Kaggle competition: Cassava Leaf Disease Classification
<SOS> metric: CategorizationAccuracy Kaggle data source: cassava-leaf-disease-classification<define_variables>
!pip install --quiet /kaggle/input/kerasapplications
!pip install --quiet /kaggle/input/efficientnet-git
for i, e in enumerate(train['production_countries'][:5]):
print(i, e )<count_values>
def seed_everything(seed=0):
random.seed(seed)
 np.random.seed(seed)
 tf.random.set_seed(seed)
 os.environ['PYTHONHASHSEED'] = str(seed)
 os.environ['TF_DETERMINISTIC_OPS'] = '1'
seed = 0
seed_everything(seed)
 warnings.filterwarnings('ignore' )
print('Number of production countries in films')
 train['production_countries'].apply(lambda x: len(x)if x != {} else 0 ).value_counts()<count_values>
try:
tpu = tf.distribute.cluster_resolver.TPUClusterResolver()
print(f'Running on TPU {tpu.master() }')
 except ValueError:
tpu = None
if tpu:
tf.config.experimental_connect_to_cluster(tpu)
 tf.tpu.experimental.initialize_tpu_system(tpu)
 strategy = tf.distribute.experimental.TPUStrategy(tpu)
 else:
strategy = tf.distribute.get_strategy()
AUTO = tf.data.experimental.AUTOTUNE
REPLICAS = strategy.num_replicas_in_sync
print(f'REPLICAS: {REPLICAS}' )
list_of_countries = list(train['production_countries'].apply(lambda x: [i['name'] for i in x] if x != {} else [] ).values)
 Counter([i for j in list_of_countries for i in j] ).most_common(25 )<feature_engineering>
BATCH_SIZE = 16 * REPLICAS
HEIGHT = 512
WIDTH = 512
CHANNELS = 3
N_CLASSES = 5
TTA_STEPS = 8
train['num_countries'] = train['production_countries'].apply(lambda x: len(x)if x != {} else 0)
 train['all_countries'] = train['production_countries'].apply(lambda x: ' '.join(sorted([i['name'] for i in x])) if x != {} else '')
 top_countries = [m[0] for m in Counter([i for j in list_of_countries for i in j] ).most_common(25)]
for g in top_countries:
train['production_country_' + g] = train['all_countries'].apply(lambda x: 1 if g in x else 0)
 test['num_countries'] = test['production_countries'].apply(lambda x: len(x)if x != {} else 0)
 test['all_countries'] = test['production_countries'].apply(lambda x: ' '.join(sorted([i['name'] for i in x])) if x != {} else '')
 for g in top_countries:
test['production_country_' + g] = test['all_countries'].apply(lambda x: 1 if g in x else 0)
 train = train.drop(['production_countries', 'all_countries'], axis=1)
 test = test.drop(['production_countries', 'all_countries'], axis=1 )<define_variables>
def data_augment(image, label):
p_spatial = tf.random.uniform([], 0, 1.0, dtype=tf.float32)
 p_rotate = tf.random.uniform([], 0, 1.0, dtype=tf.float32)
 p_pixel_1 = tf.random.uniform([], 0, 1.0, dtype=tf.float32)
 p_pixel_2 = tf.random.uniform([], 0, 1.0, dtype=tf.float32)
 p_pixel_3 = tf.random.uniform([], 0, 1.0, dtype=tf.float32)
 p_crop = tf.random.uniform([], 0, 1.0, dtype=tf.float32)
 image = tf.image.random_flip_left_right(image)
 image = tf.image.random_flip_up_down(image)
 if p_spatial >.75:
image = tf.image.transpose(image)
 if p_rotate >.75:
image = tf.image.rot90(image, k=3)
 elif p_rotate >.5:
image = tf.image.rot90(image, k=2)
 elif p_rotate >.25:
image = tf.image.rot90(image, k=1)
 if p_pixel_1 >=.4:
image = tf.image.random_saturation(image, lower=.7, upper=1.3)
 if p_pixel_2 >=.4:
image = tf.image.random_contrast(image, lower=.8, upper=1.2)
 if p_pixel_3 >=.4:
image = tf.image.random_brightness(image, max_delta=.1)
 if p_crop >.7:
if p_crop >.9:
image = tf.image.central_crop(image, central_fraction=.7)
 elif p_crop >.8:
image = tf.image.central_crop(image, central_fraction=.8)
 else:
image = tf.image.central_crop(image, central_fraction=.9)
