Initial Commit

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+data_cna.txt filter=lfs diff=lfs merge=lfs -text
+data_log2_cna.txt filter=lfs diff=lfs merge=lfs -text
+data_methylation_hm27_hm450_merged.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt filter=lfs diff=lfs merge=lfs -text
+data_mrna_seq_v2_rsem.txt filter=lfs diff=lfs merge=lfs -text
+data_mutations.txt filter=lfs diff=lfs merge=lfs -text

LICENSE

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+TCGA data are available under Broad Institute GDAC TCGA Analysis Pipeline License. The Cancer Genome Atlas Consortium is pleased to provide the research community with preliminary data prior to publication. Users are requested to carefully consider that these data are preliminary and have yet to be validated. Researchers are warned that the preliminary data have a significant uncertainty, are likely to change, and should be used with caution.

README.md

@@ -1,3 +1,28 @@
----
-license: cc-by-nc-sa-4.0
----
+## Improving PanCancer Atlas Data: (transformation steps for the new data types being added)
+
+### The Timeline/Treatment data:
+
+**Data Source**
+- GDAC Firehose: https://gdac.broadinstitute.org/
+- File Used: `Merge_Clinical.Level_1.20160128` (clin.merged.txt) for each cancer type.
+
+**Data Transformation** 
+- The detailed transformation steps are listed in the Pull Request [here](https://github.com/cBioPortal/datahub/pull/1597)
+
+### The Genetic Ancestry data:
+
+
+**Data Source**
+- GDAC Firehose: https://gdc.cancer.gov/about-data/publications/CCG-AIM-2020
+- File Used: `Admixture_by_sample.txt` (Admix percent by sample) for each cancer type.
+
+
+### The Methylation data:
+
+**Data Source**
+- GDAC Firehose: https://gdc.cancer.gov/node/977
+- File Used: `jhu-usc.edu_PANCAN_HumanMethylation450.betaValue_whitelisted.tsv` (DNA methylation 450K only beta value data matrix) for each cancer type.
+
+**Data Transformation** 
+ - The detailed transformation steps are listed in the Pull Request [here](https://github.com/cBioPortal/datahub/pull/1597)
+ - The meta info for the Infinium Illumina 450k probes used for this profile is under the folder "probe_meta" "probe_450k_mapinfo_PQ.txt" is the original download from Illumina.

case_lists/cases_RNA_Seq_v2_mRNA.txt

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+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_rna_seq_v2_mrna
+case_list_name: Samples with mRNA data (RNA Seq V2)
+case_list_description: Samples with mRNA expression data (515 samples)
+case_list_category: all_cases_with_mrna_rnaseq_data
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-CR-7377-01	TCGA-H7-8502-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-CN-4737-01	TCGA-CQ-A4CA-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-CR-5243-01	TCGA-UF-A7JF-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-BB-7866-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-BB-7872-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-A4CB-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A6DI-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CQ-7069-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-BA-5557-01	TCGA-CV-7089-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-P3-A6T4-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CV-7183-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-4726-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-F7-A622-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7104-01	TCGA-D6-A6EN-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-BB-7864-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-5361-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-WA-A7H4-01	TCGA-CR-7397-01	TCGA-CQ-7072-01	TCGA-CR-7370-01	TCGA-RS-A6TP-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-4722-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-DQ-7589-01	TCGA-CN-A63V-01	TCGA-T2-A6X2-01	TCGA-CV-7415-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-7446-01	TCGA-CV-5440-01	TCGA-CV-7428-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-CV-A45R-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-CN-6995-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-HL-7533-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A8YP-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CQ-A4CD-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-P3-A6T6-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-UP-A6WW-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-CV-7423-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-CN-4734-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-CV-7411-01	TCGA-CR-6474-01	TCGA-MZ-A7D7-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CV-7433-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-4P-AA8J-01	TCGA-CV-7097-01	TCGA-CR-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case_lists/cases_all.txt

