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add raw edge files

.gitattributes CHANGED
@@ -56,3 +56,6 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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  extra/CTD_exposure_events.tsv filter=lfs diff=lfs merge=lfs -text
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  node/CTD_chemicals.tsv filter=lfs diff=lfs merge=lfs -text
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  node/CTD_genes.tsv filter=lfs diff=lfs merge=lfs -text
 
 
 
 
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  extra/CTD_exposure_events.tsv filter=lfs diff=lfs merge=lfs -text
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  node/CTD_chemicals.tsv filter=lfs diff=lfs merge=lfs -text
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  node/CTD_genes.tsv filter=lfs diff=lfs merge=lfs -text
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+ edge/CTD_chem_gene_ixns.tsv filter=lfs diff=lfs merge=lfs -text
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+ edge/CTD_chem_pheno_ixns.tsv filter=lfs diff=lfs merge=lfs -text
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+ edge/CTD_chemicals_diseases.tsv filter=lfs diff=lfs merge=lfs -text
edge/CTD_chem_gene_ixn_types.tsv ADDED
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+ # The Comparative Toxicogenomics Database (CTD) - http://ctdbase.org/
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+ # Copyright 2002-2012 MDI Biological Laboratory. All rights reserved.
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+ # Copyright 2012-2016 MDI Biological Laboratory & NC State University. All rights reserved.
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+ #
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+ # Use is subject to the terms set forth at http://ctdbase.org/about/legal.jsp
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+ # These terms include:
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+ #
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+ # 1. All forms of publication that use or rely on CTD data (e.g.,
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+ # web sites, research papers, databases, applications, products, etc.)
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+ # must cite CTD.
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+ # Citation guidelines: http://ctdbase.org/about/publications/#citing
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+ #
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+ # 2. All electronic or online applications must include hyperlinks from
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+ # contexts that use CTD data to the applicable CTD data pages.
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+ # Linking instructions: http://ctdbase.org/help/linking.jsp
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+ #
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+ # 3. You must notify CTD and describe how you are using the our data:
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+ # http://ctdbase.org/help/contact.go
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+ #
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+ # More information: http://ctdbase.org/downloads/
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+ #
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+ # Report created: Fri Jul 06 11:10:38 EDT 2012
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+ #
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+ # Fields:
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+ # TypeName Code Description ParentCode
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+ #
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+ abundance abu The abundance of a chemical (if chemical synthesis is not known).
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+ activity act An elemental function of a molecule.
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+ binding b A molecular interaction.
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+ cotreatment w Involving the use of two or more chemicals simultaneously.
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+ expression exp The expression of a gene product.
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+ folding fol The bending and positioning of a molecule to achieve conformational integrity.
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+ localization loc Part of the cell where a molecule resides.
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+ metabolic processing met The biochemical alteration of a molecule's structure (does not include changes in expression, stability, folding, localization, splicing, or transport).
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+ acetylation ace The addition of an acetyl group. met
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+ acylation acy The addition of an acyl group. met
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+ alkylation alk The addition of an alkyl group. met
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+ amination ami The addition of an amine group. met
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+ carbamoylation car The addition of a carbamoyl group. met
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+ carboxylation cox The addition of a carboxyl group. met
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+ chemical synthesis csy A biochemical event resulting in a new chemical product. met
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+ degradation deg Catabolism or breakdown. met
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+ cleavage clv The processing or splitting of a molecule, not necessarily leading to the destruction of the molecule. deg
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+ hydrolysis hyd The splitting of a molecule via the specific use of water. clv
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+ ethylation eth The addition of an ethyl group. met
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+ glutathionylation glt The addition of a glutathione group. met
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+ glycation gyc The non-enzymatic addition of a sugar. met
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+ glycosylation gly The addition of a sugar group. met
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+ glucuronidation glc The addition of a sugar group to form a glucuronide, typically part of an inactivating or detoxifying reaction. gly
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+ N-linked glycosylation ngl The addition of a sugar group to an amide nitrogen. gly
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+ O-linked glycosylation ogl The addition of a sugar group to a hydroxyl group. gly
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+ hydroxylation hdx The addition of a hydroxy group. met
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+ lipidation lip The addition of a lipid group. met
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+ farnesylation far The addition of a farnesyl group. lip
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+ geranoylation ger The addition of a geranoyl group. lip
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+ myristoylation myr The addition of a myristoyl group. lip
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+ palmitoylation pal The addition of a palmitoyl group. lip
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+ prenylation pre The addition of a prenyl group. lip
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+ methylation myl The addition of a methyl group. met
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+ nitrosation nit The addition of a nitroso or nitrosyl group. met
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+ nucleotidylation nuc The addition of a nucleotidyl group. met
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+ oxidation oxd The loss of electrons. met
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+ phosphorylation pho The addition of a phosphate group. met
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+ reduction red The gain of electrons. met
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+ ribosylation rib The addition of a ribosyl group. met
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+ ADP-ribosylation arb The addition of a ADP-ribosyl group. rib
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+ sulfation sul The addition of a sulfate group. met
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+ sumoylation sum The addition of a SUMO group. met
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+ ubiquitination ubq The addition of an ubiquitin group. met
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+ mutagenesis mut The genetic alteration of a gene product.
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+ reaction rxn Any general biochemical or molecular event.
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+ response to substance rec Resistance or sensitivity to a substance.
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+ splicing spl The removal of introns to generate mRNA.
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+ stability sta Overall molecular integrity.
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+ transport trt The movement of a molecule into or out of a cell.
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+ secretion sec The movement of a molecule out of a cell (by less specific means than export). trt
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+ export ext The movement of a molecule out of a cell (by more specific means than secretion). sec
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+ uptake upt The movement of a molecule into a cell (by less specific means than import). trt
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+ import imt The movement of a molecule into a cell (by more specific means than uptake). upt
edge/CTD_chem_gene_ixns.tsv ADDED
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edge/CTD_chem_pheno_ixns.tsv ADDED
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edge/CTD_chemicals_diseases.tsv ADDED
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edge/CTD_genes_diseases.tsv ADDED
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edge/CTD_genes_pathways.tsv ADDED
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