keeganskeate commited on
Commit
33c4691
·
1 Parent(s): 50d5382

- Loading script + docs fixed for Raw Garden details (4827186a74357e29ac88c653ca6d601a5cf01543)

Files changed (2) hide show
  1. README.md +33 -15
  2. cannabis_tests.py +198 -269
README.md CHANGED
@@ -42,13 +42,13 @@ tags:
42
 
43
  ## Dataset Description
44
 
45
- - **Homepage:** <https://cannlytics.com>
46
  - **Repository:** <https://huggingface.co/datasets/cannlytics/cannabis_tests>
47
  - **Point of Contact:** <dev@cannlytics.com>
48
 
49
  ### Dataset Summary
50
 
51
- This dataset is a collection of public cannabis lab test results parsed by CoADoc, a certificate of analysis (COA) parsing tool.
52
 
53
  ## Dataset Structure
54
 
@@ -63,24 +63,20 @@ The dataset is partitioned into the various sources of lab results.
63
 
64
  ### Data Instances
65
 
66
- You can load `details`, `results`, and `values` for each of the dataset files. For example:
67
 
68
  ```py
69
  from datasets import load_dataset
70
 
71
- # Specify the Cannabis Tests dataset.
72
- dataset = 'cannlytics/cannabis_tests'
73
-
74
- # Load Raw Garden lab test details.
75
- rawgarden_details = load_dataset(dataset, 'rawgarden_details')
76
-
77
- # Load Raw Garden lab test results.
78
- rawgarden_results = load_dataset(dataset, 'rawgarden_results')
79
-
80
- # Load Raw Garden lab test values.
81
- rawgarden_values = load_dataset(dataset, 'rawgarden_values')
82
  ```
83
 
 
 
84
  ### Data Fields
85
 
86
  Below is a non-exhaustive list of fields, used to standardize the various data that are encountered, that you may expect encounter in the parsed COA data.
@@ -147,7 +143,29 @@ Each result can contain the following fields.
147
 
148
  ### Data Splits
149
 
150
- The data is split into training, validation, and test data. Training data is used for training your models. Validation data is used for evaluating your trained models, to help you determine a final model. Test data is used to evaluate your final model.
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
151
 
152
  ## Dataset Creation
153
 
 
42
 
43
  ## Dataset Description
44
 
45
+ - **Homepage:** <https://github.com/cannlytics/cannlytics>
46
  - **Repository:** <https://huggingface.co/datasets/cannlytics/cannabis_tests>
47
  - **Point of Contact:** <dev@cannlytics.com>
48
 
49
  ### Dataset Summary
50
 
51
+ This dataset is a collection of public cannabis lab test results parsed by `CoADoc`, a certificate of analysis (COA) parsing tool.
52
 
53
  ## Dataset Structure
54
 
 
63
 
64
  ### Data Instances
65
 
66
+ You can load the `details` for each of the dataset files. For example:
67
 
68
  ```py
69
  from datasets import load_dataset
70
 
71
+ # Download Raw Garden lab result details.
72
+ dataset = load_dataset('cannlytics/cannabis_tests', 'rawgarden')
73
+ details = dataset['details']
74
+ assert len(details) > 0
75
+ print('Downloaded %i observations.' % len(details))
 
 
 
 
 
 
76
  ```
77
 
78
+ > Note: Configurations for `results` and `values` are planned. For now, you can create these data with `CoADoc().save(details, out_file)`.
79
+
80
  ### Data Fields
81
 
82
  Below is a non-exhaustive list of fields, used to standardize the various data that are encountered, that you may expect encounter in the parsed COA data.
 
143
 
144
  ### Data Splits
145
 
146
+ The data is split into `details`, `results`, and `values` data. Configurations for `results` and `values` are planned. For now, you can create these data with:
147
+
148
+ ```py
149
+ from cannlytics.data.coas import CoADoc
150
+ from datasets import load_dataset
151
+
152
+ # Download Raw Garden lab result details.
153
+ dataset = load_dataset('cannlytics/cannabis_tests', 'rawgarden')
154
+ details = dataset['details']
155
+
156
+ # Save the data locally with "Details", "Results", and "Values" worksheets.
157
+ outfile = 'details.xlsx'
158
+ parser = CoADoc()
159
+ parser.save(details, outfile)
160
+
161
+ # Read the values.
162
+ values = pd.read_excel(outfile, sheet_name='Values')
163
+
164
+ # Read the results.
165
+ results = pd.read_excel(outfile, sheet_name='Results')
166
+ ```
167
+
168
+ <!-- Training data is used for training your models. Validation data is used for evaluating your trained models, to help you determine a final model. Test data is used to evaluate your final model. -->
169
 