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+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_all
+case_list_name: All samples
+case_list_description: All samples (523 samples)
+case_list_category: all_cases_in_study
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-CN-4726-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CV-7432-01	TCGA-CQ-7064-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-CN-4737-01	TCGA-CQ-A4CA-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-BB-A5HU-01	TCGA-D6-A6EK-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-P3-A6SX-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-BB-7872-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-DQ-7593-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A8YP-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CQ-7069-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-H7-A6C5-01	TCGA-BA-5557-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-P3-A6T4-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-MT-A67G-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-IQ-A61K-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CQ-A4CD-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-6011-01	TCGA-H7-8502-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-F7-A622-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-D6-A74Q-01	TCGA-CV-7104-01	TCGA-UF-A7JC-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-BB-A6UM-01	TCGA-BB-7864-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-5361-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-CQ-A4CI-01	TCGA-BA-A6DF-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-WA-A7H4-01	TCGA-CR-7397-01	TCGA-CN-A640-01	TCGA-CQ-7072-01	TCGA-CR-7370-01	TCGA-RS-A6TP-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-4722-01	TCGA-CN-6021-01	TCGA-BA-A4IG-01	TCGA-P3-A6T3-01	TCGA-QK-A8ZA-01	TCGA-DQ-7589-01	TCGA-CN-A63V-01	TCGA-CV-7423-01	TCGA-CV-7415-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-UF-A718-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-7446-01	TCGA-CV-5440-01	TCGA-CV-7428-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-CV-A45R-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-CN-6995-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-HL-7533-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A6DI-01	TCGA-MZ-A7D7-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CV-7183-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-P3-A6T6-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-UP-A6WW-01	TCGA-UF-A7J9-01	TCGA-CN-4727-01	TCGA-T2-A6X2-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-IQ-A61L-01	TCGA-CN-4734-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-CV-7411-01	TCGA-CR-6474-01	TCGA-CQ-A4CB-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CV-7433-01	TCGA-CN-5360-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-CV-A45U-01	TCGA-CV-7097-01	TCGA-CR-5247-01	TCGA-F7-A623-01	TCGA-BA-A6DG-01	TCGA-UF-A7JF-01	TCGA-CQ-6219-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-DQ-7595-01	TCGA-CR-7389-01	TCGA-UF-A719-01	TCGA-CQ-7067-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-BB-7862-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CQ-7068-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-CR-5243-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-BB-7866-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-CR-7393-01	TCGA-HD-A6I0-01	TCGA-CV-7089-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-H7-8501-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-CV-7180-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-TN-A7HJ-01	TCGA-CR-7367-01	TCGA-F7-A620-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-CQ-6222-01	TCGA-BB-7871-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-CV-7409-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-4P-AA8J-01	TCGA-CN-4723-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-CN-A63T-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-F7-7848-01	TCGA-CN-4725-01	TCGA-CV-A6JZ-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-QK-AA3J-01	TCGA-CR-6487-01	TCGA-T2-A6WZ-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-F7-A61V-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-CV-A6JN-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-T2-A6X0-01	TCGA-HD-A634-01	TCGA-DQ-7594-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-DQ-7590-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-BB-7863-01	TCGA-CQ-7063-01	TCGA-HD-7917-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-P3-A6T2-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-D6-A6EN-01	TCGA-CN-5373-01	TCGA-HD-A633-01	TCGA-CR-7386-01	TCGA-CN-A63W-01	TCGA-CN-6010-01	TCGA-CN-A63U-01	TCGA-CV-7568-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-CR-7377-01	TCGA-CV-6954-01	TCGA-CV-6936-01	TCGA-BB-7861-01	TCGA-CR-7394-01	TCGA-CV-5431-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-CR-7398-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-BA-5152-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-P3-A6T7-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-BA-A4II-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-CN-A63Y-01	TCGA-BA-A6DE-01

