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.gitattributes DELETED
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- *.7z filter=lfs diff=lfs merge=lfs -text
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- *.arrow filter=lfs diff=lfs merge=lfs -text
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- *.bin filter=lfs diff=lfs merge=lfs -text
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- *.bz2 filter=lfs diff=lfs merge=lfs -text
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- *.ftz filter=lfs diff=lfs merge=lfs -text
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- *.gz filter=lfs diff=lfs merge=lfs -text
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- *.h5 filter=lfs diff=lfs merge=lfs -text
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- *.joblib filter=lfs diff=lfs merge=lfs -text
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- *.lfs.* filter=lfs diff=lfs merge=lfs -text
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- *.model filter=lfs diff=lfs merge=lfs -text
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- *.msgpack filter=lfs diff=lfs merge=lfs -text
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- *.onnx filter=lfs diff=lfs merge=lfs -text
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- *.ot filter=lfs diff=lfs merge=lfs -text
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- *.parquet filter=lfs diff=lfs merge=lfs -text
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- *.pb filter=lfs diff=lfs merge=lfs -text
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- *.pt filter=lfs diff=lfs merge=lfs -text
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- *.pth filter=lfs diff=lfs merge=lfs -text
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- *.rar filter=lfs diff=lfs merge=lfs -text
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- saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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- *.tar.* filter=lfs diff=lfs merge=lfs -text
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- *.tflite filter=lfs diff=lfs merge=lfs -text
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- *.tgz filter=lfs diff=lfs merge=lfs -text
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- *.wasm filter=lfs diff=lfs merge=lfs -text
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- *.xz filter=lfs diff=lfs merge=lfs -text
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- *.zip filter=lfs diff=lfs merge=lfs -text
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- *.zstandard filter=lfs diff=lfs merge=lfs -text
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- *tfevents* filter=lfs diff=lfs merge=lfs -text
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- # Audio files - uncompressed
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- *.pcm filter=lfs diff=lfs merge=lfs -text
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- *.sam filter=lfs diff=lfs merge=lfs -text
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- *.raw filter=lfs diff=lfs merge=lfs -text
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- # Audio files - compressed
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- *.aac filter=lfs diff=lfs merge=lfs -text
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- *.flac filter=lfs diff=lfs merge=lfs -text
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- *.mp3 filter=lfs diff=lfs merge=lfs -text
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- *.ogg filter=lfs diff=lfs merge=lfs -text
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- *.wav filter=lfs diff=lfs merge=lfs -text
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
README.md DELETED
@@ -1,31 +0,0 @@
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- ---
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- language: en
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- license: apache-2.0
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- multilinguality: monolingual
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- pretty_name: SciTail
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- paperswithcode_id: scitail
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- ---
8
-
9
-
10
- # Dataset Card for SciTail
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-
12
- ## Dataset Description
13
-
14
- - **Homepage:** https://allenai.org/data/scitail
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- - **Pubmed:** False
16
- - **Public:** True
17
- - **Tasks:** Textual Entailment
18
-
19
-
20
- The SciTail dataset is an entailment dataset created from multiple-choice science exams and web sentences. Each question and the correct answer choice are converted into an assertive statement to form the hypothesis. We use information retrieval to obtain relevant text from a large text corpus of web sentences, and use these sentences as a premise P. We crowd source the annotation of such premise-hypothesis pair as supports (entails) or not (neutral), in order to create the SciTail dataset. The dataset contains 27,026 examples with 10,101 examples with entails label and 16,925 examples with neutral label.
21
-
22
-
23
- ## Citation Information
24
-
25
- ```
26
- @inproceedings{scitail,
27
- author = {Tushar Khot and Ashish Sabharwal and Peter Clark},
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- booktitle = {AAAI}
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- title = {SciTail: A Textual Entailment Dataset from Science Question Answering},
30
- year = {2018}
31
- ```
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
bigbiohub.py DELETED
@@ -1,556 +0,0 @@
1
- from collections import defaultdict
2
- from dataclasses import dataclass
3
- from enum import Enum
4
- import logging
5
- from pathlib import Path
6
- from types import SimpleNamespace
7
- from typing import TYPE_CHECKING, Dict, Iterable, List, Tuple
8
-
9
- import datasets
10
-
11
- if TYPE_CHECKING:
12
- import bioc
13
-
14
- logger = logging.getLogger(__name__)
15
-
16
-
17
- BigBioValues = SimpleNamespace(NULL="<BB_NULL_STR>")
18
-
19
-
20
- @dataclass
21
- class BigBioConfig(datasets.BuilderConfig):
22
- """BuilderConfig for BigBio."""
