andrewsleader commited on
Commit
ee984cc
1 Parent(s): 68066ad

Update README.md

Browse files
Files changed (1) hide show
  1. README.md +194 -3
README.md CHANGED
@@ -1,3 +1,194 @@
1
- ---
2
- license: cc-by-nc-4.0
3
- ---
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ---
2
+ license: cc-by-nc-4.0
3
+ language:
4
+ - en
5
+ tags:
6
+ - code
7
+ pretty_name: README
8
+ ---
9
+ <!-- # TGB -->
10
+ ![TGB logo](imgs/logo.png)
11
+
12
+ **Temporal Graph Benchmark for Machine Learning on Temporal Graphs** (NeurIPS 2023 Datasets and Benchmarks Track)
13
+ <h4>
14
+ <a href="https://arxiv.org/abs/2307.01026"><img src="https://img.shields.io/badge/arXiv-pdf-yellowgreen"></a>
15
+ <a href="https://pypi.org/project/py-tgb/"><img src="https://img.shields.io/pypi/v/py-tgb.svg?color=brightgreen"></a>
16
+ <a href="https://tgb.complexdatalab.com/"><img src="https://img.shields.io/badge/website-blue"></a>
17
+ <a href="https://docs.tgb.complexdatalab.com/"><img src="https://img.shields.io/badge/docs-orange"></a>
18
+ </h4>
19
+
20
+
21
+ Overview of the Temporal Graph Benchmark (TGB) pipeline:
22
+ - TGB includes large-scale and realistic datasets from five different domains with both dynamic link prediction and node property prediction tasks.
23
+ - TGB automatically downloads datasets and processes them into `numpy`, `PyTorch` and `PyG compatible TemporalData` formats.
24
+ - Novel TG models can be easily evaluated on TGB datasets via reproducible and realistic evaluation protocols.
25
+ - TGB provides public and online leaderboards to track recent developments in temporal graph learning domain.
26
+
27
+ ![TGB dataloading and evaluation pipeline](imgs/pipeline.png)
28
+
29
+ **To submit to [TGB leaderboard](https://tgb.complexdatalab.com/), please fill in this [google form](https://forms.gle/SEsXvN1QHo9tSFwx9)**
30
+
31
+ **See all version differences and update notes [here](https://tgb.complexdatalab.com/docs/update/)**
32
+
33
+ ### Announcements
34
+
35
+ **Excited to announce TGX, a companion package for analyzing temporal graphs in WSDM 2024 Demo Track**
36
+
37
+ TGX supports all TGB datasets and provides numerous temporal graph visualization plots and statistics out of the box. See our paper: [Temporal Graph Analysis with TGX](https://arxiv.org/abs/2402.03651) and [TGX website](https://complexdata-mila.github.io/TGX/).
38
+
39
+ **Excited to announce that TGB has been accepted to NeurIPS 2023 Datasets and Benchmarks Track**
40
+
41
+ Thanks to everyone for your help in improving TGB! we will continue to improve TGB based on your feedback and suggestions.
42
+
43
+ **Please update to version `0.9.2`**
44
+
45
+ #### version `0.9.2`
46
+
47
+ Update the fix for `tgbl-flight` where now the unix timestamps are provided directly in the dataset. If you had issues with `tgbl-flight`, please remove `TGB/tgb/datasets/tgbl_flight`and redownload the dataset for a clean install
48
+
49
+
50
+
51
+ #### version `0.9.1`
52
+
53
+ Fixed an issue for `tgbl-flight` where the timestamp conversion is incorrect due to time zone differences. If you had issues with `tgbl-flight` before, please update your package.
54
+
55
+
56
+ #### version `0.9.0`
57
+
58
+ Added the large `tgbn-token` dataset with 72 million edges to the `nodeproppred` dataset.
59
+
60
+ Fixed errors in `tgbl-coin` and `tgbl-flight` where a small set of edges are not sorted chronologically. Please update your dataset version for them to version 2 (will be prompted in terminal).
61
+
62
+
63
+ ### Pip Install
64
+
65
+ You can install TGB via [pip](https://pypi.org/project/py-tgb/). **Requires python >= 3.9**
66
+ ```
67
+ pip install py-tgb
68
+ ```
69
+
70
+ ### Links and Datasets
71
+
72
+ The project website can be found [here](https://tgb.complexdatalab.com/).
73
+
74
+ The API documentations can be found [here](https://shenyanghuang.github.io/TGB/).
75
+
76
+ all dataset download links can be found at [info.py](https://github.com/shenyangHuang/TGB/blob/main/tgb/utils/info.py)
77
+
78
+ TGB dataloader will also automatically download the dataset as well as the negative samples for the link property prediction datasets.
