Kaggle competition: Quora Insincere Questions Classification
<SOS> metric: FScore_1 Kaggle data source: quora-insincere-questions-classification<choose_model_class>
tqdm.pandas()
EFNS = [efn.EfficientNetB0, efn.EfficientNetB1, efn.EfficientNetB2, efn.EfficientNetB3,
efn.EfficientNetB4, efn.EfficientNetB5, efn.EfficientNetB6]
def build_model(dim=128, ef=0):
inp = tf.keras.layers.Input(shape=(dim,dim,3))
base = EFNS[ef](input_shape=(dim,dim,3),weights='imagenet',include_top=False)
 x = base(inp)
 x = tf.keras.layers.GlobalAveragePooling2D()(x)
 x = tf.keras.layers.Dense(1,activation='sigmoid' )(x)
 model = tf.keras.Model(inputs=inp,outputs=x)
 opt = tf.keras.optimizers.Adam(learning_rate=0.001)
 loss = tf.keras.losses.BinaryCrossentropy(label_smoothing=0.01)
 model.compile(optimizer=opt,loss=loss,metrics=['AUC'])
 return model<init_hyperparams>
train = pd.read_csv(".. /input/train.csv")
 test = pd.read_csv(".. /input/test.csv")
 print("Train shape : ", train.shape)
 print("Test shape : ", test.shape )
def get_lr_callback(batch_size=8):
lr_start = 0.000005
lr_max = 0.00000125 * REPLICAS * batch_size
lr_min = 0.000001
lr_ramp_ep = 5
lr_sus_ep = 0
lr_decay = 0.8
def lrfn(epoch):
if epoch < lr_ramp_ep:
lr =(lr_max - lr_start)/ lr_ramp_ep * epoch + lr_start
elif epoch < lr_ramp_ep + lr_sus_ep:
lr = lr_max
else:
lr =(lr_max - lr_min)* lr_decay**(epoch - lr_ramp_ep - lr_sus_ep)+ lr_min
return lr
lr_callback = tf.keras.callbacks.LearningRateScheduler(lrfn, verbose=False)
 return lr_callback<define_variables>
train["question_text"] = train["question_text"].str.lower()
test["question_text"] = test["question_text"].str.lower()
puncts = [',', '.', '"', ':', ')', '(', '-', '!', '?', '|', ';', "'", '$', '&', '/', '[', ']', '>', '%', '=', '
'·', '_', '{', '}', '©', '^', '®', '`', '<', '→', '°', '€', '™', '›', '♥', '←', '×', '§', '″', '′', 'Â', '█', '½', 'à', '…',
'“', '★', '”', '–', '●', 'â', '►', '−', '¢', '²', '¬', '░', '¶', '↑', '±', '¿', '▾', '═', '¦', '║', '―', '¥', '▓', '—', '‹', '─',
'▒', '：', '¼', '⊕', '▼', '▪', '†', '■', '’', '▀', '¨', '▄', '♫', '☆', 'é', '¯', '♦', '¤', '▲', 'è', '¸', '¾', 'Ã', '⋅', '‘', '∞',
'∙', '）', '↓', '、', '│', '（', '»', '，', '♪', '╩', '╚', '³', '・', '╦', '╣', '╔', '╗', '▬', '❤', 'ï', 'Ø', '¹', '≤', '‡', '√', ]
def clean_text(x):
x = str(x)
 for punct in puncts:
x = x.replace(punct, f' {punct} ')
 return x
train["question_text"] = train["question_text"].apply(lambda x: clean_text(x))
test["question_text"] = test["question_text"].apply(lambda x: clean_text(x))
VERBOSE = 0
DISPLAY_PLOT = True
skf = KFold(n_splits=FOLDS,shuffle=True,random_state=SEED)
