Chris Oswald commited on
Commit
dd91a36
1 Parent(s): f2ef76c

changed resolution to reduce image loading time

Browse files
Files changed (1) hide show
  1. SPIDER.py +4 -2
SPIDER.py CHANGED
@@ -46,6 +46,8 @@ def standardize_3D_image(
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  image = np.transpose(image, axes=[1, 2, 0])
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  # Resize image
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  image = skimage.transform.resize(image, resize_shape)
 
 
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  return image
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@@ -163,8 +165,8 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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  "scan_type": datasets.Value("string"),
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  "image_path": datasets.Value("string"),
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  "mask_path": datasets.Value("string"),
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- "image_array": datasets.Array3D(shape=image_size, dtype='float64'),
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- "mask_array": datasets.Array3D(shape=image_size, dtype='float64'),
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  "metadata": {
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  "num_vertebrae": datasets.Value(dtype="string"), #TODO: more specific types
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  "num_discs": datasets.Value(dtype="string"),
 
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  image = np.transpose(image, axes=[1, 2, 0])
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  # Resize image
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  image = skimage.transform.resize(image, resize_shape)
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+ # Rescale to UInt8 type
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+ image = skimage.img_as_ubyte(image)
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  return image
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  "scan_type": datasets.Value("string"),
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  "image_path": datasets.Value("string"),
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  "mask_path": datasets.Value("string"),
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+ "image_array": datasets.Array3D(shape=image_size, dtype='uint8'),
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+ "mask_array": datasets.Array3D(shape=image_size, dtype='uint8'),
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  "metadata": {
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  "num_vertebrae": datasets.Value(dtype="string"), #TODO: more specific types
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  "num_discs": datasets.Value(dtype="string"),