gabrielaltay commited on
Commit
1a0d6b8
1 Parent(s): 33779d3

fix parse_brat_file import (#2)

Browse files

- fix parse_brat_file import (157597131f4739a68fa1ed1f2d34af034888cf97)

Files changed (1) hide show
  1. an_em.py +4 -2
an_em.py CHANGED
@@ -29,6 +29,8 @@ import datasets
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  from .bigbiohub import kb_features
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  from .bigbiohub import BigBioConfig
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  from .bigbiohub import Tasks
 
 
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  _LANGUAGES = ['English']
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  _PUBMED = True
@@ -205,7 +207,7 @@ class AnEMDataset(datasets.GeneratorBasedBuilder):
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  # Use brat text files and consider files in the provided split list
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  if (file.suffix != ".txt") or (file.stem not in split_list):
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  continue
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- brat_parsed = parse.parse_brat_file(file)
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  source_example = self._brat_to_source(file, brat_parsed)
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  yield source_example["document_id"], source_example
@@ -216,7 +218,7 @@ class AnEMDataset(datasets.GeneratorBasedBuilder):
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  # Use brat text files and consider files in the provided split list
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  if (file.suffix != ".txt") or (file.stem not in split_list):
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  continue
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- brat_parsed = parse.parse_brat_file(file)
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  bigbio_kb_example = parse.brat_parse_to_bigbio_kb(brat_parsed)
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  bigbio_kb_example["id"] = bigbio_kb_example["document_id"]
 
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  from .bigbiohub import kb_features
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  from .bigbiohub import BigBioConfig
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  from .bigbiohub import Tasks
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+ from .bigbiohub import parse_brat_file
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+
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  _LANGUAGES = ['English']
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  _PUBMED = True
 
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  # Use brat text files and consider files in the provided split list
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  if (file.suffix != ".txt") or (file.stem not in split_list):
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  continue
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+ brat_parsed = parse_brat_file(file)
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  source_example = self._brat_to_source(file, brat_parsed)
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  yield source_example["document_id"], source_example
 
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  # Use brat text files and consider files in the provided split list
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  if (file.suffix != ".txt") or (file.stem not in split_list):
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  continue
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+ brat_parsed = parse_brat_file(file)
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  bigbio_kb_example = parse.brat_parse_to_bigbio_kb(brat_parsed)
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  bigbio_kb_example["id"] = bigbio_kb_example["document_id"]