update dataset with task1
Browse files- skin-lesion.py +42 -8
skin-lesion.py
CHANGED
@@ -60,7 +60,8 @@ _URLS = {
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"milia_like_cyst": "https://storage.googleapis.com/lesion-dataset/dataset-milia_like_cyst.zip",
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"negative_network": "https://storage.googleapis.com/lesion-dataset/dataset-negative_network.zip",
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"pigment_network": "https://storage.googleapis.com/lesion-dataset/dataset-pigment_network.zip",
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"streaks": "https://storage.googleapis.com/lesion-dataset/dataset-streaks.zip"
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}
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@@ -76,9 +77,10 @@ class LesionDataset(datasets.GeneratorBasedBuilder):
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datasets.BuilderConfig(name="milia_like_cyst", version=VERSION, description="This will return the dataset with only milia_like_cyst class"),
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datasets.BuilderConfig(name="negative_network", version=VERSION, description="This will return the dataset with only negative_network class"),
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datasets.BuilderConfig(name="pigment_network", version=VERSION, description="This will return the dataset with only pigment_network class"),
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datasets.BuilderConfig(name="streaks", version=VERSION, description="This will return the dataset with only streaks class")
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]
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DEFAULT_CONFIG_NAME = "
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def _info(self):
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# TODO: This method specifies the datasets.DatasetInfo object which contains informations and typings for the dataset
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@@ -93,8 +95,8 @@ class LesionDataset(datasets.GeneratorBasedBuilder):
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"label4": datasets.Image(),
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}
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)
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-
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elif self.config.name in ['globules', 'milia_like_cyst', 'negative_network', 'pigment_network', 'streaks']:
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features = datasets.Features(
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{
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"image": datasets.Image(),
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@@ -144,13 +146,45 @@ class LesionDataset(datasets.GeneratorBasedBuilder):
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'streaks': 4
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}
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Training_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/
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"split": "train",
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},
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),
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@@ -159,7 +193,7 @@ class LesionDataset(datasets.GeneratorBasedBuilder):
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Validation_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/
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"split": "validation",
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},
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),
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@@ -168,7 +202,7 @@ class LesionDataset(datasets.GeneratorBasedBuilder):
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Test_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/
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"split": "test"
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},
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),
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"milia_like_cyst": "https://storage.googleapis.com/lesion-dataset/dataset-milia_like_cyst.zip",
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"negative_network": "https://storage.googleapis.com/lesion-dataset/dataset-negative_network.zip",
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"pigment_network": "https://storage.googleapis.com/lesion-dataset/dataset-pigment_network.zip",
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"streaks": "https://storage.googleapis.com/lesion-dataset/dataset-streaks.zip",
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"task1": "https://storage.googleapis.com/lesion-dataset/dataset-task1.zip",
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}
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datasets.BuilderConfig(name="milia_like_cyst", version=VERSION, description="This will return the dataset with only milia_like_cyst class"),
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datasets.BuilderConfig(name="negative_network", version=VERSION, description="This will return the dataset with only negative_network class"),
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datasets.BuilderConfig(name="pigment_network", version=VERSION, description="This will return the dataset with only pigment_network class"),
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+
datasets.BuilderConfig(name="streaks", version=VERSION, description="This will return the dataset with only streaks class"),
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datasets.BuilderConfig(name="task1", version=VERSION, description="This will return the dataset for task1"),
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]
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DEFAULT_CONFIG_NAME = "task1" # It's not mandatory to have a default configuration. Just use one if it make sense.
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def _info(self):
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# TODO: This method specifies the datasets.DatasetInfo object which contains informations and typings for the dataset
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"label4": datasets.Image(),
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}
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)
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+
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elif self.config.name in ['globules', 'milia_like_cyst', 'negative_network', 'pigment_network', 'streaks', 'task1']:
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features = datasets.Features(
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{
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"image": datasets.Image(),
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'streaks': 4
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}
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# Task 2
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if self.config.name in ['full', 'globules', 'milia_like_cyst', 'negative_network', 'pigment_network', 'streaks']:
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Training_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task2_Training_GroundTruth_v3"),
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"split": "train",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Validation_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task2_Validation_GroundTruth"),
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"split": "validation",
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},
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Test_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task2_Test_GroundTruth"),
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"split": "test"
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},
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),
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]
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Training_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1_Training_GroundTruth"),
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"split": "train",
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},
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),
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Validation_Input"),
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"labelpath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1_Validation_GroundTruth"),
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"split": "validation",
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},
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),
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# These kwargs will be passed to _generate_examples
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gen_kwargs={
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"filepath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1-2_Test_Input"),
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+
"labelpath": os.path.join(data_dir, f"{base_name}/ISIC2018_Task1_Test_GroundTruth"),
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"split": "test"
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},
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),
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