gabrielaltay commited on
Commit
339f827
1 Parent(s): ab2f676

fix parsing imports

Browse files
Files changed (1) hide show
  1. bionlp_st_2011_ge.py +6 -3
bionlp_st_2011_ge.py CHANGED
@@ -21,6 +21,9 @@ import datasets
21
  from .bigbiohub import kb_features
22
  from .bigbiohub import BigBioConfig
23
  from .bigbiohub import Tasks
 
 
 
24
 
25
  _DATASETNAME = "bionlp_st_2011_ge"
26
  _DISPLAYNAME = "BioNLP 2011 GE"
@@ -248,14 +251,14 @@ class bionlp_st_2011_ge(datasets.GeneratorBasedBuilder):
248
  if self.config.schema == "source":
249
  txt_files = list(data_files.glob("*txt"))
250
  for guid, txt_file in enumerate(txt_files):
251
- example = parsing.parse_brat_file(txt_file)
252
  example["id"] = str(guid)
253
  yield guid, example
254
  elif self.config.schema == "bigbio_kb":
255
  txt_files = list(data_files.glob("*txt"))
256
  for guid, txt_file in enumerate(txt_files):
257
- example = parsing.brat_parse_to_bigbio_kb(
258
- parsing.parse_brat_file(txt_file)
259
  )
260
  example = self._standardize_arguments_roles(example)
261
  example["id"] = str(guid)
 
21
  from .bigbiohub import kb_features
22
  from .bigbiohub import BigBioConfig
23
  from .bigbiohub import Tasks
24
+ from .bigbiohub import parse_brat_file
25
+ from .bigbiohub import brat_parse_to_bigbio_kb
26
+
27
 
28
  _DATASETNAME = "bionlp_st_2011_ge"
29
  _DISPLAYNAME = "BioNLP 2011 GE"
 
251
  if self.config.schema == "source":
252
  txt_files = list(data_files.glob("*txt"))
253
  for guid, txt_file in enumerate(txt_files):
254
+ example = parse_brat_file(txt_file)
255
  example["id"] = str(guid)
256
  yield guid, example
257
  elif self.config.schema == "bigbio_kb":
258
  txt_files = list(data_files.glob("*txt"))
259
  for guid, txt_file in enumerate(txt_files):
260
+ example = brat_parse_to_bigbio_kb(
261
+ parse_brat_file(txt_file)
262
  )
263
  example = self._standardize_arguments_roles(example)
264
  example["id"] = str(guid)