 oof_pred = []; oof_tar = []; oof_val = []; oof_names = []; oof_folds = []
preds = np.zeros(( count_data_items(files_test),1))
for fold,(idxT,idxV)in enumerate(skf.split(np.arange(15))):
if DEVICE=='TPU':
if tpu: tf.tpu.experimental.initialize_tpu_system(tpu)
 print('
print(' 
(IMG_SIZES[fold],EFF_NETS[fold],BATCH_SIZES[fold]*REPLICAS))
files_train = tf.io.gfile.glob([GCS_PATH[fold] + '/train%.2i*.tfrec'%x for x in idxT])
 if INC2019[fold]:
files_train += tf.io.gfile.glob([GCS_PATH2[fold] + '/train%.2i*.tfrec'%x for x in idxT*2+1])
 print('
if INC2018[fold]:
files_train += tf.io.gfile.glob([GCS_PATH2[fold] + '/train%.2i*.tfrec'%x for x in idxT*2])
 print('
np.random.shuffle(files_train); print('
files_valid = tf.io.gfile.glob([GCS_PATH[fold] + '/train%.2i*.tfrec'%x for x in idxV])
 files_test = np.sort(np.array(tf.io.gfile.glob(GCS_PATH[fold] + '/test*.tfrec')))
 K.clear_session()
with strategy.scope() :
model = build_model(dim=IMG_SIZES[fold],ef=EFF_NETS[fold])
 sv = tf.keras.callbacks.ModelCheckpoint(
 'fold-%i.h5'%fold, monitor='val_loss', verbose=0, save_best_only=True,
save_weights_only=True, mode='min', save_freq='epoch')
 print('Training...')
 history = model.fit(
 get_dataset(files_train, augment=True, shuffle=True, repeat=True,
dim=IMG_SIZES[fold], batch_size = BATCH_SIZES[fold]),
epochs=EPOCHS[fold], callbacks = [sv,get_lr_callback(BATCH_SIZES[fold])],
steps_per_epoch=count_data_items(files_train)/BATCH_SIZES[fold]//REPLICAS,
validation_data=get_dataset(files_valid,augment=False,shuffle=False,
repeat=False,dim=IMG_SIZES[fold]),
verbose=VERBOSE 
)
 print('Loading best model...')
 model.load_weights('fold-%i.h5'%fold)
 print('Predicting OOF with TTA...')
 ds_valid = get_dataset(files_valid,labeled=False,return_image_names=False,augment=True,
repeat=True,shuffle=False,dim=IMG_SIZES[fold],batch_size=BATCH_SIZES[fold]*4)
 ct_valid = count_data_items(files_valid); STEPS = TTA * ct_valid/BATCH_SIZES[fold]/4/REPLICAS
pred = model.predict(ds_valid,steps=STEPS,verbose=VERBOSE)[:TTA*ct_valid,]
oof_pred.append(np.mean(pred.reshape(( ct_valid,TTA),order='F'),axis=1))
ds_valid = get_dataset(files_valid, augment=False, repeat=False, dim=IMG_SIZES[fold],
labeled=True, return_image_names=True)
 oof_tar.append(np.array([target.numpy() for img, target in iter(ds_valid.unbatch())]))
oof_folds.append(np.ones_like(oof_tar[-1],dtype='int8')*fold)
 ds = get_dataset(files_valid, augment=False, repeat=False, dim=IMG_SIZES[fold],
labeled=False, return_image_names=True)
 oof_names.append(np.array([img_name.numpy().decode("utf-8")for img, img_name in iter(ds.unbatch())]))
print('Predicting Test with TTA...')
