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gabrielaltay commited on
Commit
dc52725
·
1 Parent(s): 481b3b8

fix bigbio imports

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Files changed (1) hide show
  1. chia.py +3 -1
chia.py CHANGED
@@ -26,6 +26,8 @@ import datasets
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  from .bigbiohub import kb_features
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  from .bigbiohub import BigBioConfig
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  from .bigbiohub import Tasks
 
 
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  _LANGUAGES = ['English']
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  _PUBMED = False
@@ -549,7 +551,7 @@ def parse_brat_file(txt_file: Path, annotation_file_suffixes: List[str] = None)
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  ann["text"] = [fields[2]]
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  ann["type"] = fields[1].split()[0]
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  ann["offsets"] = []
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- span_str = parsing.remove_prefix(fields[1], (ann["type"] + " "))
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  for span in span_str.split(";"):
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  start, end = span.split()
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  ann["offsets"].append([int(start), int(end)])
 
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  from .bigbiohub import kb_features
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  from .bigbiohub import BigBioConfig
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  from .bigbiohub import Tasks
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+ from .bigbiohub import remove_prefix
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+
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  _LANGUAGES = ['English']
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  _PUBMED = False
 
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  ann["text"] = [fields[2]]
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  ann["type"] = fields[1].split()[0]
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  ann["offsets"] = []
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+ span_str = remove_prefix(fields[1], (ann["type"] + " "))
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  for span in span_str.split(";"):
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  start, end = span.split()
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  ann["offsets"].append([int(start), int(end)])