Datasets:

Languages:
English
License:
gabrielaltay commited on
Commit
ba68baa
1 Parent(s): c9227e4

fix bigbio imports

Browse files
Files changed (1) hide show
  1. verspoor_2013.py +5 -3
verspoor_2013.py CHANGED
@@ -35,6 +35,8 @@ import datasets
35
  from .bigbiohub import kb_features
36
  from .bigbiohub import BigBioConfig
37
  from .bigbiohub import Tasks
 
 
38
 
39
  _LANGUAGES = ['English']
40
  _PUBMED = True
@@ -250,15 +252,15 @@ class Verspoor2013Dataset(datasets.GeneratorBasedBuilder):
250
  if self.config.schema == "source":
251
  txt_files = data_files["text_files"]
252
  for guid, txt_file in enumerate(txt_files):
253
- example = parsing.parse_brat_file(txt_file)
254
  example["id"] = str(guid)
255
  yield guid, example
256
 
257
  elif self.config.schema == "bigbio_kb":
258
  txt_files = data_files["text_files"]
259
  for guid, txt_file in enumerate(txt_files):
260
- example = parsing.brat_parse_to_bigbio_kb(
261
- parsing.parse_brat_file(txt_file)
262
  )
263
  example["id"] = str(guid)
264
  yield guid, example
 
35
  from .bigbiohub import kb_features
36
  from .bigbiohub import BigBioConfig
37
  from .bigbiohub import Tasks
38
+ from .bigbiohub import parse_brat_file
39
+ from .bigbiohub import brat_parse_to_bigbio_kb
40
 
41
  _LANGUAGES = ['English']
42
  _PUBMED = True
 
252
  if self.config.schema == "source":
253
  txt_files = data_files["text_files"]
254
  for guid, txt_file in enumerate(txt_files):
255
+ example = parse_brat_file(txt_file)
256
  example["id"] = str(guid)
257
  yield guid, example
258
 
259
  elif self.config.schema == "bigbio_kb":
260
  txt_files = data_files["text_files"]
261
  for guid, txt_file in enumerate(txt_files):
262
+ example = brat_parse_to_bigbio_kb(
263
+ parse_brat_file(txt_file)
264
  )
265
  example["id"] = str(guid)
266
  yield guid, example