170
  ## Dataset Creation
171
 
cannabis_tests.py CHANGED
@@ -6,14 +6,23 @@ Authors:
6
  Keegan Skeate <https://github.com/keeganskeate>
7
  Candace O'Sullivan-Sutherland <https://github.com/candy-o>
8
  Created: 9/10/2022
9
- Updated: 9/13/2022
10
  License: <https://github.com/cannlytics/cannlytics/blob/main/LICENSE>
11
  """
12
- import datasets # pip install datasets
13
- # from datasets import Sequence, datasets.Value
14
 
15
- # Citation for using the dataset.
16
- CANNABIS_TESTS_CITATION = """\
 
 
 
 
 
 
 
 
 
17
  @inproceedings{cannlytics2022cannabis_tests,
18
  author = {Skeate, Keegan and O'Sullivan-Sutherland, Candace},
19
  title = {Cannabis Tests: Curated Cannabis Lab Test Results},
@@ -24,178 +33,144 @@ CANNABIS_TESTS_CITATION = """\
24
  publisher = {Cannlytics}
25
  }
26
  """
27
- CANNABIS_TESTS_DESCRIPTION = """\
28
- Cannabis lab test results (https://cannlytics.com/data/tests) is a
29
- dataset of curated cannabis lab test results.
30
- """
31
- CANNABIS_TESTS_URL = 'https://huggingface.co/datasets/cannlytics/cannabis_tests'
32
 
33
  # Raw Garden constants.
34
- # RAWGARDEN_DATA_URL = 'https://cannlytics.page.link/rawgarden'
35
- RAWGARDEN_DETAILS_URL = 'https://firebasestorage.googleapis.com/v0/b/cannlytics.appspot.com/o/data%2Flab_results%2Frawgarden%2Fdetails.csv?alt=media&token=e5b5273a-049a-4092-98d7-90a62ef399a3'
36
- RAWGARDEN_RESULTS_URL = 'https://cannlytics.page.link/rawgarden-results'
37
- RAWGARDEN_VALUES_URL = 'https://cannlytics.page.link/rawgarden-values'
38
  RAWGARDEN_URL = 'https://github.com/cannlytics/cannlytics/tree/main/ai/curation/get_rawgarden_data'
 
 
 
 
 
