Update README.md
Browse filesChange results for the best performing model of BiomedBERT-large
README.md
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- **Homepage:** https://huggingface.co/datasets/cnachteg/DUVEL/
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- **Repository:** https://github.com/cnachteg/DUVEL
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- **Paper:** TBA
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- **Point of Contact:**
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### Dataset Summary
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This dataset was created to identity oligogenic variant combinations, i.e. relation between several genes and their mutations, causing genetic diseases in scientific articles written in english. At the moment, it contains only digenic variant combinations, i.e. relations between two genes and at least two variants. The dataset is intended for binary relation extraction where the entities are masked within the text.
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The dataset can be used to train a model for ``text-classification`` (as the relation extraction task is here considered as a classification task). Success on this task is typically measured by achieving a high F1-score.
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The
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### Languages
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TBA
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```bib
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@article{
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author = {},
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title = {},
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journal = {},
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year = {
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}
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```
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- **Homepage:** https://huggingface.co/datasets/cnachteg/DUVEL/
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- **Repository:** https://github.com/cnachteg/DUVEL
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- **Paper:** TBA
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- **Point of Contact:** Charlotte Nachtegael - Charlotte.Nachtegael@ulb.be
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### Dataset Summary
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This dataset was created to identity oligogenic variant combinations, i.e. relation between several genes and their mutations, causing genetic diseases in scientific articles written in english. At the moment, it contains only digenic variant combinations, i.e. relations between two genes and at least two variants. The dataset is intended for binary relation extraction where the entities are masked within the text.
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The dataset can be used to train a model for ``text-classification`` (as the relation extraction task is here considered as a classification task). Success on this task is typically measured by achieving a high F1-score.
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The BiomedBERT-large (https://huggingface.co/microsoft/BiomedNLP-BiomedBERT-large-uncased-abstract) currently achieves the best performance with the following F1-score of 0.8371, with a precision of 0.8506 and a recall of 0.8239.
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### Languages
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TBA
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```bib
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@article{DUVEL_2024,
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author = {},
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title = {},
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journal = {},
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year = {2024}
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}
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```
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