case_lists/cases_cna.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_cna
+case_list_name: Samples with CNA data
+case_list_description: Samples with CNA data (517 samples)
+case_list_category: all_cases_with_cna_data
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-CR-7377-01	TCGA-H7-8502-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-CQ-7064-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-CN-4737-01	TCGA-CQ-A4CA-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-CR-5243-01	TCGA-D6-A6EK-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-BB-7866-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-BB-7872-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-A4CB-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A6DI-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CQ-7069-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-H7-A6C5-01	TCGA-BA-5557-01	TCGA-CV-7089-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-P3-A6T4-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-MT-A67G-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-IQ-A61K-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CV-7183-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-4726-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-F7-A622-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7104-01	TCGA-D6-A6EN-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-BB-7864-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-BA-A6DF-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-WA-A7H4-01	TCGA-CR-7397-01	TCGA-CN-A640-01	TCGA-CQ-7072-01	TCGA-CR-7370-01	TCGA-RS-A6TP-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-4722-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-DQ-7589-01	TCGA-CN-A63V-01	TCGA-T2-A6X2-01	TCGA-CV-7415-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-5440-01	TCGA-CV-7428-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-CV-A45R-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-CN-6995-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-HL-7533-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A8YP-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CQ-A4CD-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-P3-A6T6-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-UP-A6WW-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-CV-7423-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-IQ-A61L-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-CV-7411-01	TCGA-CR-6474-01	TCGA-MZ-A7D7-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CV-7433-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-4P-AA8J-01	TCGA-CV-7097-01	TCGA-CR-5247-01	TCGA-CN-4723-01	TCGA-BA-A6DG-01	TCGA-UF-A7JF-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-DQ-7595-01	TCGA-CR-7389-01	TCGA-CN-A63T-01	TCGA-CQ-7067-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-BB-7862-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CV-7432-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-BB-A5HU-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-P3-A6SX-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-CR-7393-01	TCGA-HD-A6I0-01	TCGA-CN-6011-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-CN-4725-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-CR-7398-01	TCGA-CR-7367-01	TCGA-F7-A620-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-BB-7871-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-CV-7409-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-CV-A45U-01	TCGA-F7-A623-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-UF-A719-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-BA-5152-01	TCGA-H7-8501-01	TCGA-CV-A6JZ-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-QK-AA3J-01	TCGA-CR-6487-01	TCGA-T2-A6WZ-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-F7-A61V-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-CV-A6JN-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-T2-A6X0-01	TCGA-HD-A634-01	TCGA-DQ-7594-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-DQ-7590-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-BB-7863-01	TCGA-CQ-7063-01	TCGA-HD-7917-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-UF-A7JC-01	TCGA-CN-5373-01	TCGA-HD-A633-01	TCGA-CR-7386-01	TCGA-BA-A4IG-01	TCGA-CN-6010-01	TCGA-UF-A718-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-P3-A6T2-01	TCGA-CV-6954-01	TCGA-CV-7180-01	TCGA-BB-7861-01	TCGA-CR-7394-01	TCGA-CV-5431-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-TN-A7HJ-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-F7-7848-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-P3-A6T7-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-CN-A63Y-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-A4II-01	TCGA-BA-A6DE-01