 ds_test = get_dataset(files_test,labeled=False,return_image_names=False,augment=True,
repeat=True,shuffle=False,dim=IMG_SIZES[fold],batch_size=BATCH_SIZES[fold]*4)
 ct_test = count_data_items(files_test); STEPS = TTA * ct_test/BATCH_SIZES[fold]/4/REPLICAS
pred = model.predict(ds_test,steps=STEPS,verbose=VERBOSE)[:TTA*ct_test,]
preds[:,0] += np.mean(pred.reshape(( ct_test,TTA),order='F'),axis=1)* WGTS[fold]
auc = roc_auc_score(oof_tar[-1],oof_pred[-1])
 oof_val.append(np.max(history.history['val_auc']))
print('
if DISPLAY_PLOT:
plt.figure(figsize=(15,5))
plt.plot(np.arange(EPOCHS[fold]),history.history['auc'],'-o',label='Train AUC',color='
plt.plot(np.arange(EPOCHS[fold]),history.history['val_auc'],'-o',label='Val AUC',color='
x = np.argmax(history.history['val_auc']); y = np.max(history.history['val_auc'])
 xdist = plt.xlim() [1] - plt.xlim() [0]; ydist = plt.ylim() [1] - plt.ylim() [0]
plt.scatter(x,y,s=200,color='
%.2f'%y,size=14)
 plt.ylabel('AUC',size=14); plt.xlabel('Epoch',size=14)
 plt.legend(loc=2)
 plt2 = plt.gca().twinx()
plt2.plot(np.arange(EPOCHS[fold]),history.history['loss'],'-o',label='Train Loss',color='
plt2.plot(np.arange(EPOCHS[fold]),history.history['val_loss'],'-o',label='Val Loss',color='
x = np.argmin(history.history['val_loss']); y = np.min(history.history['val_loss'])
 ydist = plt.ylim() [1] - plt.ylim() [0]
plt.scatter(x,y,s=200,color='
plt.ylabel('Loss',size=14)
 plt.title('FOLD %i - Image Size %i, EfficientNet B%i, inc2019=%i, inc2018=%i'% 
(fold+1,IMG_SIZES[fold],EFF_NETS[fold],INC2019[fold],INC2018[fold]),size=18)
 plt.legend(loc=3)
 plt.show()<save_to_csv>
embed_size = 300
max_features = None
maxlen = 72
X = train["question_text"].fillna("_na_" ).values
X_test = test["question_text"].fillna("_na_" ).values
tokenizer = Tokenizer(num_words=max_features)
 tokenizer.fit_on_texts(list(X))
X = tokenizer.texts_to_sequences(X)
 X_test = tokenizer.texts_to_sequences(X_test)
 X = pad_sequences(X, maxlen=maxlen)
 X_test = pad_sequences(X_test, maxlen=maxlen)
 Y = train['target'].values
sub = test[['qid']]
oof = np.concatenate(oof_pred); true = np.concatenate(oof_tar);
names = np.concatenate(oof_names); folds = np.concatenate(oof_folds)
 auc = roc_auc_score(true,oof)
 print('Overall OOF AUC with TTA = %.3f'%auc)
 df_oof = pd.DataFrame(dict(
 image_name = names, target=true, pred = oof, fold=folds))
df_oof.to_csv('oof.csv',index=False)
 df_oof.head()<create_dataframe>
del train, test
gc.collect()
ds = get_dataset(files_test, augment=False, repeat=False, dim=IMG_SIZES[fold],
labeled=False, return_image_names=True)
 image_names = np.array([img_name.numpy().decode("utf-8")
 for img, img_name in iter(ds.unbatch())] )<save_to_csv>
word_index = tokenizer.word_index
max_features = len(word_index)+1
def load_glove(word_index):
EMBEDDING_FILE = '.. /input/embeddings/glove.840B.300d/glove.840B.300d.txt'
def get_coefs(word,*arr): return word, np.asarray(arr, dtype='float32')
 embeddings_index = dict(get_coefs(*o.split(" ")) for o in open(EMBEDDING_FILE)if o.split(" ")[0] in word_index)
 all_embs = np.stack(embeddings_index.values())
 emb_mean,emb_std = all_embs.mean() , all_embs.std()
