Fix style

ask_a_patient.py

@@ -17,14 +17,12 @@ import os
 
 import datasets
 
-from .bigbiohub import kb_features
-from .bigbiohub import BigBioConfig
-from .bigbiohub import Tasks
+from .bigbiohub import BigBioConfig, Tasks, kb_features
 
 _DATASETNAME = "ask_a_patient"
 _DISPLAYNAME = "AskAPatient"
 
-_LANGUAGES = ['English']
+_LANGUAGES = ["English"]
 _PUBMED = True
 _LOCAL = False
 _CITATION = """
@@ -50,7 +48,7 @@ mapped to how they are formally written in medical ontologies (SNOMED-CT and AMT
 
 _HOMEPAGE = "https://zenodo.org/record/55013"
 
-_LICENSE = 'Creative Commons Attribution 4.0 International'
+_LICENSE = "Creative Commons Attribution 4.0 International"
 
 _URLs = "https://zenodo.org/record/55013/files/datasets.zip"
 
@@ -124,10 +122,10 @@ class AskAPatient(datasets.GeneratorBasedBuilder):
     def _generate_examples(self, filepath, split_id):
         with open(filepath, "r", encoding="latin-1") as f:
             for i, line in enumerate(f):
-                id = f"{split_id}_{i}"
+                uid = f"{split_id}_{i}"
                 cui, medical_concept, social_media_text = line.strip().split("\t")
                 if self.config.schema == "source":
-                    yield id, {
+                    yield uid, {
                         "cui": cui,
                         "medical_concept": medical_concept,
                         "social_media_text": social_media_text,
@@ -135,12 +133,12 @@ class AskAPatient(datasets.GeneratorBasedBuilder):
                 elif self.config.schema == "bigbio_kb":
                     text_type = "social_media_text"
                     offset = (0, len(social_media_text))
-                    yield id, {
-                        "id": id,
-                        "document_id": id,
+                    yield uid, {
+                        "id": uid,
+                        "document_id": uid,
                         "passages": [
                             {
-                                "id": f"{id}_passage",
+                                "id": f"{uid}_passage",
                                 "type": text_type,
                                 "text": [social_media_text],
                                 "offsets": [offset],
@@ -148,13 +146,11 @@ class AskAPatient(datasets.GeneratorBasedBuilder):
                         ],
                         "entities": [
                             {
-                                "id": f"{id}_entity",
+                                "id": f"{uid}_entity",
                                 "type": text_type,
                                 "text": [social_media_text],
                                 "offsets": [offset],
-                                "normalized": [
-                                    {"db_name": "SNOMED-CT|AMT", "db_id": cui}
-                                ],
+                                "normalized": [{"db_name": "SNOMED-CT|AMT", "db_id": cui}],
                             }
                         ],
                         "events": [],