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Fixing dataset card

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- # Dataset Description
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-
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-
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- ## Dataset Summary
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- This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database.
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- It contains 2,935 HIV V3 loop protein sequences, which can interact with either CCR5 receptors on T-Cells or CXCR4 receptors on macrophages.
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-
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- Supported Tasks and Leaderboards: None
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- Languages: English
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-
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- ## Dataset Structure
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-
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- ### Data Instances
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- Data Instances: Each column represents the protein amino acid sequence of the HIV V3 loop.
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- The ID field indicates the Genbank reference ID for future cross-referencing.
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- There are 2,935 total V3 sequences, with 91% being CCR5 tropic and 23% CXCR4 tropic.
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- Data Fields: ID, sequence, fold, CCR5, CXCR4
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- Data Splits: None
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-
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- ## Dataset Creation
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-
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- Curation Rationale: This dataset was curated to train a model (HIV-BERT-V3) designed to predict whether an HIV V3 loop would be CCR5 or CXCR4 tropic.
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- Initial Data Collection and Normalization: Dataset was downloaded and curated on 12/20/2021.
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-
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- ## Considerations for Using the Data
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- Social Impact of Dataset: This dataset can be used to study the mechanism by which HIV V3 loops allow for entry into T-cells and macrophages.
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- Discussion of Biases: Due to the sampling nature of this database, it is predominantly composed of subtype B sequences from North America and Europe with only minor contributions of Subtype C, A, and D.
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- Currently, there was no effort made to balance the performance across these classes.
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- As such, one should consider refinement with additional sequences to perform well on non-B sequences.
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-
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- ## Additional Information:
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- - Dataset Curators: Will Dampier
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- - Citation Information: TBA
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-
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-
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- ---
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- license: mit
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- ---
 
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+ # Dataset Description
2
+
3
+
4
+ ## Dataset Summary
5
+
6
+ This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database.
7
+ It contains 2,935 HIV V3 loop protein sequences, which can interact with either CCR5 receptors on T-Cells or CXCR4 receptors on macrophages.
8
+
9
+ Supported Tasks and Leaderboards: None
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+
11
+ Languages: English
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+
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+ ## Dataset Structure
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+
15
+ ### Data Instances
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+ Data Instances: Each column represents the protein amino acid sequence of the HIV V3 loop.
17
+ The ID field indicates the Genbank reference ID for future cross-referencing.
18
+ There are 2,935 total V3 sequences, with 91% being CCR5 tropic and 23% CXCR4 tropic.
19
+ Data Fields: ID, sequence, fold, CCR5, CXCR4
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+ Data Splits: None
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+
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+ ## Dataset Creation
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+
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+ Curation Rationale: This dataset was curated to train a model (HIV-BERT-V3) designed to predict whether an HIV V3 loop would be CCR5 or CXCR4 tropic.
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+
26
+ Initial Data Collection and Normalization: Dataset was downloaded and curated on 12/20/2021.
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+
28
+ ## Considerations for Using the Data
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+
30
+ Social Impact of Dataset: This dataset can be used to study the mechanism by which HIV V3 loops allow for entry into T-cells and macrophages.
31
+
32
+ Discussion of Biases: Due to the sampling nature of this database, it is predominantly composed of subtype B sequences from North America and Europe with only minor contributions of Subtype C, A, and D.
33
+ Currently, there was no effort made to balance the performance across these classes.
34
+ As such, one should consider refinement with additional sequences to perform well on non-B sequences.
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+
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+ ## Additional Information:
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+ - Dataset Curators: Will Dampier
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+ - Citation Information: TBA
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+
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+
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+ ---
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+ license: mit
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+ ---