 elif p_crop >.4:
crop_size = tf.random.uniform([], int(HEIGHT*.8), HEIGHT, dtype=tf.int32)
 image = tf.image.random_crop(image, size=[crop_size, crop_size, CHANNELS])
 return image, label
for i, e in enumerate(train['spoken_languages'][:5]):
print(i, e )<count_values>
database_base_path = '/kaggle/input/cassava-leaf-disease-classification/'
submission = pd.read_csv(f'{database_base_path}sample_submission.csv')
 display(submission.head())
 TEST_FILENAMES = tf.io.gfile.glob(f'{database_base_path}test_tfrecords/ld_test*.tfrec')
 NUM_TEST_IMAGES = count_data_items(TEST_FILENAMES)
 print(f'GCS: test: {NUM_TEST_IMAGES}' )
print('Number of spoken languages in films')
 train['spoken_languages'].apply(lambda x: len(x)if x != {} else 0 ).value_counts()<count_values>
model_path_list = glob.glob('/kaggle/input/cassava-leaf-disease-training-with-tpu-v2-pods/*.h5')
 model_path_list.sort()
print('Models to predict:')
 print(*model_path_list, sep='
' )
list_of_languages = list(train['spoken_languages'].apply(lambda x: [i['name'] for i in x] if x != {} else [] ).values)
 Counter([i for j in list_of_languages for i in j] ).most_common(15 )<feature_engineering>
def model_fn(input_shape, N_CLASSES):
inputs = L.Input(shape=input_shape, name='input_image')
 base_model = efn.EfficientNetB4(input_tensor=inputs,
include_top=False,
weights=None,
pooling='avg')
 x = L.Dropout (.5 )(base_model.output)
 output = L.Dense(N_CLASSES, activation='softmax', name='output' )(x)
 model = Model(inputs=inputs, outputs=output)
 return model
with strategy.scope() :
model = model_fn(( None, None, CHANNELS), N_CLASSES)
 model.summary()
train['num_languages'] = train['spoken_languages'].apply(lambda x: len(x)if x != {} else 0)
 train['all_languages'] = train['spoken_languages'].apply(lambda x: ' '.join(sorted([i['name'] for i in x])) if x != {} else '')
 top_languages = [m[0] for m in Counter([i for j in list_of_languages for i in j] ).most_common(30)]
for g in top_languages:
train['language_' + g] = train['all_languages'].apply(lambda x: 1 if g in x else 0)
 test['num_languages'] = test['spoken_languages'].apply(lambda x: len(x)if x != {} else 0)
 test['all_languages'] = test['spoken_languages'].apply(lambda x: ' '.join(sorted([i['name'] for i in x])) if x != {} else '')
 for g in top_languages:
test['language_' + g] = test['all_languages'].apply(lambda x: 1 if g in x else 0)
 train = train.drop(['spoken_languages', 'all_languages'], axis=1)
 test = test.drop(['spoken_languages', 'all_languages'], axis=1 )<define_variables>
files_path = f'{database_base_path}test_images/'
test_size = len(os.listdir(files_path))
test_preds = np.zeros(( test_size, N_CLASSES))
for model_path in model_path_list:
print(model_path)
 K.clear_session()
model.load_weights(model_path)
 if TTA_STEPS > 0:
test_ds = get_dataset(files_path, tta=True ).repeat()
ct_steps = TTA_STEPS *(( test_size/BATCH_SIZE)+ 1)
 preds = model.predict(test_ds, steps=ct_steps, verbose=1)[:(test_size * TTA_STEPS)]
preds = np.mean(preds.reshape(test_size, TTA_STEPS, N_CLASSES, order='F'), axis=1)
 test_preds += preds / len(model_path_list)
 else:
test_ds = get_dataset(files_path, tta=False)
 x_test = test_ds.map(lambda image, image_name: image)
 test_preds += model.predict(x_test)/ len(model_path_list)
 test_preds = np.argmax(test_preds, axis=-1)
 test_names_ds = get_dataset(files_path)
 image_names = [img_name.numpy().decode('utf-8')for img, img_name in iter(test_names_ds.unbatch())]
<count_values><EOS> 
submission = pd.DataFrame({'image_id': image_names, 'label': test_preds})
 submission.to_csv('submission.csv', index=False)
 display(submission.head() )