embed_size = all_embs.shape[1]
embedding_matrix = np.random.normal(emb_mean, emb_std,(max_features, embed_size))
for word, i in word_index.items() :
if i >= max_features: continue
embedding_vector = embeddings_index.get(word)
 if embedding_vector is not None: embedding_matrix[i] = embedding_vector
return embedding_matrix
def load_fasttext(word_index):
EMBEDDING_FILE = '.. /input/embeddings/wiki-news-300d-1M/wiki-news-300d-1M.vec'
def get_coefs(word,*arr): return word, np.asarray(arr, dtype='float32')
 embeddings_index = dict(get_coefs(*o.split(" ")) for o in open(EMBEDDING_FILE)if len(o)>100 and o.split(" ")[0] in word_index)
 all_embs = np.stack(embeddings_index.values())
 emb_mean,emb_std = all_embs.mean() , all_embs.std()
embed_size = all_embs.shape[1]
embedding_matrix = np.random.normal(emb_mean, emb_std,(max_features, embed_size))
for word, i in word_index.items() :
if i >= max_features: continue
embedding_vector = embeddings_index.get(word)
 if embedding_vector is not None: embedding_matrix[i] = embedding_vector
return embedding_matrix
def load_para(word_index):
EMBEDDING_FILE = '.. /input/embeddings/paragram_300_sl999/paragram_300_sl999.txt'
def get_coefs(word,*arr): return word, np.asarray(arr, dtype='float32')
 embeddings_index = dict(get_coefs(*o.split(" ")) for o in open(EMBEDDING_FILE, encoding="utf8", errors='ignore')if len(o)>100 and o.split(" ")[0] in word_index)
 all_embs = np.stack(embeddings_index.values())
 emb_mean,emb_std = all_embs.mean() , all_embs.std()
embed_size = all_embs.shape[1]
embedding_matrix = np.random.normal(emb_mean, emb_std,(max_features, embed_size))
for word, i in word_index.items() :
if i >= max_features: continue
embedding_vector = embeddings_index.get(word)
 if embedding_vector is not None: embedding_matrix[i] = embedding_vector
return embedding_matrix
submission = pd.DataFrame(dict(image_name=image_names, target=preds[:,0]))
submission = submission.sort_values('image_name')
 submission.to_csv('submission.csv', index=False)
 submission.head()<define_variables>
embedding_matrix_1 = load_glove(word_index)
 embedding_matrix_3 = load_para(word_index)
 embedding_matrix = np.mean(( embedding_matrix_1, embedding_matrix_3), axis=0)
 del embedding_matrix_1, embedding_matrix_3
gc.collect()
np.shape(embedding_matrix )
DEVICE = "TPU"
CFG = dict(
 net_count = 5,
batch_size = 16,
read_size = 256,
crop_size = 250,
net_size = 224,
LR_START = 0.000005,
LR_MAX = 0.000020,
LR_MIN = 0.000001,
LR_RAMPUP_EPOCHS = 5,
LR_SUSTAIN_EPOCHS = 0,
LR_EXP_DECAY = 0.8,
epochs = 12,
rot = 180.0,
shr = 2.0,
hzoom = 8.0,
wzoom = 8.0,
hshift = 8.0,
wshift = 8.0,
optimizer = 'adam',
label_smooth_fac = 0.05,
tta_steps = 25
)<install_modules>
def squash(x, axis=-1):
s_squared_norm = K.sum(K.square(x), axis, keepdims=True)
 scale = K.sqrt(s_squared_norm + K.epsilon())
 return x / scale
class Capsule(Layer):
def __init__(self, num_capsule, dim_capsule, routings=3, kernel_size=(9, 1), share_weights=True,
activation='default', **kwargs):
super(Capsule, self ).__init__(**kwargs)
 self.num_capsule = num_capsule
self.dim_capsule = dim_capsule
self.routings = routings
self.kernel_size = kernel_size