79
+
80
+ if website is unaccessible, please use [this link](https://tgb-website.pages.dev/) instead.
81
+
82
+
83
+ ### Running Example Methods
84
+
85
+ - For the dynamic link property prediction task, see the [`examples/linkproppred`](https://github.com/shenyangHuang/TGB/tree/main/examples/linkproppred) folder for example scripts to run TGN, DyRep and EdgeBank on TGB datasets.
86
+ - For the dynamic node property prediction task, see the [`examples/nodeproppred`](https://github.com/shenyangHuang/TGB/tree/main/examples/nodeproppred) folder for example scripts to run TGN, DyRep and EdgeBank on TGB datasets.
87
+ - For all other baselines, please see the [TGB_Baselines](https://github.com/fpour/TGB_Baselines) repo.
88
+
89
+ ### Acknowledgments
90
+ We thank the [OGB](https://ogb.stanford.edu/) team for their support throughout this project and sharing their website code for the construction of [TGB website](https://tgb.complexdatalab.com/).
91
+
92
+
93
+ ### Citation
94
+
95
+ If code or data from this repo is useful for your project, please consider citing our paper:
96
+ ```
97
+ @article{huang2023temporal,
98
+ title={Temporal graph benchmark for machine learning on temporal graphs},
99
+ author={Huang, Shenyang and Poursafaei, Farimah and Danovitch, Jacob and Fey, Matthias and Hu, Weihua and Rossi, Emanuele and Leskovec, Jure and Bronstein, Michael and Rabusseau, Guillaume and Rabbany, Reihaneh},
100
+ journal={Advances in Neural Information Processing Systems},
101
+ year={2023}
102
+ }
103
+ ```
104
+ <!--
105
+
106
+ ### Install dependency
107
+ Our implementation works with python >= 3.9 and can be installed as follows
108
+
109
+ 1. set up virtual environment (conda should work as well)
110
+ ```
111
+ python -m venv ~/tgb_env/
112
+ source ~/tgb_env/bin/activate
113
+ ```
114
+
115
+ 2. install external packages
116
+ ```
117
+ pip install pandas==1.5.3
118
+ pip install matplotlib==3.7.1
119
+ pip install clint==0.5.1
120
+ ```
121
+
122
+ install Pytorch and PyG dependencies (needed to run the examples)
123
+ ```
124
+ pip install torch==2.0.0 --index-url https://download.pytorch.org/whl/cu117
125
+ pip install torch_geometric==2.3.0
126
+ pip install pyg_lib torch_scatter torch_sparse torch_cluster torch_spline_conv -f https://data.pyg.org/whl/torch-2.0.0+cu117.html
127
+ ```
128
+
129
+ 3. install local dependencies under root directory `/TGB`
130
+ ```
131
+ pip install -e .
132
+ ```
133
+
134
+
135
+ ### Instruction for tracking new documentation and running mkdocs locally
136
+
137
+ 1. first run the mkdocs server locally in your terminal
138
+ ```
139
+ mkdocs serve
140
+ ```
141
+
142
+ 2. go to the local hosted web address similar to
143
+ ```
144
+ [14:18:13] Browser connected: http://127.0.0.1:8000/
145
+ ```
146
+
147
+ Example: to track documentation of a new hi.py file in tgb/edgeregression/hi.py
148
+
149
+
150
+ 3. create docs/api/tgb.hi.md and add the following
151
+ ```
152
+ # `tgb.edgeregression`
153
+
154
+ ::: tgb.edgeregression.hi
155
+ ```
156
+
157
+ 4. edit mkdocs.yml
158
+ ```
159
+ nav:
160
+ - Overview: index.md
161
+ - About: about.md
162
+ - API:
163
+ other *.md files
164
+ - tgb.edgeregression: api/tgb.hi.md
165
+ ```
166
+
167
+ ### Creating new branch ###
168
+ ```
169
+ git fetch origin
170
+
171
+ git checkout -b test origin/test
172
+ ```
173
+
174
+ ### dependencies for mkdocs (documentation)
175
+ ```
176
+ pip install mkdocs
177
+ pip install mkdocs-material
178
+ pip install mkdocstrings-python
179
+ pip install mkdocs-jupyter
180
+ pip install notebook
181
+ ```
182
+
183
+
184
+ ### full dependency list
185
+ Our implementation works with python >= 3.9 and has the following dependencies
186
+ ```
187
+ pytorch == 2.0.0
188
+ torch-geometric == 2.3.0
189
+ torch-scatter==2.1.1
190
+ torch-sparse==0.6.17
191
+ torch-spline-conv==1.2.2
192
+ pandas==1.5.3
193
+ clint==0.5.1
194
+ ``` -->