 
39
  RAWGARDEN_DESCRIPTION = """\
40
  Raw Garden lab test results (https://cannlytics.com/data/tests) is a
41
  dataset of curated cannabis lab test results from Raw Garden, a large
42
  cannabis processor in California.
43
  """
44
- # RAWGARDEN_RESULTS = {
45
- # 'sample_hash': datasets.Value(dtype='string', id=None),
46
- # 'results_hash': datasets.Value(dtype='string', id=None),
47
- # 'sample_id': datasets.Value(dtype='string', id=None),
48
- # 'product_name': datasets.Value(dtype='string', id=None),
49
- # 'producer': datasets.Value(dtype='string', id=None),
50
- # 'product_type': datasets.Value(dtype='string', id=None),
51
- # 'product_subtype': datasets.Value(dtype='string', id=None),
52
- # 'date_tested': datasets.Value(dtype='string', id=None),
53
- # 'analysis': datasets.Value(dtype='string', id=None),
54
- # 'key': datasets.Value(dtype='string', id=None),
55
- # 'limit': datasets.Value(dtype='double', id=None),
56
- # 'lod': datasets.Value(dtype='double', id=None),
57
- # 'lodloq': datasets.Value(dtype='double', id=None),
58
- # 'loq': datasets.Value(dtype='double', id=None),
59
- # 'margin_of_error': datasets.Value(dtype='double', id=None),
60
- # 'mg_g': datasets.Value(dtype='double', id=None),
61
- # 'name': datasets.Value(dtype='string', id=None),
62
- # 'status': datasets.Value(dtype='string', id=None),
63
- # 'units': datasets.Value(dtype='string', id=None),
64
- # 'value': datasets.Value(dtype='double', id=None),
65
- # }
66
  RAWGARDEN_DETAILS = datasets.Features({
67
- 'sample_hash': datasets.Value(dtype='string', id=None),
68
- 'results_hash': datasets.Value(dtype='string', id=None),
69
- 'sample_id': datasets.Value(dtype='string', id=None),
70
- 'product_name': datasets.Value(dtype='string', id=None),
71
- 'producer': datasets.Value(dtype='string', id=None),
72
- 'product_type': datasets.Value(dtype='string', id=None),
73
- 'product_subtype': datasets.Value(dtype='string', id=None),
74
- 'date_tested': datasets.Value(dtype='string', id=None),
75
- 'analyses': datasets.Value(dtype='string', id=None),
76
- 'batch_number': datasets.Value(dtype='string', id=None),
77
- 'batch_size': datasets.Value(dtype='string', id=None),
78
- 'batch_units': datasets.Value(dtype='string', id=None),
79
- 'cannabinoids_method': datasets.Value(dtype='string', id=None),
80
- 'cannabinoids_status': datasets.Value(dtype='string', id=None),
81
- 'coa_algorithm': datasets.Value(dtype='string', id=None),
82
- 'coa_algorithm_entry_point': datasets.Value(dtype='string', id=None),
83
- 'coa_parsed_at': datasets.Value(dtype='string', id=None),
84
- 'coa_pdf': datasets.Value(dtype='string', id=None),
85
- 'coa_urls': datasets.Value(dtype='string', id=None),
86
- 'date_collected': datasets.Value(dtype='string', id=None),
87
- 'date_produced': datasets.Value(dtype='string', id=None),
88
- 'date_received': datasets.Value(dtype='string', id=None),
89
- 'date_retail': datasets.Value(dtype='string', id=None),
90
- 'delta_9_thc_per_unit': datasets.Value(dtype='string', id=None),
91
- 'distributor': datasets.Value(dtype='string', id=None),
92
- 'distributor_address': datasets.Value(dtype='string', id=None),
93
- 'distributor_city': datasets.Value(dtype='string', id=None),
94
- 'distributor_license_number': datasets.Value(dtype='string', id=None),
95
- 'distributor_state': datasets.Value(dtype='string', id=None),
96
- 'distributor_street': datasets.Value(dtype='string', id=None),
97
- 'distributor_zipcode': datasets.Value(dtype='float64', id=None),
98
- 'foreign_matter_method': datasets.Value(dtype='string', id=None),
99
- 'foreign_matter_status': datasets.Value(dtype='string', id=None),
100
- 'heavy_metals_method': datasets.Value(dtype='string', id=None),
101
- 'heavy_metals_status': datasets.Value(dtype='string', id=None),
102
- 'images': datasets.Value(dtype='string', id=None),
103
- 'lab': datasets.Value(dtype='string', id=None),
104
- 'lab_address': datasets.Value(dtype='string', id=None),
105
- 'lab_city': datasets.Value(dtype='string', id=None),
106
- 'lab_county': datasets.Value(dtype='string', id=None),
107
- 'lab_email': datasets.Value(dtype='string', id=None),
108
- 'lab_id': datasets.Value(dtype='string', id=None),
109
- 'lab_image_url': datasets.Value(dtype='string', id=None),
110
- 'lab_latitude': datasets.Value(dtype='float64', id=None),
111
- 'lab_license_number': datasets.Value(dtype='string', id=None),
112
- 'lab_longitude': datasets.Value(dtype='float64', id=None),
113
- 'lab_phone': datasets.Value(dtype='string', id=None),
114
- 'lab_results_url': datasets.Value(dtype='string', id=None),
115
- 'lab_state': datasets.Value(dtype='string', id=None),
116
