Add metadata files (figures and data source citations)
Browse files- metadata/data-bib.bib +92 -0
- metadata/figures/DataProcessingPipelineFishVista.png +3 -0
- metadata/figures/FishVista.pdf +0 -0
- metadata/figures/FishVista.png +3 -0
- metadata/figures/IdentificationOriginalResults.pdf +0 -0
- metadata/figures/IdentificationOriginalResults.png +3 -0
- metadata/figures/clf_imbalance.pdf +0 -0
- metadata/figures/clf_imbalance.png +3 -0
metadata/data-bib.bib
ADDED
@@ -0,0 +1,92 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
+
@dataset{inhs,
|
2 |
+
title ={INHS collections data} ,
|
3 |
+
journal ={http://biocoll.inhs.illinois.edu/portal/index.php} ,
|
4 |
+
year ={2022}
|
5 |
+
}
|
6 |
+
|
7 |
+
@article{jfbm,
|
8 |
+
title ={JFBM Bell Atlas} ,
|
9 |
+
journal = {http://bellatlas.umn.edu/index.php} ,
|
10 |
+
year = 2022
|
11 |
+
}
|
12 |
+
|
13 |
+
@article{ummz,
|
14 |
+
title ={UMMZ University of Michigan Museum of Zoology, Division of Fishes},
|
15 |
+
journal = {https://ipt.lsa.umich.edu/resource?r=ummz\_fish}
|
16 |
+
}
|
17 |
+
|
18 |
+
@article{umadison,
|
19 |
+
title ={University of Wisconsin-Madison Zoological Museum - Fish} ,
|
20 |
+
journal ={http://zoology.wisc.edu/uwzm/}
|
21 |
+
}
|
22 |
+
|
23 |
+
@article{fmnh,
|
24 |
+
title ={FMNH Field Museum of Natural History (Zoology) Fish Collection} ,
|
25 |
+
journal ={Field Museum. https://fmipt.fieldmuseum.org/ipt/resource?r=fmnh_fishes}
|
26 |
+
}
|
27 |
+
|
28 |
+
@article{osum,
|
29 |
+
author ={Daly M, Johnson N} ,
|
30 |
+
title ={Ohio State University Fish Division (OSUM)} ,
|
31 |
+
journal ={Museum of Biological Diversity, The Ohio State University. Occurrence dataset, https://doi.org/10.15468/subsl8},
|
32 |
+
year = 2018
|
33 |
+
}
|
34 |
+
|
35 |
+
@article{fishair,
|
36 |
+
title ={Multimedia of Fish Specimen and associated metadata. Fish-AIR},
|
37 |
+
journal ={Biology guided Neural Network. Tulane University Biodiversity Research Institute (https://fishair.org).}
|
38 |
+
}
|
39 |
+
|
40 |
+
@article{Morphbank,
|
41 |
+
title ={Morphbank: Biological Imaging (https://www.morphbank.net/)} ,
|
42 |
+
journal ={Florida State University, Department of Scientific Computing, Tallahassee, FL 32306-4026 USA.}
|
43 |
+
}
|
44 |
+
@article{glin,
|
45 |
+
title ={Great Lakes Invasives Network Project},
|
46 |
+
journal = {https://greatlakesinvasives.org/portal/index.php}
|
47 |
+
}
|
48 |
+
|
49 |
+
@article{IDigBio,
|
50 |
+
title ={iDigBio } ,
|
51 |
+
journal ={http://www.idigbio.org/portal},
|
52 |
+
year = {2020}
|
53 |
+
}
|
54 |
+
|
55 |
+
@incollection{mabee2018phenoscape,
|
56 |
+
title={Phenoscape: semantic analysis of organismal traits and genes yields insights in evolutionary biology},
|
57 |
+
author={Mabee, Paula M and Dahdul, Wasila M and Balhoff, James P and Lapp, Hilmar and Manda, Prashanti and Uyeda, Josef and Vision, Todd and Westerfield, Monte},
|
58 |
+
booktitle={Application of Semantic Technology in Biodiversity Science},
|
59 |
+
pages={207--224},
|
60 |
+
year={2018},
|
61 |
+
publisher={IOS Press}
|
62 |
+
}
|
63 |
+
|
64 |
+
@online{fishbase,
|
65 |
+
author = {Froese, R. and Pauly, D.},
|
66 |
+
title = {FishBase},
|
67 |
+
year = {2024},
|
68 |
+
note = {World Wide Web electronic publication. Version 02/2024},
|
69 |
+
url = {http://www.fishbase.org}
|
70 |
+
}
|
71 |
+
|
72 |
+
@article{edmunds2015phenoscape,
|
73 |
+
title={Phenoscape: identifying candidate genes for evolutionary phenotypes},
|
74 |
+
author={Edmunds, Richard C and Su, Baofeng and Balhoff, James P and Eames, B Frank and Dahdul, Wasila M and Lapp, Hilmar and Lundberg, John G and Vision, Todd J and Dunham, Rex A and Mabee, Paula M and others},
|
75 |
+
journal={Molecular Biology and Evolution},
|
76 |
+
volume={33},
|
77 |
+
number={1},
|
78 |
+
pages={13--24},
|
79 |
+
year={2015},
|
80 |
+
publisher={Society for Molecular Biology and Evolution}
|
81 |
+
}
|
82 |
+
|
83 |
+
@article{mabee2012500,
|
84 |
+
title={500,000 fish phenotypes: The new informatics landscape for evolutionary and developmental biology of the vertebrate skeleton},
|
85 |
+
author={Mabee, Paula and Balhoff, James P and Dahdul, Wasila M and Lapp, Hilmar and Midford, Peter E and Vision, Todd J and Westerfield, Monte},
|
86 |
+
journal={Journal of Applied Ichthyology},
|
87 |
+
volume={28},
|
88 |
+
number={3},
|
89 |
+
pages={300--305},
|
90 |
+
year={2012},
|
91 |
+
publisher={Wiley Online Library}
|
92 |
+
}
|
metadata/figures/DataProcessingPipelineFishVista.png
ADDED
Git LFS Details
|
metadata/figures/FishVista.pdf
ADDED
Binary file (852 kB). View file
|
|
metadata/figures/FishVista.png
ADDED
Git LFS Details
|
metadata/figures/IdentificationOriginalResults.pdf
ADDED
Binary file (19.1 kB). View file
|
|
metadata/figures/IdentificationOriginalResults.png
ADDED
Git LFS Details
|
metadata/figures/clf_imbalance.pdf
ADDED
Binary file (16.4 kB). View file
|
|
metadata/figures/clf_imbalance.png
ADDED
Git LFS Details
|