Upload folder using huggingface_hub
Browse files
train/SB/SA7/config/config_sacfm.py
CHANGED
|
@@ -26,7 +26,7 @@ class SACFMConfig:
|
|
| 26 |
noise_type: str = "Gaussian"
|
| 27 |
print_every: int = 5000
|
| 28 |
mode: str = "predict_y"
|
| 29 |
-
result_path: str = "/
|
| 30 |
fusion_method: str = "differential_perceiver"
|
| 31 |
infer_top_gene: int = 1000
|
| 32 |
n_top_genes: int = 5000
|
|
|
|
| 26 |
noise_type: str = "Gaussian"
|
| 27 |
print_every: int = 5000
|
| 28 |
mode: str = "predict_y"
|
| 29 |
+
result_path: str = "./result"
|
| 30 |
fusion_method: str = "differential_perceiver"
|
| 31 |
infer_top_gene: int = 1000
|
| 32 |
n_top_genes: int = 5000
|
train/SB/SA7/run_sacfm.sh
CHANGED
|
@@ -7,8 +7,12 @@
|
|
| 7 |
|
| 8 |
export PYTORCH_CUDA_ALLOC_CONF=max_split_size_mb:256
|
| 9 |
|
| 10 |
-
|
| 11 |
-
cd
|
|
|
|
|
|
|
|
|
|
|
|
|
| 12 |
|
| 13 |
python scripts/run_sacfm.py \
|
| 14 |
--d-model 128 \
|
|
@@ -36,5 +40,5 @@ python scripts/run_sacfm.py \
|
|
| 36 |
--ode-steps 20 \
|
| 37 |
--sigma-scale 0.3 \
|
| 38 |
--gene-weight-alpha 2.0 \
|
| 39 |
-
--result-path /
|
| 40 |
--exp-name sacfm_ss03_gw2
|
|
|
|
| 7 |
|
| 8 |
export PYTORCH_CUDA_ALLOC_CONF=max_split_size_mb:256
|
| 9 |
|
| 10 |
+
# Auto-detect paths: grn_sacfm/ -> GRN/ -> lfj/
|
| 11 |
+
SCRIPT_DIR="$(cd "$(dirname "$0")" && pwd)"
|
| 12 |
+
LFJ_ROOT="$(cd "$SCRIPT_DIR/../.." && pwd)"
|
| 13 |
+
|
| 14 |
+
source "$LFJ_ROOT/stack_env/bin/activate"
|
| 15 |
+
cd "$SCRIPT_DIR"
|
| 16 |
|
| 17 |
python scripts/run_sacfm.py \
|
| 18 |
--d-model 128 \
|
|
|
|
| 40 |
--ode-steps 20 \
|
| 41 |
--sigma-scale 0.3 \
|
| 42 |
--gene-weight-alpha 2.0 \
|
| 43 |
+
--result-path "$LFJ_ROOT/GRN/result/sacfm" \
|
| 44 |
--exp-name sacfm_ss03_gw2
|