gabrielaltay albertvillanova HF staff commited on
Commit
04f72d2
1 Parent(s): 8bdee57

Support streaming (#1)

Browse files

- Support streaming (e11de9c2fd3b6d1a3562970bb743ffe84cb4f5b7)


Co-authored-by: Albert Villanova <albertvillanova@users.noreply.huggingface.co>

Files changed (1) hide show
  1. bioinfer.py +7 -8
bioinfer.py CHANGED
@@ -68,7 +68,10 @@ _HOMEPAGE = "https://github.com/metalrt/ppi-dataset"
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  _LICENSE = 'Creative Commons Attribution 2.0 Generic'
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  _URLS = {
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- _DATASETNAME: "https://github.com/metalrt/ppi-dataset/archive/refs/heads/master.zip",
 
 
 
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  }
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  _SUPPORTED_TASKS = [Tasks.RELATION_EXTRACTION, Tasks.NAMED_ENTITY_RECOGNITION]
@@ -157,23 +160,19 @@ class BioinferDataset(datasets.GeneratorBasedBuilder):
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  def _split_generators(self, dl_manager) -> List[datasets.SplitGenerator]:
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  """Returns SplitGenerators."""
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  urls = _URLS[_DATASETNAME]
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- data_dir = dl_manager.download_and_extract(urls)
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
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  gen_kwargs={
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- "filepath": os.path.join(
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- data_dir, "ppi-dataset-master/csv_output/BioInfer-train.xml"
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- ),
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  "split": "train",
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  },
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  ),
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  datasets.SplitGenerator(
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  name=datasets.Split.TEST,
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  gen_kwargs={
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- "filepath": os.path.join(
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- data_dir, "ppi-dataset-master/csv_output/BioInfer-test.xml"
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- ),
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  "split": "test",
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  },
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  ),
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  _LICENSE = 'Creative Commons Attribution 2.0 Generic'
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  _URLS = {
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+ _DATASETNAME: {
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+ "train": "https://github.com/metalrt/ppi-dataset/raw/master/csv_output/BioInfer-train.xml",
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+ "test": "https://github.com/metalrt/ppi-dataset/raw/master/csv_output/BioInfer-test.xml",
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+ }
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  }
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  _SUPPORTED_TASKS = [Tasks.RELATION_EXTRACTION, Tasks.NAMED_ENTITY_RECOGNITION]
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  def _split_generators(self, dl_manager) -> List[datasets.SplitGenerator]:
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  """Returns SplitGenerators."""
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  urls = _URLS[_DATASETNAME]
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+ data_dir = dl_manager.download(urls)
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  return [
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  datasets.SplitGenerator(
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  name=datasets.Split.TRAIN,
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  gen_kwargs={
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+ "filepath": data_dir["train"],
 
 
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  "split": "train",
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  },
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  ),
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  datasets.SplitGenerator(
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  name=datasets.Split.TEST,
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  gen_kwargs={
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+ "filepath": data_dir["test"],
 
 
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  "split": "test",
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  },
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  ),