albertvillanova HF staff commited on
Commit
d42e878
1 Parent(s): 37e51f3
Files changed (1) hide show
  1. bionlp_st_2011_epi.py +6 -6
bionlp_st_2011_epi.py CHANGED
@@ -32,7 +32,7 @@ _DISPLAYNAME = "BioNLP 2011 EPI"
32
  _SOURCE_VIEW_NAME = "source"
33
  _UNIFIED_VIEW_NAME = "bigbio"
34
 
35
- _LANGUAGES = ['English']
36
  _PUBMED = True
37
  _LOCAL = False
38
  _CITATION = """\
@@ -59,7 +59,7 @@ of BioNLP Shared Task 2011.
59
 
60
  _HOMEPAGE = "https://github.com/openbiocorpora/bionlp-st-2011-epi"
61
 
62
- _LICENSE = 'GENIA Project License for Annotated Corpora'
63
 
64
  _URLs = {
65
  "train": "data/train.zip",
@@ -207,7 +207,9 @@ class bionlp_st_2011_epi(datasets.GeneratorBasedBuilder):
207
  ),
208
  datasets.SplitGenerator(
209
  name=datasets.Split.VALIDATION,
210
- gen_kwargs={"data_files": dl_manager.iter_files(data_files["validation"])},
 
 
211
  ),
212
  datasets.SplitGenerator(
213
  name=datasets.Split.TEST,
@@ -232,9 +234,7 @@ class bionlp_st_2011_epi(datasets.GeneratorBasedBuilder):
232
  txt_file = Path(data_file)
233
  if txt_file.suffix != ".txt":
234
  continue
235
- example = brat_parse_to_bigbio_kb(
236
- parse_brat_file(txt_file)
237
- )
238
  example["id"] = str(guid)
239
  yield guid, example
240
  guid += 1
 
32
  _SOURCE_VIEW_NAME = "source"
33
  _UNIFIED_VIEW_NAME = "bigbio"
34
 
35
+ _LANGUAGES = ["English"]
36
  _PUBMED = True
37
  _LOCAL = False
38
  _CITATION = """\
 
59
 
60
  _HOMEPAGE = "https://github.com/openbiocorpora/bionlp-st-2011-epi"
61
 
62
+ _LICENSE = "GENIA Project License for Annotated Corpora"
63
 
64
  _URLs = {
65
  "train": "data/train.zip",
 
207
  ),
208
  datasets.SplitGenerator(
209
  name=datasets.Split.VALIDATION,
210
+ gen_kwargs={
211
+ "data_files": dl_manager.iter_files(data_files["validation"])
212
+ },
213
  ),
214
  datasets.SplitGenerator(
215
  name=datasets.Split.TEST,
 
234
  txt_file = Path(data_file)
235
  if txt_file.suffix != ".txt":
236
  continue
237
+ example = brat_parse_to_bigbio_kb(parse_brat_file(txt_file))
 
 
238
  example["id"] = str(guid)
239
  yield guid, example
240
  guid += 1