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Datasets:
angelolab
/
ark_example

Tasks:
Image Segmentation
Sub-tasks:
instance-segmentation
Size:
n<1K
Tags:
MIBI
Multiplexed-Imaging
License:
Dataset card Files Community
17
srivarra commited on
Commit
9fd97a0
•
1 Parent(s): d59b409

small changes

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Files changed (1) hide show
  1. ark_example.py +10 -9
ark_example.py CHANGED
@@ -44,24 +44,25 @@ _LICENSE = "https://github.com/angelolab/ark-analysis/blob/main/LICENSE"
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  # TODO: Add link to the official dataset URLs here
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  # The HuggingFace Datasets library doesn't host the datasets but only points to the original files.
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  # This can be an arbitrary nested dict/list of URLs (see below in `_split_generators` method)
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- _URL_REPO = "https://huggingface.co/datasets/angelolab/ark_example/"
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- _URLS = {
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- "input_data": f"{_URL_REPO}/data/input_data.zip",
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- "segmentation/cell_table": f"{_URL_REPO}/data/segmentation/cell_table.zip",
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- "segmentation/deepcell_output": f"{_URL_REPO}/data/segmentation/deepcell_output.zip",
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  }
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  _URL_DATASET_CONFIGS = {
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- "nb1": {"input_data": _URLS["input_data"]},
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  "nb2": {
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- "input_data": _URLS["input_data"],
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- "segmentation/cell_table": _URLS["segmentation/cell_table"],
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- "segmentation/deepcell_output": _URLS["segmentation/deepcell_output"],
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  },
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  }
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  """
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  Dataset Fov renaming:
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  # TODO: Add link to the official dataset URLs here
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  # The HuggingFace Datasets library doesn't host the datasets but only points to the original files.
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  # This can be an arbitrary nested dict/list of URLs (see below in `_split_generators` method)
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+ # _URL_REPO = "https://huggingface.co/datasets/angelolab/ark_example"
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+ _URL_DATA = {
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+ "input_data": "data/input_data.zip",
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+ "segmentation/cell_table": "data/segmentation/cell_table.zip",
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+ "segmentation/deepcell_output": "data/segmentation/deepcell_output.zip",
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  }
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  _URL_DATASET_CONFIGS = {
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+ "nb1": {"input_data": _URL_DATA["input_data"]},
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  "nb2": {
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+ "input_data": _URL_DATA["input_data"],
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+ "segmentation/cell_table": _URL_DATA["segmentation/cell_table"],
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+ "segmentation/deepcell_output": _URL_DATA["segmentation/deepcell_output"],
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  },
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  }
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+
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  """
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  Dataset Fov renaming:
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