Commit
•
d1a153f
1
Parent(s):
04980fa
Support streaming (#2)
Browse files- Add data files (f3252580b72becc567f3cf388198fb7dd4d494da)
- Update loading script (de29136e9b2b21e1317c2c8feb78730dce2796a7)
Co-authored-by: Albert Villanova <albertvillanova@users.noreply.huggingface.co>
- bionlp_st_2013_gro.py +21 -23
- data/devel.zip +3 -0
- data/test.zip +3 -0
- data/train.zip +3 -0
bionlp_st_2013_gro.py
CHANGED
@@ -15,7 +15,7 @@
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from pathlib import Path
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-
from typing import List
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import datasets
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@@ -62,8 +62,9 @@ _HOMEPAGE = "https://github.com/openbiocorpora/bionlp-st-2013-gro"
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_LICENSE = 'GENIA Project License for Annotated Corpora'
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_URLs = {
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"
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"
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}
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_SUPPORTED_TASKS = [
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@@ -197,47 +198,44 @@ class bionlp_st_2013_gro(datasets.GeneratorBasedBuilder):
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def _split_generators(
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self, dl_manager: datasets.DownloadManager
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) -> List[datasets.SplitGenerator]:
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-
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my_urls = _URLs[self.config.schema]
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data_dir = Path(dl_manager.download_and_extract(my_urls))
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data_files = {
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"train": data_dir
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/ f"bionlp-st-2013-gro-master"
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/ "original-data"
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/ "train",
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"dev": data_dir / f"bionlp-st-2013-gro-master" / "original-data" / "devel",
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"test": data_dir / f"bionlp-st-2013-gro-master" / "original-data" / "test",
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}
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-
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={"data_files": data_files["train"]},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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gen_kwargs={"data_files": data_files["
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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-
gen_kwargs={"data_files": data_files["test"]},
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),
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]
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def _generate_examples(self, data_files:
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if self.config.schema == "source":
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-
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for
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example = parse_brat_file(txt_file)
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example["id"] = str(guid)
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yield guid, example
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elif self.config.schema == "bigbio_kb":
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-
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for
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example = brat_parse_to_bigbio_kb(
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parse_brat_file(txt_file)
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)
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example["id"] = str(guid)
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yield guid, example
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else:
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raise ValueError(f"Invalid config: {self.config.name}")
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from pathlib import Path
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from typing import Iterable, List
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import datasets
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_LICENSE = 'GENIA Project License for Annotated Corpora'
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_URLs = {
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"train": "data/train.zip",
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"validation": "data/devel.zip",
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"test": "data/test.zip",
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}
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_SUPPORTED_TASKS = [
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def _split_generators(
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self, dl_manager: datasets.DownloadManager
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) -> List[datasets.SplitGenerator]:
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data_files = dl_manager.download_and_extract(_URLs)
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return [
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datasets.SplitGenerator(
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name=datasets.Split.TRAIN,
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gen_kwargs={"data_files": dl_manager.iter_files(data_files["train"])},
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),
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datasets.SplitGenerator(
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name=datasets.Split.VALIDATION,
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gen_kwargs={"data_files": dl_manager.iter_files(data_files["validation"])},
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),
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datasets.SplitGenerator(
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name=datasets.Split.TEST,
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gen_kwargs={"data_files": dl_manager.iter_files(data_files["test"])},
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),
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]
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def _generate_examples(self, data_files: Iterable[str]):
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if self.config.schema == "source":
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guid = 0
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for data_file in data_files:
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txt_file = Path(data_file)
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if txt_file.suffix != ".txt":
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continue
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example = parse_brat_file(txt_file)
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example["id"] = str(guid)
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yield guid, example
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guid += 1
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elif self.config.schema == "bigbio_kb":
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guid = 0
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for data_file in data_files:
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txt_file = Path(data_file)
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if txt_file.suffix != ".txt":
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continue
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example = brat_parse_to_bigbio_kb(
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parse_brat_file(txt_file)
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)
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example["id"] = str(guid)
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yield guid, example
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guid += 1
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else:
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raise ValueError(f"Invalid config: {self.config.name}")
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data/devel.zip
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:633e8f535da8debcc17a4b6fb304de44238562bf2f589779cbf1799ffb6e9297
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size 116493
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data/test.zip
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:6db691187c9be334faabab483b333f39576a17c12387c9295c929daba4da6a92
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size 164039
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data/train.zip
ADDED
@@ -0,0 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:ee6ef5e0b48a7fe067c6c04dc27bafb1e7c14843bce4aecb93f884be4508fb56
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size 355702
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