Chris Oswald
commited on
Commit
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4097551
1
Parent(s):
0281887
padded radiological gradings
Browse files
SPIDER.py
CHANGED
@@ -418,7 +418,14 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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]
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if patient_grades:
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grades_dict[str(patient_id)] = patient_grades
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-
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# Import image and mask data
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image_files = [
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file for file in os.listdir(os.path.join(paths_dict['images'], 'images'))
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@@ -496,7 +503,21 @@ class SPIDER(datasets.GeneratorBasedBuilder):
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if k not in ['Patient', 'IVD label']
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}
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patient_grades_dict[key] = value
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-
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# Prepare example return dict
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return_dict = {'patient_id':patient_id, 'scan_type':scan_type}
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# if raw_image:
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]
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if patient_grades:
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grades_dict[str(patient_id)] = patient_grades
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+
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# Determine maximum number of radiological gradings per patient
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max_ivd = 0
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for temp_dict_1 in grades_dict.values():
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for temp_dict_2 in temp_dict_1:
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if int(temp_dict_2['IVD label']) > max_ivd:
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max_ivd = int(temp_dict_2['IVD label'])
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# Import image and mask data
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image_files = [
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file for file in os.listdir(os.path.join(paths_dict['images'], 'images'))
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if k not in ['Patient', 'IVD label']
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}
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patient_grades_dict[key] = value
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# Pad patient radiological gradings so that data for all patients
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# have the same dimensions
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for i in range(len(patient_grades_dict) + 1, max_ivd + 1):
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patient_grades_dict[f'IVD{i}'] = {
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"Modic": "",
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"UP endplate": "",
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"LOW endplate": "",
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"Spondylolisthesis": "",
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"Disc herniation": "",
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"Disc narrowing": "",
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"Disc bulging": "",
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"Pfirrman grade": "",
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}
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# Prepare example return dict
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return_dict = {'patient_id':patient_id, 'scan_type':scan_type}
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# if raw_image:
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