23
-
24
- name: str = None
25
- version: datasets.Version = None
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- description: str = None
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- schema: str = None
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- subset_id: str = None
29
-
30
-
31
- class Tasks(Enum):
32
- NAMED_ENTITY_RECOGNITION = "NER"
33
- NAMED_ENTITY_DISAMBIGUATION = "NED"
34
- EVENT_EXTRACTION = "EE"
35
- RELATION_EXTRACTION = "RE"
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- COREFERENCE_RESOLUTION = "COREF"
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- QUESTION_ANSWERING = "QA"
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- TEXTUAL_ENTAILMENT = "TE"
39
- SEMANTIC_SIMILARITY = "STS"
40
- TEXT_PAIRS_CLASSIFICATION = "TXT2CLASS"
41
- PARAPHRASING = "PARA"
42
- TRANSLATION = "TRANSL"
43
- SUMMARIZATION = "SUM"
44
- TEXT_CLASSIFICATION = "TXTCLASS"
45
-
46
-
47
- entailment_features = datasets.Features(
48
- {
49
- "id": datasets.Value("string"),
50
- "premise": datasets.Value("string"),
51
- "hypothesis": datasets.Value("string"),
52
- "label": datasets.Value("string"),
53
- }
54
- )
55
-
56
- pairs_features = datasets.Features(
57
- {
58
- "id": datasets.Value("string"),
59
- "document_id": datasets.Value("string"),
60
- "text_1": datasets.Value("string"),
61
- "text_2": datasets.Value("string"),
62
- "label": datasets.Value("string"),
63
- }
64
- )
65
-
66
- qa_features = datasets.Features(
67
- {
68
- "id": datasets.Value("string"),
69
- "question_id": datasets.Value("string"),
70
- "document_id": datasets.Value("string"),
71
- "question": datasets.Value("string"),
72
- "type": datasets.Value("string"),
73
- "choices": [datasets.Value("string")],
74
- "context": datasets.Value("string"),
75
- "answer": datasets.Sequence(datasets.Value("string")),
76
- }
77
- )
78
-
79
- text_features = datasets.Features(
80
- {
81
- "id": datasets.Value("string"),
82
- "document_id": datasets.Value("string"),
83
- "text": datasets.Value("string"),
84
- "labels": [datasets.Value("string")],
85
- }
86
- )
87
-
88
- text2text_features = datasets.Features(
89
- {
90
- "id": datasets.Value("string"),
91
- "document_id": datasets.Value("string"),
92
- "text_1": datasets.Value("string"),
93
- "text_2": datasets.Value("string"),
94
- "text_1_name": datasets.Value("string"),
95
- "text_2_name": datasets.Value("string"),
96
- }
97
- )
98
-
99
- kb_features = datasets.Features(
100
- {
101
- "id": datasets.Value("string"),
102
- "document_id": datasets.Value("string"),
103
- "passages": [
104
- {
105
- "id": datasets.Value("string"),
106
- "type": datasets.Value("string"),
107
- "text": datasets.Sequence(datasets.Value("string")),
108
- "offsets": datasets.Sequence([datasets.Value("int32")]),
109
- }
110
- ],
111
- "entities": [
112
- {
113
- "id": datasets.Value("string"),
114
- "type": datasets.Value("string"),
115
- "text": datasets.Sequence(datasets.Value("string")),
116
- "offsets": datasets.Sequence([datasets.Value("int32")]),
117
- "normalized": [
118
- {
119
- "db_name": datasets.Value("string"),
120
- "db_id": datasets.Value("string"),
121
- }
122
- ],
123
- }
124
- ],
125
- "events": [
126
- {
127
- "id": datasets.Value("string"),
128
- "type": datasets.Value("string"),
129
- # refers to the text_bound_annotation of the trigger
130
- "trigger": {
131
- "text": datasets.Sequence(datasets.Value("string")),
132
- "offsets": datasets.Sequence([datasets.Value("int32")]),
133
- },
134
- "arguments": [
135
- {
136
- "role": datasets.Value("string"),
137
- "ref_id": datasets.Value("string"),
138
- }
139
- ],
140
- }
141
- ],
142
- "coreferences": [
143
- {
144
- "id": datasets.Value("string"),
145
- "entity_ids": datasets.Sequence(datasets.Value("string")),
146
- }
147
- ],
148
- "relations": [
149
- {
150
- "id": datasets.Value("string"),