- 'lab_street': datasets.Value(dtype='string', id=None),
117
- 'lab_website': datasets.Value(dtype='string', id=None),
118
- 'lab_zipcode': datasets.Value(dtype='int64', id=None),
119
- 'lims': datasets.Value(dtype='string', id=None),
120
- 'metrc_ids': datasets.Value(dtype='string', id=None),
121
- 'metrc_lab_id': datasets.Value(dtype='string', id=None),
122
- 'metrc_source_id': datasets.Value(dtype='string', id=None),
123
- 'microbes_method': datasets.Value(dtype='string', id=None),
124
- 'microbes_status': datasets.Value(dtype='string', id=None),
125
- 'moisture_content': datasets.Value(dtype='string', id=None),
126
- 'moisture_method': datasets.Value(dtype='string', id=None),
127
- 'mycotoxins_method': datasets.Value(dtype='string', id=None),
128
- 'mycotoxins_status': datasets.Value(dtype='string', id=None),
129
- 'notes': datasets.Value(dtype='string', id=None),
130
- 'pesticides_method': datasets.Value(dtype='string', id=None),
131
- 'pesticides_status': datasets.Value(dtype='string', id=None),
132
- 'producer_address': datasets.Value(dtype='string', id=None),
133
- 'producer_city': datasets.Value(dtype='string', id=None),
134
- 'producer_image_url': datasets.Value(dtype='string', id=None),
135
- 'producer_license_number': datasets.Value(dtype='string', id=None),
136
- 'producer_state': datasets.Value(dtype='string', id=None),
137
- 'producer_street': datasets.Value(dtype='string', id=None),
138
- 'producer_url': datasets.Value(dtype='string', id=None),
139
- 'producer_zipcode': datasets.Value(dtype='float64', id=None),
140
- 'product_size': datasets.Value(dtype='string', id=None),
141
- 'public': datasets.Value(dtype='float64', id=None),
142
- 'residual_solvents_method': datasets.Value(dtype='string', id=None),
143
- 'residual_solvents_status': datasets.Value(dtype='string', id=None),
144
- 'results': datasets.Value(dtype='string', id=None),
145
- 'sample_number': datasets.Value(dtype='float64', id=None),
146
- 'sample_size': datasets.Value(dtype='string', id=None),
147
- 'sampling_method': datasets.Value(dtype='string', id=None),
148
- 'serving_size': datasets.Value(dtype='string', id=None),
149
- 'status': datasets.Value(dtype='string', id=None),
150
- 'sum_of_cannabinoids': datasets.Value(dtype='float64', id=None),
151
- 'terpenes_method': datasets.Value(dtype='string', id=None),
152
- 'terpenes_status': datasets.Value(dtype='string', id=None),
153
- 'total_cannabinoids': datasets.Value(dtype='float64', id=None),
154
- 'total_cbc': datasets.Value(dtype='float64', id=None),
155
- 'total_cbd': datasets.Value(dtype='float64', id=None),
156
- 'total_cbdv': datasets.Value(dtype='float64', id=None),
157
- 'total_cbg': datasets.Value(dtype='float64', id=None),
158
- 'total_terpenes': datasets.Value(dtype='float64', id=None),
159
- 'total_terpenes_mg_g': datasets.Value(dtype='float64', id=None),
160
- 'total_thc': datasets.Value(dtype='float64', id=None),
161
- 'total_thcv': datasets.Value(dtype='float64', id=None),
162
- 'url': datasets.Value(dtype='string', id=None),
163
- 'water_activity_method': datasets.Value(dtype='string', id=None),
164
- 'water_activity_status': datasets.Value(dtype='string', id=None)
165
  })
166
- # RAWGARDEN_VALUES = {
167
- # 'delta_9_thc': datasets.Value(dtype='float64', id=None),
168
- # }
169
-
170
- # MCR Labs constants.
171
- MCRLABS_DATA_URL = 'https://cannlytics.page.link/mcrlabs'
172
- MCRLABS_URL = 'https://github.com/cannlytics/cannlytics/tree/main/ai/curation/get_mcr_labs_data'
173
- MCRLABS_DESCRIPTION = """\
174
- MCR Labs lab test results (https://cannlytics.com/data/tests) is a
175
- dataset of curated cannabis lab test results from MCR Labs, a lab that
176
- tests cannabis in Massachusetts.
177
- """
178
- MCRLABS_FEATURES = []
179
-
180
- # PSI Labs constants.
181
- PSILABS_DATA_URL = 'https://cannlytics.page.link/psilabs'
182
- PSILABS_URL = 'https://github.com/cannlytics/cannlytics/tree/main/ai/curation/get_psi_labs_data'
183
- PSILABS_DESCRIPTION = """\
184
- PSI Labs lab test results (https://cannlytics.com/data/tests) is a
185
- dataset of curated cannabis lab test results from PSI Labs, a lab that
186
- tests cannabis in Michigan.
187
- """
188
- PSILABS_FEATURES = []
189
-
190
- # SC Labs constants.
191
- SCLABS_DATA_URL = 'https://cannlytics.page.link/sclabs'
192
- SCLABS_URL = 'https://github.com/cannlytics/cannlytics/tree/main/ai/curation/get_sc_labs_data'
193
- SCLABS_DESCRIPTION = """\
194
- SC Labs lab test results (https://cannlytics.com/data/tests) is a
195
- dataset of curated cannabis lab test results from SC Labs, a lab that
196
- tests cannabis in California.
197
- """
198
- SCLABS_FEATURES = []
199
 
