["question_text"] = test_df["question_text"].progress_apply(lambda x: x.lower())
 train_df["question_text"] = train_df["question_text"].progress_apply(lambda x: clean_text(x))
test_df["question_text"] = test_df["question_text"].progress_apply(lambda x: clean_text(x))
train_df["question_text"] = train_df["question_text"].progress_apply(lambda x: clean_numbers(x))
test_df["question_text"] = test_df["question_text"].progress_apply(lambda x: clean_numbers(x))
train_df["question_text"] = train_df["question_text"].progress_apply(lambda x: replace_typical_misspell(x))
test_df["question_text"] = test_df["question_text"].progress_apply(lambda x: replace_typical_misspell(x))
train_X = train_df["question_text"].fillna("_
test_X = test_df["question_text"].fillna("_
tokenizer = Tokenizer(num_words=max_features)
 tokenizer.fit_on_texts(list(train_X))
train_X = tokenizer.texts_to_sequences(train_X)
 test_X = tokenizer.texts_to_sequences(test_X)
 train_X = pad_sequences(train_X, maxlen=maxlen)
 test_X = pad_sequences(test_X, maxlen=maxlen)
 train_y = train_df['target'].values
np.random.seed(SEED)
 trn_idx = np.random.permutation(len(train_X))
train_X = train_X[trn_idx]
train_y = train_y[trn_idx]
return train_X, test_X, train_y, tokenizer.word_index
learn.lr_find()<train_model>
def load_glove(word_index):
EMBEDDING_FILE = '.. /input/embeddings/glove.840B.300d/glove.840B.300d.txt'
def get_coefs(word,*arr): return word, np.asarray(arr, dtype='float32')
 embeddings_index = dict(get_coefs(*o.split(" ")) for o in open(EMBEDDING_FILE))
all_embs = np.stack(embeddings_index.values())
 emb_mean,emb_std = all_embs.mean() , all_embs.std()
embed_size = all_embs.shape[1]
nb_words = min(max_features, len(word_index))
embedding_matrix = np.random.normal(emb_mean, emb_std,(nb_words, embed_size))
for word, i in word_index.items() :
if i >= max_features: continue
embedding_vector = embeddings_index.get(word)
 if embedding_vector is not None: embedding_matrix[i] = embedding_vector
return embedding_matrix
def load_para(word_index):
EMBEDDING_FILE = '.. /input/embeddings/paragram_300_sl999/paragram_300_sl999.txt'
def get_coefs(word,*arr): return word, np.asarray(arr, dtype='float32')
 embeddings_index = dict(get_coefs(*o.split(" ")) for o in open(EMBEDDING_FILE, encoding="utf8", errors='ignore')if len(o)>100)
 all_embs = np.stack(embeddings_index.values())
 emb_mean,emb_std = all_embs.mean() , all_embs.std()
embed_size = all_embs.shape[1]
nb_words = min(max_features, len(word_index))
embedding_matrix = np.random.normal(emb_mean, emb_std,(nb_words, embed_size))
for word, i in word_index.items() :
if i >= max_features: continue
embedding_vector = embeddings_index.get(word)
 if embedding_vector is not None: embedding_matrix[i] = embedding_vector
return embedding_matrix
learn.fit_one_cycle(2, max_lr=slice(3e-5,3e-3))<save_model>
tqdm.pandas()
start_time = time.time()
train_X, test_X, train_y, word_index = load_and_prec()
embedding_matrix_1 = load_glove(word_index)
 total_time =(time.time() - start_time)/ 60
print("Took {:.2f} minutes".format(total_time))
embedding_matrix = embedding_matrix_1
print(np.shape(embedding_matrix))
gc.collect()
learn.save('stage-2' )<load_pretrained>
class Attention(nn.Module):
def __init__(self, feature_dim, step_dim, bias=True, **kwargs):
super(Attention, self ).__init__(**kwargs)
 self.supports_masking = True
self.bias = bias
self.feature_dim = feature_dim
self.step_dim = step_dim
self.features_dim = 0
weight = torch.zeros(feature_dim, 1)
 nn.init.xavier_uniform_(weight)
 self.weight = nn.Parameter(weight)
 if bias:
self.b = nn.Parameter(torch.zeros(step_dim))
def forward(self, x, mask=None):
feature_dim = self.feature_dim
step_dim = self.step_dim
eij = torch.mm(
 x.contiguous().view(-1, feature_dim),
self.weight
).view(-1, step_dim)
 if self.bias:
eij = eij + self.b
eij = torch.tanh(eij)
 a = torch.exp(eij)
 if mask is not None:
a = a * mask
a = a / torch.sum(a, 1, keepdim=True)+ 1e-10
weighted_input = x * torch.unsqueeze(a, -1)
 return torch.sum(weighted_input, 1 )
learn.load('stage-2');<choose_model_class>
class NeuralNet(nn.Module):
def __init__(self):
super(NeuralNet, self ).__init__()
hidden_size = 60
self.embedding = nn.Embedding(max_features, embed_size)
