Hugging Face's logo

Datasets:
damlab
/
HIV_FLT

Modalities:
Text
Formats:
parquet
Size:
1K - 10K
Libraries:
Datasets
pandas
Dataset card Viewer Files Community
damlab commited on
Commit
a8e47c9
•
1 Parent(s): 1168251

Upload dataset_infos.json

Browse files
Files changed (1) hide show
  1. dataset_infos.json +1 -1
dataset_infos.json CHANGED
@@ -1 +1 @@
1
- {"damlab--HIV_FLT": {"description": "Dataset Summary\n---------------\nThis dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database. \nIt contains the most recent version (2016-Full-genome), composed of 1,609 high-quality full-length genomes. \nThe genes within these sequences were processed using the GeneCutter tool and translated into \ncorresponding amino acid sequences using the BioPython library Seq.translate function [ref]. \n\nSupported Tasks and Leaderboards: None\nLanguages: English \n\nDataset Structure\n-----------------\nData Instances: Each column represents the protein amino acid sequence of the HIV genome. \nThe ID field indicates the Genbank reference ID for future cross-referencing. \nThere are 1,609 full length HIV genomes. \nData Fields: ID, gag, pol, env, nef, tat, rev, proteome \nData Splits: none \n \nDataset Creation\n-----------------\nCuration Rationale: This dataset was curated to train a model (HIV-BERT) designed to predict a variety of sequence-dependent features regarding HIV. \nInitial Data Collection and Normalization: Dataset was downloaded and curated on 12/21/2021. \n\n \nConsiderations for Using the Data\n---------------------------------\nSocial Impact of Dataset: This dataset can be used to study sequence-dependent features of HIV, a virus that has claimed the lives of many individuals globally in the last few decades. \n\nDiscussion of Biases: This dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database full genome database and contains a representative sample from each subtype and geographic region. \n\nAdditional Information: \n\nDataset Curators: Will Dampier \n\nLicensing Information: N/A? \n\nCitation Information: \n", "citation": "@InProceedings{huggingface:dataset,\ntitle = {HIV Full Geneome Dataset},\nauthor={Will Dampier\n},\nyear={2021}\n}\n", "homepage": "", "license": "MIT", "features": {"id": {"dtype": "string", "id": null, "_type": "Value"}, "5LTR": {"dtype": "string", "id": null, "_type": "Value"}, "GagPol": {"dtype": "string", "id": null, "_type": "Value"}, "Vif": {"dtype": "string", "id": null, "_type": "Value"}, "Vpr": {"dtype": "string", "id": null, "_type": "Value"}, "Tat": {"dtype": "string", "id": null, "_type": "Value"}, "Rev": {"dtype": "string", "id": null, "_type": "Value"}, "Vpu": {"dtype": "string", "id": null, "_type": "Value"}, "Env": {"dtype": "string", "id": null, "_type": "Value"}, "Nef": {"dtype": "string", "id": null, "_type": "Value"}, "3LTR": {"dtype": "string", "id": null, "_type": "Value"}, "Genome": {"dtype": "string", "id": null, "_type": "Value"}}, "post_processed": null, "supervised_keys": null, "task_templates": null, "builder_name": null, "config_name": null, "version": null, "splits": {"train": {"name": "train", "num_bytes": 21741762, "num_examples": 1870, "dataset_name": "HIV_FLT"}}, "download_checksums": null, "download_size": 9499431, "post_processing_size": null, "dataset_size": 21741762, "size_in_bytes": 31241193}}
 
1
+ {"damlab--HIV_FLT": {"description": "Dataset Summary\n---------------\nThis dataset was derived from the Los Alamos National Laboratory HIV sequence (LANL) database. \nIt contains the most recent version (2016-Full-genome), composed of 1,609 high-quality full-length genomes. \nThe genes within these sequences were processed using the GeneCutter tool and translated into \ncorresponding amino acid sequences using the BioPython library Seq.translate function [ref]. \n\nDataset Structure\n-----------------\nData Instances: Each column represents the protein amino acid sequence of the HIV genome. \nThe ID field indicates the Genbank reference ID for future cross-referencing. \nThere are 1,609 full length HIV genomes. \nData Fields: ID, gag, pol, env, nef, tat, rev, proteome \nData Splits: none \n\nCitation Information: \n", "citation": "@InProceedings{huggingface:dataset,\ntitle = {HIV Full Geneome Dataset},\nauthor={Will Dampier\n},\nyear={2021}\n}\n", "homepage": "", "license": "MIT", "features": {"id": {"dtype": "string", "id": null, "_type": "Value"}, "5LTR": {"dtype": "string", "id": null, "_type": "Value"}, "GagPol": {"dtype": "string", "id": null, "_type": "Value"}, "Vif": {"dtype": "string", "id": null, "_type": "Value"}, "Vpr": {"dtype": "string", "id": null, "_type": "Value"}, "Tat": {"dtype": "string", "id": null, "_type": "Value"}, "Rev": {"dtype": "string", "id": null, "_type": "Value"}, "Vpu": {"dtype": "string", "id": null, "_type": "Value"}, "Env": {"dtype": "string", "id": null, "_type": "Value"}, "Nef": {"dtype": "string", "id": null, "_type": "Value"}, "3LTR": {"dtype": "string", "id": null, "_type": "Value"}, "Genome": {"dtype": "string", "id": null, "_type": "Value"}}, "post_processed": null, "supervised_keys": null, "task_templates": null, "builder_name": null, "config_name": null, "version": null, "splits": {"train": {"name": "train", "num_bytes": 21741762, "num_examples": 1870, "dataset_name": "HIV_FLT"}}, "download_checksums": null, "download_size": 9499431, "post_processing_size": null, "dataset_size": 21741762, "size_in_bytes": 31241193}}