Commit
•
70dcf29
1
Parent(s):
146f108
log broken pngs
Browse files- scripts/DL_save_nifti.py +2 -0
scripts/DL_save_nifti.py
CHANGED
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@@ -53,6 +53,8 @@ if __name__ == '__main__':
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os.mkdir(dir_out)
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for idx, (img_dir, range, spacing) in tqdm(enumerate(zip(img_dirs, ranges, spacings)), total=len(img_dirs)):
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ims = load_slices(img_dir, np.arange(*range))
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fn_out = f'{img_dir}_{range[0]:03d}-{range[-1]:03d}.nii.gz'
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slices2nifti(ims, fn_out, spacing)
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os.mkdir(dir_out)
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for idx, (img_dir, range, spacing) in tqdm(enumerate(zip(img_dirs, ranges, spacings)), total=len(img_dirs)):
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# Broken: ./Images_png/001821_07_01/372.png
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# Broken: ./Images_png/002161_04_02/116.png
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ims = load_slices(img_dir, np.arange(*range))
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fn_out = f'{img_dir}_{range[0]:03d}-{range[-1]:03d}.nii.gz'
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slices2nifti(ims, fn_out, spacing)
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