200
 
201
  class CannabisTestsConfig(datasets.BuilderConfig):
@@ -203,130 +178,84 @@ class CannabisTestsConfig(datasets.BuilderConfig):
203
 
204
  def __init__(
205
  self,
 
 
206
  features,
207
- data_url,
208
- citation,
209
- url,
210
- label_classes=('False', 'True'),
211
  **kwargs
212
  ):
213
  """BuilderConfig for Cannabis Tests.
214
  Args:
215
- features (list[str]): A list of the features that will appear in
216
- the feature dict. Should not include "label".
217
- data_url (str): A URL to download the zip file from.
218
- citation (str): A citation for the data set.
219
- url (str): A URL for information about the data set.
220
- label_classes (list[str]): The list of classes for the label if
221
- the label is present as a string. Non-string labels will be
222
- cast to either 'False' or 'True'.
223
- **kwargs: Keyword arguments forwarded to super.
224
  """
225
- super(CannabisTestsConfig, self).__init__(version=datasets.Version("1.0.2"), **kwargs)
226
  self.features = features
227
- self.label_classes = label_classes
228
- self.data_url = data_url
229
- self.citation = citation
230
- self.url = url
231
-
232
 
233
  class CannabisTests(datasets.GeneratorBasedBuilder):
234
  """The Cannabis Tests dataset."""
235
 
236
- VERSION = datasets.Version('1.0.0')
237
-
 
238
  BUILDER_CONFIGS = [
239
  CannabisTestsConfig(
240
- name='rawgarden_details',
241
  description=RAWGARDEN_DESCRIPTION,
242
  features=RAWGARDEN_DETAILS,
243
- data_url=RAWGARDEN_DETAILS_URL,
244
- citation=CANNABIS_TESTS_CITATION,
245
- url=RAWGARDEN_URL,
246
  ),
247
- # CannabisTestsConfig(
248
- # name='rawgarden_results',
249
- # description=RAWGARDEN_DESCRIPTION,
250
- # features=RAWGARDEN_RESULTS,
251
- # data_url=RAWGARDEN_RESULTS_URL,
252
- # citation=CANNABIS_TESTS_CITATION,
253
- # url=RAWGARDEN_URL,
254
- # ),
255
- # CannabisTestsConfig(
256
- # name='rawgarden_values',
257
- # description=RAWGARDEN_DESCRIPTION,
258
- # features=RAWGARDEN_VALUES,
259
- # data_url=RAWGARDEN_VALUES_URL,
260
- # citation=CANNABIS_TESTS_CITATION,
261
- # url=RAWGARDEN_URL,
262
- # ),
263
- # CannabisTestsConfig(
264
- # name='mcrlabs',
265
- # description=MCRLABS_DESCRIPTION,
266
- # features=MCRLABS_FEATURES,
267
- # data_url=MCRLABS_DATA_URL,
268
- # citation=CANNABIS_TESTS_CITATION,
269
- # url=MCRLABS_URL,
270
- # ),
271
- # CannabisTestsConfig(
272
- # name='psilabs',
273
- # description=PSILABS_DESCRIPTION,
274
- # features=PSILABS_FEATURES,
275
- # data_url=PSILABS_DATA_URL,
276
- # citation=CANNABIS_TESTS_CITATION,
277
- # url=PSILABS_URL,
278
- # ),
279
- # CannabisTestsConfig(
280
- # name='sclabs',
281
- # description=SCLABS_DESCRIPTION,
282
- # features=SCLABS_FEATURES,
283
- # data_url=SCLABS_DATA_URL,
284
- # citation=CANNABIS_TESTS_CITATION,
285
- # url=SCLABS_URL,
286
- # ),
287
  ]
288
 
289
- DEFAULT_CONFIG_NAME = 'rawgarden_details'
290
-
291
  def _info(self):
292
- # features = {feature: datasets.datasets.Value('string') for feature in self.config.features}
293
-
294
- # TODO: Define all numeric features.
295
- # features['span1_index'] = datasets.datasets.Value('int32')
296
-
297
- # TODO: Define all image features.
298
-
299
- # TODO: Define all sequence features.
300
- # features["answers"] = datasets.features.Sequence(
301
- # {"text": datasets.datasets.Value("string"), "answer_start": datasets.datasets.Value("int32"),}
302
- # )
303
-
304
  return datasets.DatasetInfo(
305
- citation=CANNABIS_TESTS_CITATION,
306
- description=CANNABIS_TESTS_DESCRIPTION,
307
- features=RAWGARDEN_DETAILS,
308
- homepage=CANNABIS_TESTS_URL,
309
  supervised_keys=None,
310
- license='CC-BY-4.0',
311
- version='1.0.0',
312
- )
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
313
 
314
- # def _generate_examples(self, filepath):
315
- # """This function returns the examples in raw (text) form."""
316
- # with open(filepath, encoding='utf-8') as f:
317
- # for line in f:
318
- # row = json.loads(line)
319
- # product_name = row.get('product_name', '').strip()
320
- # for i, result in enumerate(row['results']):
321
- # _id = str(i)
322
- # yield _id, {
323
- # 'product_name': product_name,
324
- # 'analyte': result.get('key', ''),
325
- # 'value': result.get('value', 0),
326
- # }
327
 
 
328
 
329
- # if __name__ == '__main__':
330
 
331
- # from datasets import load_dataset
332
- # dataset = load_dataset('cannabis_tests.py')
 
 
 
 
6
  Keegan Skeate <https://github.com/keeganskeate>
7
  Candace O'Sullivan-Sutherland <https://github.com/candy-o>
8
  Created: 9/10/2022
9
+ Updated: 9/14/2022
10
  License: <https://github.com/cannlytics/cannlytics/blob/main/LICENSE>
11
  """
12
+ import datasets
13
+ import pandas as pd
14
 
