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oas-paired-sequence-data

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Update parquet parsing

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  1. README.md +4 -11
  2. data/human/.gitattributes +0 -103
  3. data/human/{1a_S1mod_S1__1_Paired_All.csv → 1279049_1_Paired_All.parquet} +2 -2
  4. data/human/{AT7me_S4__1_Paired_All.csv → 1279050_1_Paired_All.parquet} +2 -2
  5. data/human/{1b_S2__1_Paired_All.csv → 1279051_1_Paired_All.parquet} +2 -2
  6. data/human/{BT4p2_S2__1_Paired_All.csv → 1279052_1_Paired_All.parquet} +2 -2
  7. data/human/{1b_S2mod2_S1__1_Paired_All.csv → 1279053_1_Paired_All.parquet} +2 -2
  8. data/human/1279054_1_Paired_All.parquet +3 -0
  9. data/human/1279055_1_Paired_All.parquet +3 -0
  10. data/human/1279057_1_Paired_All.parquet +3 -0
  11. data/human/1279058_1_Paired_All.parquet +3 -0
  12. data/human/1279059_1_Paired_All.parquet +3 -0
  13. data/human/1279060_1_Paired_All.parquet +3 -0
  14. data/human/1279061_1_Paired_All.parquet +3 -0
  15. data/human/1279062_1_Paired_All.parquet +3 -0
  16. data/human/1279063_1_Paired_All.parquet +3 -0
  17. data/human/1279065_1_Paired_All.parquet +3 -0
  18. data/human/1279066_1_Paired_All.parquet +3 -0
  19. data/human/1279067_1_Paired_All.parquet +3 -0
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  23. data/human/1279071_1_Paired_All.parquet +3 -0
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  25. data/human/1279073_1_Paired_All.parquet +3 -0
  26. data/human/1279074_1_Paired_All.parquet +3 -0
  27. data/human/1279075_1_Paired_All.parquet +3 -0
  28. data/human/1279076_1_Paired_All.parquet +3 -0
  29. data/human/1279077_1_Paired_All.parquet +3 -0
  30. data/human/1279078_1_Paired_All.parquet +3 -0
  31. data/human/1279079_1_Paired_All.parquet +3 -0
  32. data/human/1279080_1_Paired_All.parquet +3 -0
  33. data/human/1287144_1_Paired_All.parquet +3 -0
  34. data/human/1287145_1_Paired_All.parquet +3 -0
  35. data/human/1287146_1_Paired_All.parquet +3 -0
  36. data/human/1287147_1_Paired_All.parquet +3 -0
  37. data/human/1287148_1_Paired_All.parquet +3 -0
  38. data/human/1287149_1_Paired_All.parquet +3 -0
  39. data/human/1287150_1_Paired_All.parquet +3 -0
  40. data/human/1287151_1_Paired_All.parquet +3 -0
  41. data/human/1287152_1_Paired_All.parquet +3 -0
  42. data/human/1287153_1_Paired_All.parquet +3 -0
  43. data/human/1287154_1_Paired_All.parquet +3 -0
  44. data/human/1287155_1_Paired_All.parquet +3 -0
  45. data/human/1287156_1_Paired_All.parquet +3 -0
  46. data/human/1287157_1_Paired_All.parquet +3 -0
  47. data/human/1287158_1_Paired_All.parquet +3 -0
  48. data/human/1287159_1_Paired_All.parquet +3 -0
  49. data/human/1287160_1_Paired_All.parquet +3 -0
  50. data/human/1287161_1_Paired_All.parquet +3 -0
README.md CHANGED
@@ -3,13 +3,13 @@ configs:
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  - config_name: default
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  data_files:
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  - split: human
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- path: "data/human/*.csv"
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  - split: mouse_BALB_c
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- path: "data/mouse_BALB_c/*.csv"
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  - split: mouse_C57BL_6
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- path: "data/mouse_C57BL_6/*.csv"
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  - split: rat_SD
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- path: "data/rat_SD/*.csv"
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  license: cc-by-4.0
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  ---
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  # Dataset Card for OAS Paired Sequence Data
@@ -23,10 +23,3 @@ license: cc-by-4.0
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  ### Dataset Summary
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  Paired heavy- and light-chain sequence information from the Observed Antibody Space (OAS) database, downloaded on September 9, 2023.
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-
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- Note: The following files were removed due to data loading errors:
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-
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- 1a_S1__1_Paired_All.csv ERR4082235_paired.csv ERR4082263_paired.csv ERR4082291_paired.csv SRR10313335_paired.csv
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- 1_S1__1_Paired_All.csv ERR4082243_paired.csv ERR4082267_paired.csv ERR4082299_paired.csv SRR10358523_paired.csv
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- 3d_S6__1_Paired_All.csv ERR4082251_paired.csv ERR4082275_paired.csv ERR4082303_paired.csv SRR10358524_paired.csv
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- ERR4082227_paired.csv ERR4082259_paired.csv ERR4082283_paired.csv SRR10313332_paired.csv SRR10358525_paired.csv
 
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  - config_name: default
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  data_files:
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  - split: human
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+ path: "data/human/*.parquet"
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  - split: mouse_BALB_c
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+ path: "data/mouse_BALB_c/*.parquet"
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  - split: mouse_C57BL_6
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+ path: "data/mouse_C57BL_6/*.parquet"
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  - split: rat_SD
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+ path: "data/rat_SD/*.parquet"
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  license: cc-by-4.0
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  ---
15
  # Dataset Card for OAS Paired Sequence Data
 
23
  ### Dataset Summary
24
 
25
  Paired heavy- and light-chain sequence information from the Observed Antibody Space (OAS) database, downloaded on September 9, 2023.
 
 
 
 
 
 
 
data/human/.gitattributes DELETED
@@ -1,103 +0,0 @@
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