self.share_weights = share_weights
if activation == 'default':
self.activation = squash
else:
self.activation = Activation(activation)
 def build(self, input_shape):
super(Capsule, self ).build(input_shape)
 input_dim_capsule = input_shape[-1]
if self.share_weights:
self.W = self.add_weight(name='capsule_kernel',
shape=(1, input_dim_capsule,
self.num_capsule * self.dim_capsule),
initializer='glorot_uniform',
trainable=True)
 else:
input_num_capsule = input_shape[-2]
self.W = self.add_weight(name='capsule_kernel',
shape=(input_num_capsule,
input_dim_capsule,
self.num_capsule * self.dim_capsule),
initializer='glorot_uniform',
trainable=True)
 def call(self, u_vecs):
if self.share_weights:
u_hat_vecs = K.conv1d(u_vecs, self.W)
 else:
u_hat_vecs = K.local_conv1d(u_vecs, self.W, [1], [1])
 batch_size = K.shape(u_vecs)[0]
input_num_capsule = K.shape(u_vecs)[1]
u_hat_vecs = K.reshape(u_hat_vecs,(batch_size, input_num_capsule,
self.num_capsule, self.dim_capsule))
u_hat_vecs = K.permute_dimensions(u_hat_vecs,(0, 2, 1, 3))
b = K.zeros_like(u_hat_vecs[:, :, :, 0])
 for i in range(self.routings):
b = K.permute_dimensions(b,(0, 2, 1))
c = K.softmax(b)
 c = K.permute_dimensions(c,(0, 2, 1))
b = K.permute_dimensions(b,(0, 2, 1))
outputs = self.activation(K.batch_dot(c, u_hat_vecs, [2, 2]))
if i < self.routings - 1:
b = K.batch_dot(outputs, u_hat_vecs, [2, 3])
 return outputs
def compute_output_shape(self, input_shape):
return(None, self.num_capsule, self.dim_capsule )
!pip install -q efficientnet<set_options>
def capsule(inp):
x = Embedding(max_features, embed_size, weights=[embedding_matrix], trainable=False )(inp)
 x = SpatialDropout1D(rate=0.24 )(x)
 x = Bidirectional(CuDNNLSTM(100, return_sequences=True,
kernel_initializer=glorot_normal(seed=123000), recurrent_initializer=orthogonal(gain=1.0, seed=10000)) )(x)
 x = Capsule(num_capsule=10, dim_capsule=10, routings=4, share_weights=True )(x)
 x = Flatten()(x)
 x = Dense(100, activation='relu', kernel_initializer=glorot_normal(seed=123000))(x)
 x = Dropout(0.2 )(x)
 x = BatchNormalization()(x)
 x = Dense(1, activation="sigmoid" )(x)
 model = Model(inputs=inp, outputs=x)
 model.compile(loss='binary_crossentropy', optimizer=Adam() ,)
 return model
random.seed(a=42)
<load_from_csv>
def f1_smart(y_true, y_pred):
args = np.argsort(y_pred)
 tp = y_true.sum()
fs =(tp - np.cumsum(y_true[args[:-1]])) / np.arange(y_true.shape[0] + tp - 1, tp, -1)
 res_idx = np.argmax(fs)
 return 2 * fs[res_idx],(y_pred[args[res_idx]] + y_pred[args[res_idx + 1]])/ 2
BASEPATH = ".. /input/siim-isic-melanoma-classification"
df_train = pd.read_csv(os.path.join(BASEPATH, 'train.csv'))
df_test = pd.read_csv(os.path.join(BASEPATH, 'test.csv'))
df_sub = pd.read_csv(os.path.join(BASEPATH, 'sample_submission.csv'))
GCS_PATH = KaggleDatasets().get_gcs_path('melanoma-256x256')
 files_train = np.sort(np.array(tf.io.gfile.glob(GCS_PATH + '/train*.tfrec')))
 files_test = np.sort(np.array(tf.io.gfile.glob(GCS_PATH + '/test*.tfrec')) )<choose_model_class>
f1, threshold = f1_smart(np.squeeze(Y), oof)
 print('Optimal F1: {:.4f} at threshold: {:.4f}'.format(f1, threshold))
if DEVICE == "TPU":
print("connecting to TPU...")
