Complex sentence: The minute structures, however, disappear, often completely, if the thermal alteration is very profound; thus small grains of quartz in a shale are lost or blend with the surrounding particles of clay, and the fine ground-mass of lavas is entirely reconstructed.
Split into simpler sentences: The minute structures, however, disappear, often completely, if the thermal alteration is very profound. Thus small grains of quartz in a shale are lost or blend with the surrounding particles of clay, and the fine ground-mass of lavas is entirely reconstructed.