leonweber commited on
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9d8704e
1 Parent(s): 4328744

Update README (now for real)

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  1. czi_drsm.py +9 -9
czi_drsm.py CHANGED
@@ -60,12 +60,9 @@ import datasets
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  import pandas as pd
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  from pathlib import Path
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- from .bigbiohub import text_features, BigBioConfig, Tasks
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-
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- #from .bigbiohub import BigBioConfig
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- #from .bigbiohub import Tasks
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-
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- #from .bigbiohub import
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  _LOCAL = False
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@@ -89,6 +86,7 @@ _DESCRIPTION = """\
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  Research Article document classification dataset based on aspects of disease research. Currently, the dataset consists of three subsets:
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  (A) classifies title/abstracts of papers into most popular subtypes of clinical, basic, and translational papers (~20k papers);
 
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  - Clinical Characteristics, Disease Pathology, and Diagnosis -
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  Text that describes (A) symptoms, signs, or ‘phenotype’ of a disease;
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  (B) the effects of the disease on patient organs, tissues, or cells;
@@ -111,13 +109,15 @@ Research Article document classification dataset based on aspects of disease res
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  approved for one use is being applied to a new disease).
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  (B) identifies whether a title/abstract of a paper describes substantive research into Quality of Life (~10k papers);
 
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  - -1 - the paper is not a primary experimental study in rare disease
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  - 0 - the study does not directly investigate quality of life
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  - 1 - the study investigates qol but not as its primary contribution
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  - 2 - the study's primary contribution centers on quality of life measures
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  (C) identifies if a paper is a natural history study (~10k papers).
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- ` - -1 - the paper is not a primary experimental study in rare disease
 
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  - 0 - the study is not directly investigating the natural history of a disease
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  - 1 - the study includes some elements a natural history but not as its primary contribution
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  - 2 - the study's primary contribution centers on observing the time course of a rare disease
@@ -126,7 +126,7 @@ These classifications are particularly relevant in rare disease research, a fiel
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  """
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  _HOMEPAGE = "https://github.com/chanzuckerberg/DRSM-corpus/"
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- _LICENSE = "CC0_1p0"
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  _LANGUAGES = ['English']
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  _PUBMED = False
@@ -143,7 +143,7 @@ _URLS = {
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  'nhs': "https://raw.githubusercontent.com/chanzuckerberg/DRSM-corpus/main/v2/nhs_all_2023_03_31.tsv"
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  }
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- _SUPPORTED_TASKS = [Tasks.TEXT_CLASSIFICATION]
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  _SOURCE_VERSION = "1.0.0"
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  _BIGBIO_VERSION = "1.0.0"
 
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  import pandas as pd
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  from pathlib import Path
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+ from .bigbiohub import text_features
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+ from .bigbiohub import BigBioConfig
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+ from .bigbiohub import Tasks
 
 
 
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  _LOCAL = False
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  Research Article document classification dataset based on aspects of disease research. Currently, the dataset consists of three subsets:
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  (A) classifies title/abstracts of papers into most popular subtypes of clinical, basic, and translational papers (~20k papers);
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+
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  - Clinical Characteristics, Disease Pathology, and Diagnosis -
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  Text that describes (A) symptoms, signs, or ‘phenotype’ of a disease;
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  (B) the effects of the disease on patient organs, tissues, or cells;
 
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  approved for one use is being applied to a new disease).
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  (B) identifies whether a title/abstract of a paper describes substantive research into Quality of Life (~10k papers);
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+
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  - -1 - the paper is not a primary experimental study in rare disease
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  - 0 - the study does not directly investigate quality of life
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  - 1 - the study investigates qol but not as its primary contribution
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  - 2 - the study's primary contribution centers on quality of life measures
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  (C) identifies if a paper is a natural history study (~10k papers).
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+ `
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+ - -1 - the paper is not a primary experimental study in rare disease
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  - 0 - the study is not directly investigating the natural history of a disease
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  - 1 - the study includes some elements a natural history but not as its primary contribution
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  - 2 - the study's primary contribution centers on observing the time course of a rare disease
 
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  """
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  _HOMEPAGE = "https://github.com/chanzuckerberg/DRSM-corpus/"
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+ _LICENSE = 'CC0_1p0'
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  _LANGUAGES = ['English']
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  _PUBMED = False
 
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  'nhs': "https://raw.githubusercontent.com/chanzuckerberg/DRSM-corpus/main/v2/nhs_all_2023_03_31.tsv"
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  }
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+ _SUPPORTED_TASKS = [Tasks.TEXT_CLASSIFICATION]
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  _SOURCE_VERSION = "1.0.0"
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  _BIGBIO_VERSION = "1.0.0"