15
+
16
+ # === Constants. ===
17
+
18
+ _VERSION = '1.0.1'
19
+ _HOMEPAGE = 'https://huggingface.co/datasets/cannlytics/cannabis_tests'
20
+ _LICENSE = "https://opendatacommons.org/licenses/by/4-0/"
21
+ _DESCRIPTION = """\
22
+ Cannabis lab test results (https://cannlytics.com/data/tests) is a
23
+ dataset of curated cannabis lab test results.
24
+ """
25
+ _CITATION = """\
26
  @inproceedings{cannlytics2022cannabis_tests,
27
  author = {Skeate, Keegan and O'Sullivan-Sutherland, Candace},
28
  title = {Cannabis Tests: Curated Cannabis Lab Test Results},
 
33
  publisher = {Cannlytics}
34
  }
35
  """
 
 
 
 
 
36
 
37
  # Raw Garden constants.
 
 
 
 
38
  RAWGARDEN_URL = 'https://github.com/cannlytics/cannlytics/tree/main/ai/curation/get_rawgarden_data'
39
+ RAWGARDEN_DATA_URLS = {
40
+ 'rawgarden': 'https://cannlytics.page.link/?link=https://firebasestorage.googleapis.com/v0/b/cannlytics.appspot.com/o/data%252Flab_results%252Frawgarden%252Fdetails.csv?alt%3Dmedia%26token%3De5b5273a-049a-4092-98d7-90a62ef399a3',
41
+ # 'rawgarden_details': 'https://cannlytics.page.link/?link=https://firebasestorage.googleapis.com/v0/b/cannlytics.appspot.com/o/data%252Flab_results%252Frawgarden%252Fdetails.csv?alt%3Dmedia%26token%3De5b5273a-049a-4092-98d7-90a62ef399a3',
42
+ # 'rawgarden_results': 'https://cannlytics.page.link/?link=https://firebasestorage.googleapis.com/v0/b/cannlytics.appspot.com/o/data%252Flab_results%252Frawgarden%252Fresults.csv?alt%3Dmedia%26token%3Ddd868e72-edde-4278-9725-b33368a35d54',
43
+ # 'rawgarden_values': 'https://cannlytics.page.link/?link=https://firebasestorage.googleapis.com/v0/b/cannlytics.appspot.com/o/data%252Flab_results%252Frawgarden%252Fvalues.csv?alt%3Dmedia%26token%3D5d427468-c33e-4e45-ae40-efd10fdca644',
44
+ }
45
  RAWGARDEN_DESCRIPTION = """\
46
  Raw Garden lab test results (https://cannlytics.com/data/tests) is a
47
  dataset of curated cannabis lab test results from Raw Garden, a large
48
  cannabis processor in California.
49
  """
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
50
  RAWGARDEN_DETAILS = datasets.Features({
51
+ 'sample_hash': datasets.Value(dtype='string'),
52
+ 'results_hash': datasets.Value(dtype='string'),
53
+ 'sample_id': datasets.Value(dtype='string'),
54
+ 'product_name': datasets.Value(dtype='string'),
55
+ 'producer': datasets.Value(dtype='string'),
56
+ 'product_type': datasets.Value(dtype='string'),
57
+ 'product_subtype': datasets.Value(dtype='string'),
58
+ 'date_tested': datasets.Value(dtype='string'),
59
+ 'analyses': datasets.Value(dtype='string'),
60
+ 'batch_number': datasets.Value(dtype='string'),
61
+ 'batch_size': datasets.Value(dtype='string'),
62
+ 'batch_units': datasets.Value(dtype='string'),
63
+ 'cannabinoids_method': datasets.Value(dtype='string'),
64
+ 'cannabinoids_status': datasets.Value(dtype='string'),
65
+ 'coa_algorithm': datasets.Value(dtype='string'),
66
+ 'coa_algorithm_entry_point': datasets.Value(dtype='string'),
67
+ 'coa_parsed_at': datasets.Value(dtype='string'),
68
+ 'coa_pdf': datasets.Value(dtype='string'),
69
+ 'coa_urls': datasets.Value(dtype='string'),
70
+ 'date_collected': datasets.Value(dtype='string'),
71
+ 'date_produced': datasets.Value(dtype='string'),
72
+ 'date_received': datasets.Value(dtype='string'),
73
+ 'date_retail': datasets.Value(dtype='string'),
74
+ 'delta_9_thc_per_unit': datasets.Value(dtype='string'),
75
+ 'distributor': datasets.Value(dtype='string'),
76
+ 'distributor_address': datasets.Value(dtype='string'),
77
+ 'distributor_city': datasets.Value(dtype='string'),
78
+ 'distributor_license_number': datasets.Value(dtype='string'),
79
+ 'distributor_state': datasets.Value(dtype='string'),
80
+ 'distributor_street': datasets.Value(dtype='string'),
81
+ 'distributor_zipcode': datasets.Value(dtype='float64'),
82
+ 'foreign_matter_method': datasets.Value(dtype='string'),
83
+ 'foreign_matter_status': datasets.Value(dtype='string'),
84
+ 'heavy_metals_method': datasets.Value(dtype='string'),
85
+ 'heavy_metals_status': datasets.Value(dtype='string'),
86
+ 'images': datasets.Value(dtype='string'),
87
+ 'lab': datasets.Value(dtype='string'),
88
+ 'lab_address': datasets.Value(dtype='string'),
89
+ 'lab_city': datasets.Value(dtype='string'),
90
+ 'lab_county': datasets.Value(dtype='string'),
91
+ 'lab_email': datasets.Value(dtype='string'),
92