 try:
tpu = tf.distribute.cluster_resolver.TPUClusterResolver()
print('Running on TPU ', tpu.master())
 except ValueError:
print("Could not connect to TPU")
 tpu = None
if tpu:
try:
print("initializing TPU...")
 tf.config.experimental_connect_to_cluster(tpu)
 tf.tpu.experimental.initialize_tpu_system(tpu)
 strategy = tf.distribute.experimental.TPUStrategy(tpu)
 print("TPU initialized")
 except _:
print("failed to initialize TPU")
 else:
DEVICE = "GPU"
if DEVICE != "TPU":
print("Using default strategy for CPU and single GPU")
 strategy = tf.distribute.get_strategy()
if DEVICE == "GPU":
print("Num GPUs Available: ", len(tf.config.experimental.list_physical_devices('GPU')))
 AUTO = tf.data.experimental.AUTOTUNE
REPLICAS = strategy.num_replicas_in_sync
print(f'REPLICAS: {REPLICAS}' )<normalization>
np.mean(bestscore), np.mean(logloss )
def get_mat(rotation, shear, height_zoom, width_zoom, height_shift, width_shift):
rotation = math.pi * rotation / 180.
 shear = math.pi * shear / 180.
 def get_3x3_mat(lst):
return tf.reshape(tf.concat([lst],axis=0), [3,3])
 c1 = tf.math.cos(rotation)
 s1 = tf.math.sin(rotation)
 one = tf.constant([1],dtype='float32')
 zero = tf.constant([0],dtype='float32')
 rotation_matrix = get_3x3_mat([c1, s1, zero,
-s1, c1, zero,
zero, zero, one])
 c2 = tf.math.cos(shear)
 s2 = tf.math.sin(shear)
 shear_matrix = get_3x3_mat([one, s2, zero,
zero, c2, zero,
zero, zero, one])
 zoom_matrix = get_3x3_mat([one/height_zoom, zero, zero,
zero, one/width_zoom, zero,
zero, zero, one])
 shift_matrix = get_3x3_mat([one, zero, height_shift,
zero, one, width_shift,
zero, zero, one])
 return K.dot(K.dot(rotation_matrix, shear_matrix),
K.dot(zoom_matrix, shift_matrix))
def transform(image, cfg):
DIM = cfg["read_size"]
XDIM = DIM%2
rot = cfg['rot'] * tf.random.normal([1], dtype='float32')
 shr = cfg['shr'] * tf.random.normal([1], dtype='float32')
 h_zoom = 1.0 + tf.random.normal([1], dtype='float32')/ cfg['hzoom']
w_zoom = 1.0 + tf.random.normal([1], dtype='float32')/ cfg['wzoom']
h_shift = cfg['hshift'] * tf.random.normal([1], dtype='float32')
 w_shift = cfg['wshift'] * tf.random.normal([1], dtype='float32')
 m = get_mat(rot,shr,h_zoom,w_zoom,h_shift,w_shift)
 x = tf.repeat(tf.range(DIM//2, -DIM//2,-1), DIM)
 y = tf.tile(tf.range(-DIM//2, DIM//2), [DIM])
 z = tf.ones([DIM*DIM], dtype='int32')
 idx = tf.stack([x,y,z])
 idx2 = K.dot(m, tf.cast(idx, dtype='float32'))
idx2 = K.cast(idx2, dtype='int32')
 idx2 = K.clip(idx2, -DIM//2+XDIM+1, DIM//2)
 idx3 = tf.stack([DIM//2-idx2[0,], DIM//2-1+idx2[1,]])
 d = tf.gather_nd(image, tf.transpose(idx3))
return tf.reshape(d,[DIM, DIM,3] )<prepare_x_and_y>
y_test = y_test.reshape(( -1, 1))
pred_test_y =(y_test>threshold ).astype(int)
 sub['prediction'] = pred_test_y
sub.to_csv("submission.csv", index=False )