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README.md

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 license: apache-2.0
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+
+# The Pile -- PubMed Abstracts (refined by Data-Juicer)
+
+A refined version of PubMed Abstracts dataset in The Pile by [Data-Juicer](https://github.com/alibaba/data-juicer). Removing some "bad" samples from the original dataset to make it higher-quality.
+
+This dataset is usually used to pretrain a Large Language Model.
+
+**Notice**: Here is a small subset for previewing. The whole dataset is available [here](https://dail-wlcb.oss-cn-wulanchabu.aliyuncs.com/LLM_data/our_refined_datasets/pretraining/the-pile-pubmed-abstract-refine-result.jsonl) (About 24G).
+
+## Dataset Information
+
+- Number of samples: 371,331 (Keep ~99.55% from the original dataset)
+
+## Refining Recipe
+```yaml
+# global parameters
+project_name: 'Data-Juicer-recipes-pubmed-abstract'
+dataset_path: '/path/to/your/dataset'  # path to your dataset directory or file
+export_path: '/path/to/your/dataset.jsonl'
+
+np: 50  # number of subprocess to process your dataset
+open_tracer: true
+
+# process schedule
+# a list of several process operators with their arguments
+process:
+  - clean_email_mapper:
+  - clean_links_mapper:
+  - fix_unicode_mapper:
+  - punctuation_normalization_mapper:
+  - whitespace_normalization_mapper:
+
+  - alphanumeric_filter:  # 4068
+      tokenization: false
+      min_ratio: 0.7  # < 3sigma (0.773)
+      max_ratio: 0.881  # 3sigma
+  - average_line_length_filter:  # for code
+      max_len: 2100  # > 3sigma (1471) -- 7410
+  - character_repetition_filter:
+      rep_len: 10
+      max_ratio: 0.2  # > 3sigma (0.1458) -- 6060
+  - flagged_words_filter:
+      lang: en
+      tokenization: true
+      max_ratio: 0.00232  # 3sigma
+  - language_id_score_filter:  # remove language filter
+      min_score: 0.5
+  - maximum_line_length_filter:  # for code
+      max_len: 4000  # remove 8202 samples
+  - perplexity_filter:
+      lang: en
+      max_ppl: 4000  # remove 10284 samples
+  - special_characters_filter:
+      max_ratio: 0.38  # remove 5532 samples
+  - text_length_filter:
+      max_len: 4000  # > 3sigma -- 10873
+  - words_num_filter:
+      lang: en
+      tokenization: true
+      min_num: 20  # remove 10790 samples
+      max_num: 700  # remove 22709 samples
+  - word_repetition_filter:
+      lang: en
+      tokenization: true
+      rep_len: 10
+      max_ratio: 0.0887  # 3sigma
+
+  - document_simhash_deduplicator:
+      tokenization: space
+      window_size: 3  # small window size for short texts
+      lowercase: true
+      ignore_pattern: '\p{P}'
+      num_blocks: 10
+      hamming_distance: 8  # larger hamming distance threshold for short texts
+```