+ 'lab_id': datasets.Value(dtype='string'),
93
+ 'lab_image_url': datasets.Value(dtype='string'),
94
+ 'lab_latitude': datasets.Value(dtype='float64'),
95
+ 'lab_license_number': datasets.Value(dtype='string'),
96
+ 'lab_longitude': datasets.Value(dtype='float64'),
97
+ 'lab_phone': datasets.Value(dtype='string'),
98
+ 'lab_results_url': datasets.Value(dtype='string'),
99
+ 'lab_state': datasets.Value(dtype='string'),
100
+ 'lab_street': datasets.Value(dtype='string'),
101
+ 'lab_website': datasets.Value(dtype='string'),
102
+ 'lab_zipcode': datasets.Value(dtype='int64'),
103
+ 'lims': datasets.Value(dtype='string'),
104
+ 'metrc_ids': datasets.Value(dtype='string'),
105
+ 'metrc_lab_id': datasets.Value(dtype='string'),
106
+ 'metrc_source_id': datasets.Value(dtype='string'),
107
+ 'microbes_method': datasets.Value(dtype='string'),
108
+ 'microbes_status': datasets.Value(dtype='string'),
109
+ 'moisture_content': datasets.Value(dtype='string'),
110
+ 'moisture_method': datasets.Value(dtype='string'),
111
+ 'mycotoxins_method': datasets.Value(dtype='string'),
112
+ 'mycotoxins_status': datasets.Value(dtype='string'),
113
+ 'notes': datasets.Value(dtype='string'),
114
+ 'pesticides_method': datasets.Value(dtype='string'),
115
+ 'pesticides_status': datasets.Value(dtype='string'),
116
+ 'producer_address': datasets.Value(dtype='string'),
117
+ 'producer_city': datasets.Value(dtype='string'),
118
+ 'producer_image_url': datasets.Value(dtype='string'),
119
+ 'producer_license_number': datasets.Value(dtype='string'),
120
+ 'producer_state': datasets.Value(dtype='string'),
121
+ 'producer_street': datasets.Value(dtype='string'),
122
+ 'producer_url': datasets.Value(dtype='string'),
123
+ 'producer_zipcode': datasets.Value(dtype='float64'),
124
+ 'product_size': datasets.Value(dtype='string'),
125
+ 'public': datasets.Value(dtype='float64'),
126
+ 'residual_solvents_method': datasets.Value(dtype='string'),
127
+ 'residual_solvents_status': datasets.Value(dtype='string'),
128
+ 'results': datasets.Value(dtype='string'),
129
+ 'sample_number': datasets.Value(dtype='float64'),
130
+ 'sample_size': datasets.Value(dtype='string'),
131
+ 'sampling_method': datasets.Value(dtype='string'),
132
+ 'serving_size': datasets.Value(dtype='string'),
133
+ 'status': datasets.Value(dtype='string'),
134
+ 'sum_of_cannabinoids': datasets.Value(dtype='float64'),
135
+ 'terpenes_method': datasets.Value(dtype='string'),
136
+ 'terpenes_status': datasets.Value(dtype='string'),
137
+ 'total_cannabinoids': datasets.Value(dtype='float64'),
138
+ 'total_cbc': datasets.Value(dtype='float64'),
139
+ 'total_cbd': datasets.Value(dtype='float64'),
140
+ 'total_cbdv': datasets.Value(dtype='float64'),
141
+ 'total_cbg': datasets.Value(dtype='float64'),
142
+ 'total_terpenes': datasets.Value(dtype='float64'),
143
+ 'total_terpenes_mg_g': datasets.Value(dtype='float64'),
144
+ 'total_thc': datasets.Value(dtype='float64'),
145
+ 'total_thcv': datasets.Value(dtype='float64'),
146
+ 'url': datasets.Value(dtype='string'),
147
+ 'water_activity_method': datasets.Value(dtype='string'),
148
+ 'water_activity_status': datasets.Value(dtype='string')
149
  })
150
+ # RAWGARDEN_RESULTS = datasets.Features({
151
+ # 'sample_hash': datasets.Value(dtype='string'),
152
+ # 'results_hash': datasets.Value(dtype='string'),
153
+ # 'sample_id': datasets.Value(dtype='string'),
154
+ # 'product_name': datasets.Value(dtype='string'),
155
+ # 'producer': datasets.Value(dtype='string'),
156
+ # 'product_type': datasets.Value(dtype='string'),
157
+ # 'product_subtype': datasets.Value(dtype='string'),
158
+ # 'date_tested': datasets.Value(dtype='string'),
159
+ # 'analysis': datasets.Value(dtype='string'),
160
+ # 'key': datasets.Value(dtype='string'),
161
+ # 'limit': datasets.Value(dtype='double'),
162
+ # 'lod': datasets.Value(dtype='double'),
163
+ # 'lodloq': datasets.Value(dtype='double'),
164
+ # 'loq': datasets.Value(dtype='double'),
165
+ # 'margin_of_error': datasets.Value(dtype='double'),
166
+ # 'mg_g': datasets.Value(dtype='double'),
167
+ # 'name': datasets.Value(dtype='string'),
168
+ # 'status': datasets.Value(dtype='string'),
169
+ # 'units': datasets.Value(dtype='string'),
170
+ # 'value': datasets.Value(dtype='double'),
171
+ # })
172
+ # TODO: Determine standard values?
173
+ # RAWGARDEN_VALUES = datasets.Features({})
 