151
- "type": datasets.Value("string"),
152
- "arg1_id": datasets.Value("string"),
153
- "arg2_id": datasets.Value("string"),
154
- "normalized": [
155
- {
156
- "db_name": datasets.Value("string"),
157
- "db_id": datasets.Value("string"),
158
- }
159
- ],
160
- }
161
- ],
162
- }
163
- )
164
-
165
-
166
- def get_texts_and_offsets_from_bioc_ann(ann: "bioc.BioCAnnotation") -> Tuple:
167
-
168
- offsets = [(loc.offset, loc.offset + loc.length) for loc in ann.locations]
169
-
170
- text = ann.text
171
-
172
- if len(offsets) > 1:
173
- i = 0
174
- texts = []
175
- for start, end in offsets:
176
- chunk_len = end - start
177
- texts.append(text[i : chunk_len + i])
178
- i += chunk_len
179
- while i < len(text) and text[i] == " ":
180
- i += 1
181
- else:
182
- texts = [text]
183
-
184
- return offsets, texts
185
-
186
-
187
- def remove_prefix(a: str, prefix: str) -> str:
188
- if a.startswith(prefix):
189
- a = a[len(prefix) :]
190
- return a
191
-
192
-
193
- def parse_brat_file(
194
- txt_file: Path,
195
- annotation_file_suffixes: List[str] = None,
196
- parse_notes: bool = False,
197
- ) -> Dict:
198
- """
199
- Parse a brat file into the schema defined below.
200
- `txt_file` should be the path to the brat '.txt' file you want to parse, e.g. 'data/1234.txt'
201
- Assumes that the annotations are contained in one or more of the corresponding '.a1', '.a2' or '.ann' files,
202
- e.g. 'data/1234.ann' or 'data/1234.a1' and 'data/1234.a2'.
203
- Will include annotator notes, when `parse_notes == True`.
204
- brat_features = datasets.Features(
205
- {
206
- "id": datasets.Value("string"),
207
- "document_id": datasets.Value("string"),
208
- "text": datasets.Value("string"),
209
- "text_bound_annotations": [ # T line in brat, e.g. type or event trigger
210
- {
211
- "offsets": datasets.Sequence([datasets.Value("int32")]),
212
- "text": datasets.Sequence(datasets.Value("string")),
213
- "type": datasets.Value("string"),
214
- "id": datasets.Value("string"),
215
- }
216
- ],
217
- "events": [ # E line in brat
218
- {
219
- "trigger": datasets.Value(
220
- "string"
221
- ), # refers to the text_bound_annotation of the trigger,
222
- "id": datasets.Value("string"),
223
- "type": datasets.Value("string"),
224
- "arguments": datasets.Sequence(
225
- {
226
- "role": datasets.Value("string"),
227
- "ref_id": datasets.Value("string"),
228
- }
229
- ),
230
- }
231
- ],
232
- "relations": [ # R line in brat
233
- {
234
- "id": datasets.Value("string"),
235
- "head": {
236
- "ref_id": datasets.Value("string"),
237
- "role": datasets.Value("string"),
238
- },
239
- "tail": {
240
- "ref_id": datasets.Value("string"),
241
- "role": datasets.Value("string"),
242
- },
243
- "type": datasets.Value("string"),
244
- }
245
- ],
246
- "equivalences": [ # Equiv line in brat
247
- {
248
- "id": datasets.Value("string"),
249
- "ref_ids": datasets.Sequence(datasets.Value("string")),
250
- }
251
- ],
252
- "attributes": [ # M or A lines in brat
253
- {
254
- "id": datasets.Value("string"),
255
- "type": datasets.Value("string"),
256
- "ref_id": datasets.Value("string"),
257
- "value": datasets.Value("string"),
258
- }
259
- ],
260
- "normalizations": [ # N lines in brat
261
- {
262
- "id": datasets.Value("string"),
263
- "type": datasets.Value("string"),
264
- "ref_id": datasets.Value("string"),
265
- "resource_name": datasets.Value(
266
- "string"
267
- ), # Name of the resource, e.g. "Wikipedia"
268
- "cuid": datasets.Value(
269
- "string"
270
- ), # ID in the resource, e.g. 534366
271
- "text": datasets.Value(
272
- "string"
273
- ), # Human readable description/name of the entity, e.g. "Barack Obama"
274
- }
275
- ],
276
- ### OPTIONAL: Only included when `parse_notes == True`
277
- "notes": [ # # lines in brat
278
- {
279
- "id": datasets.Value("string"),
280
