srivarra commited on
Commit
3d4387e
1 Parent(s): 56f4643

added post-clustering files

Browse files
Files changed (2) hide show
  1. ark_example.py +2 -9
  2. data/post_clustering.zip +3 -0
ark_example.py CHANGED
@@ -33,7 +33,6 @@ TMA24_R9C1 -> fov10
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  """
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- from ensurepip import version
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  import datasets
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  import pathlib
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@@ -66,6 +65,7 @@ _URL_DATA = {
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  "example_pixel_output_dir": "./data/pixie/example_pixel_output_dir.zip",
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  "example_cell_output_dir": "./data/pixie/example_cell_output_dir.zip",
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  "spatial_lda": "./data/spatial_analysis/spatial_lda.zip",
 
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  }
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  _URL_DATASET_CONFIGS = {
@@ -108,6 +108,7 @@ _URL_DATASET_CONFIGS = {
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  "image_data": _URL_DATA["image_data"],
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  "cell_table": _URL_DATA["cell_table"],
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  "deepcell_output": _URL_DATA["deepcell_output"],
 
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  }
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  }
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@@ -118,14 +119,6 @@ class ArkExample(datasets.GeneratorBasedBuilder):
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  VERSION = datasets.Version("0.0.4")
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- # This is an example of a dataset with multiple configurations.
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- # If you don't want/need to define several sub-sets in your dataset,
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- # just remove the BUILDER_CONFIG_CLASS and the BUILDER_CONFIGS attributes.
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-
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- # If you need to make complex sub-parts in the datasets with configurable options
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- # You can create your own builder configuration class to store attribute, inheriting from datasets.BuilderConfig
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- # BUILDER_CONFIG_CLASS = MyBuilderConfig
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-
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  # You will be able to load one or the other configurations in the following list with
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  BUILDER_CONFIGS = [
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  datasets.BuilderConfig(
 
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  """
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  import datasets
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  import pathlib
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  "example_pixel_output_dir": "./data/pixie/example_pixel_output_dir.zip",
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  "example_cell_output_dir": "./data/pixie/example_cell_output_dir.zip",
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  "spatial_lda": "./data/spatial_analysis/spatial_lda.zip",
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+ "post_clustering": "./data/post_clustering.zip"
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  }
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  _URL_DATASET_CONFIGS = {
 
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  "image_data": _URL_DATA["image_data"],
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  "cell_table": _URL_DATA["cell_table"],
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  "deepcell_output": _URL_DATA["deepcell_output"],
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+ "post_clustering": _URL_DATA["post_clustering"],
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  }
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  }
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  VERSION = datasets.Version("0.0.4")
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  # You will be able to load one or the other configurations in the following list with
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  BUILDER_CONFIGS = [
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  datasets.BuilderConfig(
data/post_clustering.zip ADDED
@@ -0,0 +1,3 @@
 
 
 
 
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+ version https://git-lfs.github.com/spec/v1
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+ oid sha256:7a606bc9dfeee018dea5e94eaf022e9023db154d41a775471f4ded439216cbbf
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+ size 9719104