 self.embedding.weight = nn.Parameter(torch.tensor(embedding_matrix, dtype=torch.float32))
self.embedding.weight.requires_grad = False
self.embedding_dropout = nn.Dropout2d(0.1)
 self.gru = nn.GRU(embed_size, hidden_size, bidirectional=True, batch_first=True)
 self.gru_attention = Attention(hidden_size*2, maxlen)
 self.linear = nn.Linear(360, 16)
 self.relu = nn.ReLU()
self.dropout = nn.Dropout(0.1)
 self.out = nn.Linear(16, 1)
 def forward(self, x):
h_embedding = self.embedding(x)
 h_embedding = torch.squeeze(self.embedding_dropout(torch.unsqueeze(h_embedding, 0)))
 h_gru, _ = self.gru(h_embedding)
 h_gru_atten = self.gru_attention(h_gru)
 avg_pool = torch.mean(h_gru, 1)
 max_pool, _ = torch.max(h_gru, 1)
 conc = torch.cat(( h_gru_atten, avg_pool, max_pool), 1)
 conc = self.relu(self.linear(conc))
conc = self.dropout(conc)
 out = self.out(conc)
 return out
interp = ClassificationInterpretation.from_learner(learn )<find_best_params>
splits = list(StratifiedKFold(n_splits=5, shuffle=True, random_state=SEED ).split(train_X, train_y))
losses,idxs = interp.top_losses()<predict_on_test>
def sigmoid(x):
return 1 /(1 + np.exp(-x))
class_score, y = learn.get_preds(DatasetType.Test )<define_variables>
def threshold_search(y_true, y_proba):
best_threshold = 0
best_score = 0
for threshold in tqdm([i * 0.01 for i in range(100)]):
score = f1_score(y_true=y_true, y_pred=y_proba > threshold)
 if score > best_score:
best_threshold = threshold
best_score = score
search_result = {'threshold': best_threshold, 'f1': best_score}
return search_result
probabilities = class_score[0].tolist()
[f"{index}: {probabilities[index]}" for index in range(len(probabilities)) ]<prepare_output>
train_preds = np.zeros(( len(train_X)))
 test_preds = np.zeros(( len(test_X)))
 seed_torch(SEED)
 x_test_cuda = torch.tensor(test_X, dtype=torch.long ).cuda()
test = torch.utils.data.TensorDataset(x_test_cuda)
 test_loader = torch.utils.data.DataLoader(test, batch_size=batch_size, shuffle=False)
 for i,(train_idx, valid_idx)in enumerate(splits):
x_train_fold = torch.tensor(train_X[train_idx], dtype=torch.long ).cuda()
y_train_fold = torch.tensor(train_y[train_idx, np.newaxis], dtype=torch.float32 ).cuda()
x_val_fold = torch.tensor(train_X[valid_idx], dtype=torch.long ).cuda()
y_val_fold = torch.tensor(train_y[valid_idx, np.newaxis], dtype=torch.float32 ).cuda()
model = NeuralNet()
model.cuda()
loss_fn = torch.nn.BCEWithLogitsLoss(reduction="sum")
 optimizer = torch.optim.Adam(model.parameters())
 train = torch.utils.data.TensorDataset(x_train_fold, y_train_fold)
 valid = torch.utils.data.TensorDataset(x_val_fold, y_val_fold)
 train_loader = torch.utils.data.DataLoader(train, batch_size=batch_size, shuffle=True)
 valid_loader = torch.utils.data.DataLoader(valid, batch_size=batch_size, shuffle=False)
 print(f'Fold {i + 1}')
 for epoch in range(train_epochs):
start_time = time.time()
model.train()
avg_loss = 0.
 for x_batch, y_batch in tqdm(train_loader, disable=True):
y_pred = model(x_batch)
 loss = loss_fn(y_pred, y_batch)
 optimizer.zero_grad()
loss.backward()
optimizer.step()
avg_loss += loss.item() / len(train_loader)
 model.eval()
valid_preds_fold = np.zeros(( x_val_fold.size(0)))
 test_preds_fold = np.zeros(len(test_X))
avg_val_loss = 0.
 for i,(x_batch, y_batch)in enumerate(valid_loader):
y_pred = model(x_batch ).detach()
avg_val_loss += loss_fn(y_pred, y_batch ).item() / len(valid_loader)
 valid_preds_fold[i * batch_size:(i+1)* batch_size] = sigmoid(y_pred.cpu().numpy())[:, 0]
elapsed_time = time.time() - start_time
print('Epoch {}/{} \t loss={:.4f} \t val_loss={:.4f} \t time={:.2f}s'.format(
 epoch + 1, train_epochs, avg_loss, avg_val_loss, elapsed_time))
for i,(x_batch,)in enumerate(test_loader):
y_pred = model(x_batch ).detach()
test_preds_fold[i * batch_size:(i+1)* batch_size] = sigmoid(y_pred.cpu().numpy())[:, 0]
train_preds[valid_idx] = valid_preds_fold
test_preds += test_preds_fold / len(splits )
class_score = np.argmax(class_score, axis=1 )<define_variables>
search_result = threshold_search(train_y, train_preds)
 search_result
<define_variables><EOS> 
sub = pd.read_csv('.. /input/sample_submission.csv')
 sub.prediction = test_preds > search_result['threshold']
sub.to_csv("submission.csv", index=False )