- "type": datasets.Value("string"),
281
- "ref_id": datasets.Value("string"),
282
- "text": datasets.Value("string"),
283
- }
284
- ],
285
- },
286
- )
287
- """
288
-
289
- example = {}
290
- example["document_id"] = txt_file.with_suffix("").name
291
- with txt_file.open() as f:
292
- example["text"] = f.read()
293
-
294
- # If no specific suffixes of the to-be-read annotation files are given - take standard suffixes
295
- # for event extraction
296
- if annotation_file_suffixes is None:
297
- annotation_file_suffixes = [".a1", ".a2", ".ann"]
298
-
299
- if len(annotation_file_suffixes) == 0:
300
- raise AssertionError(
301
- "At least one suffix for the to-be-read annotation files should be given!"
302
- )
303
-
304
- ann_lines = []
305
- for suffix in annotation_file_suffixes:
306
- annotation_file = txt_file.with_suffix(suffix)
307
- if annotation_file.exists():
308
- with annotation_file.open() as f:
309
- ann_lines.extend(f.readlines())
310
-
311
- example["text_bound_annotations"] = []
312
- example["events"] = []
313
- example["relations"] = []
314
- example["equivalences"] = []
315
- example["attributes"] = []
316
- example["normalizations"] = []
317
-
318
- if parse_notes:
319
- example["notes"] = []
320
-
321
- for line in ann_lines:
322
- line = line.strip()
323
- if not line:
324
- continue
325
-
326
- if line.startswith("T"): # Text bound
327
- ann = {}
328
- fields = line.split("\t")
329
-
330
- ann["id"] = fields[0]
331
- ann["type"] = fields[1].split()[0]
332
- ann["offsets"] = []
333
- span_str = remove_prefix(fields[1], (ann["type"] + " "))
334
- text = fields[2]
335
- for span in span_str.split(";"):
336
- start, end = span.split()
337
- ann["offsets"].append([int(start), int(end)])
338
-
339
- # Heuristically split text of discontiguous entities into chunks
340
- ann["text"] = []
341
- if len(ann["offsets"]) > 1:
342
- i = 0
343
- for start, end in ann["offsets"]:
344
- chunk_len = end - start
345
- ann["text"].append(text[i : chunk_len + i])
346
- i += chunk_len
347
- while i < len(text) and text[i] == " ":
348
- i += 1
349
- else:
350
- ann["text"] = [text]
351
-
352
- example["text_bound_annotations"].append(ann)
353
-
354
- elif line.startswith("E"):
355
- ann = {}
356
- fields = line.split("\t")
357
-
358
- ann["id"] = fields[0]
359
-
360
- ann["type"], ann["trigger"] = fields[1].split()[0].split(":")
361
-
362
- ann["arguments"] = []
363
- for role_ref_id in fields[1].split()[1:]:
364
- argument = {
365
- "role": (role_ref_id.split(":"))[0],
366
- "ref_id": (role_ref_id.split(":"))[1],
367
- }
368
- ann["arguments"].append(argument)
369
-
370
- example["events"].append(ann)
371
-
372
- elif line.startswith("R"):
373
- ann = {}
374
- fields = line.split("\t")
375
-
376
- ann["id"] = fields[0]
377
- ann["type"] = fields[1].split()[0]
378
-
379
- ann["head"] = {
380
- "role": fields[1].split()[1].split(":")[0],
381
- "ref_id": fields[1].split()[1].split(":")[1],
382
- }
383
- ann["tail"] = {
384
- "role": fields[1].split()[2].split(":")[0],
385
- "ref_id": fields[1].split()[2].split(":")[1],
386
- }
387
-
388
- example["relations"].append(ann)
389
-
390
- # '*' seems to be the legacy way to mark equivalences,
391
- # but I couldn't find any info on the current way
392
- # this might have to be adapted dependent on the brat version
393
- # of the annotation
394
- elif line.startswith("*"):
395
- ann = {}
396
- fields = line.split("\t")
397
-
398
- ann["id"] = fields[0]
399
- ann["ref_ids"] = fields[1].split()[1:]
400
-
401
- example["equivalences"].append(ann)
402
-
403
- elif line.startswith("A") or line.startswith("M"):
404
- ann = {}
405
- fields = line.split("\t")
406
-
407
- ann["id"] = fields[0]
408
-
409
- info = fields[1].split()
410
- ann["type"] = info[0]
411
- ann["ref_id"] = info[1]
412
-
413
- if len(info) > 2:
414
- ann["value"] = info[2]