 
 
 
 
 
 
 
 
174
 
175
 
176
  class CannabisTestsConfig(datasets.BuilderConfig):
 
178
 
179
  def __init__(
180
  self,
181
+ name,
182
+ description,
183
  features,
 
 
 
 
184
  **kwargs
185
  ):
186
  """BuilderConfig for Cannabis Tests.
187
  Args:
188
+ name (str): Configuration name that determines setup.
189
+ description (str): A description for the configuration.
190
+ **kwargs: Keyword arguments forwarded to super.
 
 
 
 
 
 
191
  """
 
192
  self.features = features
193
+ super().__init__(
194
+ name=name,
195
+ description=description,
196
+ **kwargs,
197
+ )
198
 
199
  class CannabisTests(datasets.GeneratorBasedBuilder):
200
  """The Cannabis Tests dataset."""
201
 
202
+ VERSION = datasets.Version(_VERSION)
203
+ BUILDER_CONFIG_CLASS = CannabisTestsConfig
204
+ DEFAULT_CONFIG_NAME = 'rawgarden'
205
  BUILDER_CONFIGS = [
206
  CannabisTestsConfig(
207
+ name='rawgarden',
208
  description=RAWGARDEN_DESCRIPTION,
209
  features=RAWGARDEN_DETAILS,
 
 
 
210
  ),
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
211
  ]
212
 
 
 
213
  def _info(self):
 
 
 
 
 
 
 
 
 
 
 
 
214
  return datasets.DatasetInfo(
215
+ features=self.config.features,
 
 
 
216
  supervised_keys=None,
217
+ homepage=_HOMEPAGE,
218
+ citation=_CITATION,
219
+ description=_DESCRIPTION,
220
+ license=_LICENSE,
221
+ version=_VERSION,
222
+ )
223
+
224
+ def _split_generators(self, dl_manager):
225
+ """Returns SplitGenerators."""
226
+ # Future work: Make `urls` source-dynamic based on config,
227
+ # i.e. allow for MCR Labs, SC Labs, etc.
228
+ config_name = self.config.name
229
+ urls = {config_name: RAWGARDEN_DATA_URLS[config_name]}
230
+ downloaded_files = dl_manager.download_and_extract(urls)
231
+ filepath = downloaded_files[config_name]
232
+ return [
233
+ datasets.SplitGenerator(
234
+ name='details',
235
+ gen_kwargs={'filepath': filepath},
236
+ ),
237
+ # Future work: Also return `results` and `values`?
238
+ ]
239
+
240
+ def _generate_examples(self, filepath):
241
+ """This function returns the examples in the raw (text) form."""
242
+ with open(filepath) as f:
243
+ df = pd.read_csv(filepath)
244
+ for index, row in df.iterrows():
245
+ if self.config.name.endswith('results'):
246
+ _id = index
247
+ else:
248
+ _id = row['sample_hash']
249
+ obs = row.to_dict()
250
+ yield _id, obs
251
 
 
 
 
 
 
 
 
 
 
 
 
 
 
252
 
253
+ if __name__ == '__main__':
254
 
255
+ from datasets import load_dataset
256
 
257
+ # Download details.
258
+ dataset = load_dataset('cannabis_tests.py', 'rawgarden')
259
+ details = dataset['details']
260
+ assert len(details) > 0
261
+ print('Downloaded %i observations.' % len(details))