update README.md
Browse files
README.md
CHANGED
@@ -9,7 +9,7 @@ tags:
|
|
9 |
- segmentation
|
10 |
---
|
11 |
|
12 |
-
#
|
13 |
|
14 |
The SPIDER dataset contains (human) lumbar spine magnetic resonance images (MRI) and segmentation masks described in the following paper:
|
15 |
|
@@ -28,6 +28,22 @@ Original data are available on [Zenodo](https://zenodo.org/records/8009680). Mor
|
|
28 |
<figcaption>Example MRI scan with segmentation masks</figcaption>
|
29 |
</figure>
|
30 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
31 |
## Getting Started
|
32 |
|
33 |
First, you will need to install the following dependencies:
|
@@ -46,10 +62,6 @@ dataset = load_dataset("cdoswald/SPIDER, name="default", trust_remote_code=True)
|
|
46 |
More detailed examples for [loading](tutorials/load_data.ipynb) the dataset with different configurations
|
47 |
and using the dataset for [segmentation tasks](tutorials/segment_anything.ipynb) are provided in the [tutorials](tutorials) folder.
|
48 |
|
49 |
-
## Table of Contents
|
50 |
-
|
51 |
-
(Placeholder--to be filled in at end of project)
|
52 |
-
|
53 |
## Dataset Description
|
54 |
|
55 |
- **Paper:** [Lumbar spine segmentation in MR images: a dataset and a public benchmark](https://www.nature.com/articles/s41597-024-03090-w)
|
@@ -66,7 +78,7 @@ In addition to MR images and segmentation masks, additional metadata (e.g., scan
|
|
66 |
patient characteristics (biological sex and age, when available), and radiological gradings indicating specific degenerative
|
67 |
changes can be loaded with the corresponding image data.
|
68 |
|
69 |
-
### Modifications
|
70 |
|
71 |
This version of the SPIDER dataset (i.e., available through the HuggingFace `datasets` library) differs from the original
|
72 |
data available on [Zenodo](https://zenodo.org/records/8009680) in two key ways:
|
|
|
9 |
- segmentation
|
10 |
---
|
11 |
|
12 |
+
# Spine Segmentation: Discs, Vertebrae and Spinal Canal (SPIDER)
|
13 |
|
14 |
The SPIDER dataset contains (human) lumbar spine magnetic resonance images (MRI) and segmentation masks described in the following paper:
|
15 |
|
|
|
28 |
<figcaption>Example MRI scan with segmentation masks</figcaption>
|
29 |
</figure>
|
30 |
|
31 |
+
## Table of Contents
|
32 |
+
|
33 |
+
1. [Getting Started](https://huggingface.co/datasets/cdoswald/SPIDER#getting-started)
|
34 |
+
2. [Dataset Description]()
|
35 |
+
a. [Dataset Summary](https://huggingface.co/datasets/cdoswald/SPIDER#dataset-summary)
|
36 |
+
b. [Data Modifications]()
|
37 |
+
3. [Dataset Structure]()
|
38 |
+
a. [Data Instances]()
|
39 |
+
b. [Data Format/Fields]()
|
40 |
+
c. [Data Splits]()
|
41 |
+
4. [Image Resolution]()
|
42 |
+
5. [Additional Information]()
|
43 |
+
a. [License]()
|
44 |
+
b. [Citation]()
|
45 |
+
c. [Disclaimer]()
|
46 |
+
|
47 |
## Getting Started
|
48 |
|
49 |
First, you will need to install the following dependencies:
|
|
|
62 |
More detailed examples for [loading](tutorials/load_data.ipynb) the dataset with different configurations
|
63 |
and using the dataset for [segmentation tasks](tutorials/segment_anything.ipynb) are provided in the [tutorials](tutorials) folder.
|
64 |
|
|
|
|
|
|
|
|
|
65 |
## Dataset Description
|
66 |
|
67 |
- **Paper:** [Lumbar spine segmentation in MR images: a dataset and a public benchmark](https://www.nature.com/articles/s41597-024-03090-w)
|
|
|
78 |
patient characteristics (biological sex and age, when available), and radiological gradings indicating specific degenerative
|
79 |
changes can be loaded with the corresponding image data.
|
80 |
|
81 |
+
### Data Modifications
|
82 |
|
83 |
This version of the SPIDER dataset (i.e., available through the HuggingFace `datasets` library) differs from the original
|
84 |
data available on [Zenodo](https://zenodo.org/records/8009680) in two key ways:
|