415
- else:
416
- ann["value"] = ""
417
-
418
- example["attributes"].append(ann)
419
-
420
- elif line.startswith("N"):
421
- ann = {}
422
- fields = line.split("\t")
423
-
424
- ann["id"] = fields[0]
425
- ann["text"] = fields[2]
426
-
427
- info = fields[1].split()
428
-
429
- ann["type"] = info[0]
430
- ann["ref_id"] = info[1]
431
- ann["resource_name"] = info[2].split(":")[0]
432
- ann["cuid"] = info[2].split(":")[1]
433
- example["normalizations"].append(ann)
434
-
435
- elif parse_notes and line.startswith("#"):
436
- ann = {}
437
- fields = line.split("\t")
438
-
439
- ann["id"] = fields[0]
440
- ann["text"] = fields[2] if len(fields) == 3 else BigBioValues.NULL
441
-
442
- info = fields[1].split()
443
-
444
- ann["type"] = info[0]
445
- ann["ref_id"] = info[1]
446
- example["notes"].append(ann)
447
-
448
- return example
449
-
450
-
451
- def brat_parse_to_bigbio_kb(brat_parse: Dict) -> Dict:
452
- """
453
- Transform a brat parse (conforming to the standard brat schema) obtained with
454
- `parse_brat_file` into a dictionary conforming to the `bigbio-kb` schema (as defined in ../schemas/kb.py)
455
- :param brat_parse:
456
- """
457
-
458
- unified_example = {}
459
-
460
- # Prefix all ids with document id to ensure global uniqueness,
461
- # because brat ids are only unique within their document
462
- id_prefix = brat_parse["document_id"] + "_"
463
-
464
- # identical
465
- unified_example["document_id"] = brat_parse["document_id"]
466
- unified_example["passages"] = [
467
- {
468
- "id": id_prefix + "_text",
469
- "type": "abstract",
470
- "text": [brat_parse["text"]],
471
- "offsets": [[0, len(brat_parse["text"])]],
472
- }
473
- ]
474
-
475
- # get normalizations
476
- ref_id_to_normalizations = defaultdict(list)
477
- for normalization in brat_parse["normalizations"]:
478
- ref_id_to_normalizations[normalization["ref_id"]].append(
479
- {
480
- "db_name": normalization["resource_name"],
481
- "db_id": normalization["cuid"],
482
- }
483
- )
484
-
485
- # separate entities and event triggers
486
- unified_example["events"] = []
487
- non_event_ann = brat_parse["text_bound_annotations"].copy()
488
- for event in brat_parse["events"]:
489
- event = event.copy()
490
- event["id"] = id_prefix + event["id"]
491
- trigger = next(
492
- tr
493
- for tr in brat_parse["text_bound_annotations"]
494
- if tr["id"] == event["trigger"]
495
- )
496
- if trigger in non_event_ann:
497
- non_event_ann.remove(trigger)
498
- event["trigger"] = {
499
- "text": trigger["text"].copy(),
500
- "offsets": trigger["offsets"].copy(),
501
- }
502
- for argument in event["arguments"]:
503
- argument["ref_id"] = id_prefix + argument["ref_id"]
504
-
505
- unified_example["events"].append(event)
506
-
507
- unified_example["entities"] = []
508
- anno_ids = [ref_id["id"] for ref_id in non_event_ann]
509
- for ann in non_event_ann:
510
- entity_ann = ann.copy()
511
- entity_ann["id"] = id_prefix + entity_ann["id"]
512
- entity_ann["normalized"] = ref_id_to_normalizations[ann["id"]]
513
- unified_example["entities"].append(entity_ann)
514
-
515
- # massage relations
516
- unified_example["relations"] = []
517
- skipped_relations = set()
518
- for ann in brat_parse["relations"]:
519
- if (
520
- ann["head"]["ref_id"] not in anno_ids
521
- or ann["tail"]["ref_id"] not in anno_ids
522
- ):
523
- skipped_relations.add(ann["id"])
524
- continue
525
- unified_example["relations"].append(
526
- {
527
- "arg1_id": id_prefix + ann["head"]["ref_id"],
528
- "arg2_id": id_prefix + ann["tail"]["ref_id"],
529
- "id": id_prefix + ann["id"],
530
- "type": ann["type"],
531
- "normalized": [],
532
- }
533
- )
534
- if len(skipped_relations) > 0:
535
- example_id = brat_parse["document_id"]
536
- logger.info(
537
- f"Example:{example_id}: The `bigbio_kb` schema allows `relations` only between entities."
