albertvillanova HF staff commited on
Commit
95b3427
1 Parent(s): 62715c2

Fix streaming TAR archive

Browse files
Files changed (1) hide show
  1. spl_adr_200db.py +4 -7
spl_adr_200db.py CHANGED
@@ -57,7 +57,6 @@ https://bionlp.nlm.nih.gov/tac2017adversereactions/
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  import xml.etree.ElementTree as ET
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  from collections import defaultdict
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  from itertools import accumulate
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- from pathlib import Path
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  from typing import Dict, List, Tuple
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  import datasets
@@ -228,15 +227,13 @@ class SplAdr200DBDataset(datasets.GeneratorBasedBuilder):
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  urls = _URLS[_DATASETNAME][subset_name]
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- data_dir = dl_manager.download_and_extract(urls)
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-
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- data_files = (Path(data_dir) / f"{subset_name}_xml").glob("*.xml")
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
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  gen_kwargs={
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- "filepaths": tuple(data_files),
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  },
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  ),
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  ]
@@ -384,8 +381,8 @@ class SplAdr200DBDataset(datasets.GeneratorBasedBuilder):
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  def _generate_examples(self, filepaths: Tuple[Path]) -> Tuple[int, Dict]:
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  """Yields examples as (key, example) tuples."""
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- for file_index, drug_filename in enumerate(filepaths):
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- element_tree = ET.parse(drug_filename)
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  if self.config.schema == "source":
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  features = self._source_features_from_xml(
 
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  import xml.etree.ElementTree as ET
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  from collections import defaultdict
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  from itertools import accumulate
 
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  from typing import Dict, List, Tuple
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  import datasets
 
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  urls = _URLS[_DATASETNAME][subset_name]
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+ data_dir = dl_manager.download(urls)
 
 
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
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  gen_kwargs={
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+ "filepaths": dl_manager.iter_archive(data_dir),
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  },
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  ),
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  ]
 
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  def _generate_examples(self, filepaths: Tuple[Path]) -> Tuple[int, Dict]:
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  """Yields examples as (key, example) tuples."""
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+ for file_index, (drug_filename, drug_file) in enumerate(filepaths):
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+ element_tree = ET.parse(drug_file)
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  if self.config.schema == "source":
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  features = self._source_features_from_xml(