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Datasets:
angelolab
/
ark_example

Tasks:
Image Segmentation
Sub-tasks:
instance-segmentation
Size Categories:
n<1K
Annotations Creators:
no-annotation
Source Datasets:
original
Tags:
MIBI
Multiplexed-Imaging
License:
Dataset card Files Community
17
srivarra commited on
Commit
8affc79
•
1 Parent(s): b6a1c98

Add a Smaller FOV to the Example Dataset (#8)

Browse files

- dataset with cropped fov0, compressed channel tiffs also (3ce2e0ef9e86e9a2a5778aa78a7c6cd094503f3f)
- removed .DS_Store and __MACOSX (9066db22d65a2e4f92bf98b03e67db3c3e35d57d)
- merge main (5fdb2b51e0fd8fe97f7850b2b17a3f64521c8ad2)
- updated cell json file (fb3be104b2a120aa819d89c757c83a91ac83f22c)
- updated version (2dd6b47fff323d00d42efbdd32c9ddfa6242437f)
- updated image data (9e292156f0087ff9f78470d9026bae5027ecb743)
- fixed fov4, removed modified channels (b0180f9c2deaeb6b425f9f75cb94d87d0d2584e2)
- removed .DS_Store and __MACOSX (8053247fcd144a87aa1fb3eac0691dc186843281)
- updated cell output (61218d6b1dfe0227b4ec457ab4b8b65bc16582f1)
- updated pixel output (16b326e562bf182e6ed0d1b260171ed0b85968e8)
- updated cell output (again) (6d8d0f11816363952b50b672bfca84c755ec4df0)
- updated cell output (again x2) (4ed8d5570d3a9eff7c72bc949e68589bddc3f5b2)
- removed .DS_Store and __MACOSX (8c33fad7ca34b0513edeafec101e356550223afd)
- removed .DS_Store and __MACOSX, add missing pixel_som file (05a5b519be1f2c7041416e5991345cf8fbcb7eaa)
- updated cell_output_dir names (04aa699241b75fb04a0cabeb0e3944659349499c)

Files changed (8) hide show
  1. ark_example.py +1 -1
  2. data/image_data.zip +2 -2
  3. data/pixie/example_cell_output_dir.zip +2 -2
  4. data/pixie/example_pixel_output_dir.zip +2 -2
  5. data/post_clustering.zip +2 -2
  6. data/segmentation/cell_table.zip +2 -2
  7. data/segmentation/deepcell_output.zip +2 -2
  8. data/spatial_analysis/spatial_lda.zip +2 -2
ark_example.py CHANGED
@@ -117,7 +117,7 @@ _URL_DATASET_CONFIGS = {
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  class ArkExample(datasets.GeneratorBasedBuilder):
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  """The Dataset consists of 11 FOVs"""
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- VERSION = datasets.Version("0.0.4")
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  # You will be able to load one or the other configurations in the following list with
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  BUILDER_CONFIGS = [
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  class ArkExample(datasets.GeneratorBasedBuilder):
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  """The Dataset consists of 11 FOVs"""
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+ VERSION = datasets.Version("0.0.5")
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  # You will be able to load one or the other configurations in the following list with
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  BUILDER_CONFIGS = [
data/image_data.zip CHANGED
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data/pixie/example_cell_output_dir.zip CHANGED
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data/pixie/example_pixel_output_dir.zip CHANGED
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data/post_clustering.zip CHANGED
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data/segmentation/cell_table.zip CHANGED
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data/segmentation/deepcell_output.zip CHANGED
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data/spatial_analysis/spatial_lda.zip CHANGED
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