538
- f" Skip (for now): "
539
- f"{list(skipped_relations)}"
540
- )
541
-
542
- # get coreferences
543
- unified_example["coreferences"] = []
544
- for i, ann in enumerate(brat_parse["equivalences"], start=1):
545
- is_entity_cluster = True
546
- for ref_id in ann["ref_ids"]:
547
- if not ref_id.startswith("T"): # not textbound -> no entity
548
- is_entity_cluster = False
549
- elif ref_id not in anno_ids: # event trigger -> no entity
550
- is_entity_cluster = False
551
- if is_entity_cluster:
552
- entity_ids = [id_prefix + i for i in ann["ref_ids"]]
553
- unified_example["coreferences"].append(
554
- {"id": id_prefix + str(i), "entity_ids": entity_ids}
555
- )
556
- return unified_example
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
scitail.py DELETED
@@ -1,174 +0,0 @@
1
- # coding=utf-8
2
- # Copyright 2022 The HuggingFace Datasets Authors and the current dataset script contributor.
3
- #
4
- # Licensed under the Apache License, Version 2.0 (the "License");
5
- # you may not use this file except in compliance with the License.
6
- # You may obtain a copy of the License at
7
- #
8
- # http://www.apache.org/licenses/LICENSE-2.0
9
- #
10
- # Unless required by applicable law or agreed to in writing, software
11
- # distributed under the License is distributed on an "AS IS" BASIS,
12
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
13
- # See the License for the specific language governing permissions and
14
- # limitations under the License.
15
-
16
- """
17
- The SciTail dataset is an entailment dataset created from multiple-choice science exams and
18
- web sentences. Each question and the correct answer choice are converted into an assertive
19
- statement to form the hypothesis. We use information retrieval to obtain relevant text from
20
- a large text corpus of web sentences, and use these sentences as a premise P. We crowdsource
21
- the annotation of such premise-hypothesis pair as supports (entails) or not (neutral), in order
22
- to create the SciTail dataset. The dataset contains 27,026 examples with 10,101 examples with
23
- entails label and 16,925 examples with neutral label.
24
- """
25
- import os
26
-
27
- import datasets
28
- import pandas as pd
29
-
30
- from .bigbiohub import entailment_features
31
- from .bigbiohub import BigBioConfig
32
- from .bigbiohub import Tasks
33
-
34
-
35
- _LANGUAGES = ["English"]
36
- _PUBMED = False
37
- _LOCAL = False
38
- _CITATION = """\
39
- @inproceedings{scitail,
40
- author = {Tushar Khot and Ashish Sabharwal and Peter Clark},
41
- booktitle = {AAAI}
42
- title = {SciTail: A Textual Entailment Dataset from Science Question Answering},
43
- year = {2018}
44
- }
45
- """
46
-
47
- _DATASETNAME = "scitail"
48
- _DISPLAYNAME = "SciTail"
49
-
50
- _DESCRIPTION = """\
51
- The SciTail dataset is an entailment dataset created from multiple-choice science exams and
52
- web sentences. Each question and the correct answer choice are converted into an assertive
53
- statement to form the hypothesis. We use information retrieval to obtain relevant text from
54
- a large text corpus of web sentences, and use these sentences as a premise P. We crowdsource
55
- the annotation of such premise-hypothesis pair as supports (entails) or not (neutral), in order
56
- to create the SciTail dataset. The dataset contains 27,026 examples with 10,101 examples with
57
- entails label and 16,925 examples with neutral label.
58
- """
59
-
60
- _HOMEPAGE = "https://allenai.org/data/scitail"
61
-
62
- _LICENSE = "APACHE_2p0"
63
-
64
- _URLS = {
65
- _DATASETNAME: "https://ai2-public-datasets.s3.amazonaws.com/scitail/SciTailV1.1.zip",
66
- }
67
-
68
- _SUPPORTED_TASKS = [Tasks.TEXTUAL_ENTAILMENT]
69
-
70
- _SOURCE_VERSION = "1.1.0"
71
-
72
- _BIGBIO_VERSION = "1.0.0"
73
-
74
-
75
- LABEL_MAP = {"entails": "entailment", "neutral": "neutral"}
76
-
77
-
78
- class SciTailDataset(datasets.GeneratorBasedBuilder):
79
- """TODO: Short description of my dataset."""
80
-
81
- SOURCE_VERSION = datasets.Version(_SOURCE_VERSION)
82
- BIGBIO_VERSION = datasets.Version(_BIGBIO_VERSION)
83
-
84
- BUILDER_CONFIGS = [
85
- BigBioConfig(
86
- name="scitail_source",
87
- version=SOURCE_VERSION,
88
- description="SciTail source schema",
89
- schema="source",
90
- subset_id="scitail",
91
- ),
92
- BigBioConfig(
93
- name="scitail_bigbio_te",
94
- version=BIGBIO_VERSION,
95
- description="SciTail BigBio schema",
96
- schema="bigbio_te",
97
- subset_id="scitail",
98
- ),
99
- ]
100
-
101
- DEFAULT_CONFIG_NAME = "scitail_source"
102
-
103
- def _info(self):
104
-
105
- if self.config.schema == "source":
106
- features = datasets.Features(
107
- {
108
- "id": datasets.Value("string"),
109
- "premise": datasets.Value("string"),
110
- "hypothesis": datasets.Value("string"),
111
- "label": datasets.Value("string"),
112
- }
113
- )
114
-
115
- elif self.config.schema == "bigbio_te":
116
- features = entailment_features
117
-
118
- return datasets.DatasetInfo(
119
- description=_DESCRIPTION,
120
- features=features,
121
- homepage=_HOMEPAGE,
122
- license=str(_LICENSE),
123
- citation=_CITATION,
124
- )
125
-
126
- def _split_generators(self, dl_manager):
127
-
128
- urls = _URLS[_DATASETNAME]
129
- data_dir = dl_manager.download_and_extract(urls)
130
-
131
- return [
132
- datasets.SplitGenerator(
133
- name=datasets.Split.TRAIN,
134
- gen_kwargs={
135
- "filepath": os.path.join(
136
- data_dir, "SciTailV1.1", "tsv_format", "scitail_1.0_train.tsv"
137
- ),
138
- },
139
- ),
140
- datasets.SplitGenerator(
141
- name=datasets.Split.TEST,
142
- gen_kwargs={
143
- "filepath": os.path.join(
144
- data_dir, "SciTailV1.1", "tsv_format", "scitail_1.0_test.tsv"
145
- ),
146
- },
147
- ),
148
- datasets.SplitGenerator(
149
- name=datasets.Split.VALIDATION,
150
- gen_kwargs={
151
- "filepath": os.path.join(
152
- data_dir, "SciTailV1.1", "tsv_format", "scitail_1.0_dev.tsv"
153
- ),
154
- },
155
- ),
156
- ]
157
-
158
- def _generate_examples(self, filepath):
159
- # since examples can contain quotes mid text set quoting to QUOTE_NONE (3) when reading tsv
160
- # e.g.: ... and apply specific "tools" to examples and ...
161
- data = pd.read_csv(
162
- filepath, sep="\t", names=["premise", "hypothesis", "label"], quoting=3
163
- )
164
- data["id"] = data.index
165
-
166
- if self.config.schema == "source":
167
- for _, row in data.iterrows():
168
- yield row["id"], row.to_dict()
169
-
170
- elif self.config.schema == "bigbio_te":
171
- # normalize labels
172
- data["label"] = data["label"].apply(lambda x: LABEL_MAP[x])
173
- for _, row in data.iterrows():
174
- yield row["id"], row.to_dict()
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
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