case_lists/cases_cnaseq.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_cnaseq
+case_list_name: Samples with mutation and CNA data
+case_list_description: Samples with mutation and CNA data (496 samples)
+case_list_category: all_cases_with_mutation_and_cna_data
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-P3-A6T2-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-CQ-7064-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-CN-4737-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-BB-A5HU-01	TCGA-D6-A6EK-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-A4CB-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A6DI-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CQ-7069-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-H7-A6C5-01	TCGA-BA-5557-01	TCGA-CV-7089-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-P3-A6T4-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-MT-A67G-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-IQ-A61K-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CV-7183-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-4726-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-F7-A622-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7104-01	TCGA-D6-A6EN-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-BA-A6DF-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-WA-A7H4-01	TCGA-CR-7397-01	TCGA-CN-A640-01	TCGA-CQ-7072-01	TCGA-CR-7370-01	TCGA-RS-A6TP-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-CN-A63V-01	TCGA-T2-A6X2-01	TCGA-CV-7415-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-5440-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-CV-A45R-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-CN-6995-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A8YP-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CQ-A4CD-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-P3-A6T6-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-UP-A6WW-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-CV-7423-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-IQ-A61L-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-CV-7411-01	TCGA-CR-6474-01	TCGA-MZ-A7D7-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CV-7433-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-4P-AA8J-01	TCGA-CV-A6JZ-01	TCGA-CR-5247-01	TCGA-CN-4723-01	TCGA-BA-A6DG-01	TCGA-UF-A7JF-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-CR-7389-01	TCGA-CN-A63T-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CV-7432-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-CR-5243-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-P3-A6SX-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-HD-A6I0-01	TCGA-CN-6011-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-CN-4725-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-CR-7398-01	TCGA-CR-7367-01	TCGA-F7-A620-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-CV-A45U-01	TCGA-F7-A623-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-UF-A719-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-BA-5152-01	TCGA-H7-8501-01	TCGA-CV-7097-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-QK-AA3J-01	TCGA-CR-6487-01	TCGA-T2-A6WZ-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-F7-A61V-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-CV-A6JN-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-T2-A6X0-01	TCGA-HD-A634-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-CQ-7063-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-UF-A7JC-01	TCGA-CN-5373-01	TCGA-HD-A633-01	TCGA-CR-7386-01	TCGA-BA-A4IG-01	TCGA-CN-6010-01	TCGA-UF-A718-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-CR-7377-01	TCGA-CV-6954-01	TCGA-CV-7180-01	TCGA-CR-7394-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-TN-A7HJ-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-F7-7848-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-P3-A6T7-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-CN-A63Y-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-A4II-01	TCGA-BA-A6DE-01

case_lists/cases_complete.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_3way_complete
+case_list_name: Complete samples
+case_list_description: Samples with mutation, CNA and expression data (488 samples)
+case_list_category: all_cases_with_mutation_and_cna_and_mrna_data
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-P3-A6T2-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-CN-4737-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-BB-A5HU-01	TCGA-D6-A6EK-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CN-6011-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-A4CB-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A6DI-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CQ-7069-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-BA-5557-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-P3-A6T4-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CV-7183-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-4726-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-F7-A622-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7416-01	TCGA-CV-7104-01	TCGA-D6-A6EN-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-WA-A7H4-01	TCGA-CR-7397-01	TCGA-CQ-7072-01	TCGA-CR-7370-01	TCGA-RS-A6TP-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-CN-A63V-01	TCGA-T2-A6X2-01	TCGA-CV-7415-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-5440-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-CV-A45R-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-CN-6995-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A8YP-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CQ-A4CD-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-P3-A6T6-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-UP-A6WW-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-CV-7423-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-CV-7411-01	TCGA-CR-6474-01	TCGA-MZ-A7D7-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CV-7433-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-4P-AA8J-01	TCGA-CV-A6JZ-01	TCGA-CR-5247-01	TCGA-CN-4723-01	TCGA-BA-A6DG-01	TCGA-UF-A7JF-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-CR-7389-01	TCGA-CN-A63T-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CV-7432-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-CR-5243-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-P3-A6SX-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-HD-A6I0-01	TCGA-CV-7089-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-CN-4725-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-CR-7398-01	TCGA-CR-7367-01	TCGA-F7-A620-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-CV-A45U-01	TCGA-F7-A623-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-UF-A719-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-BA-5152-01	TCGA-H7-8501-01	TCGA-CV-7097-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-QK-AA3J-01	TCGA-CR-6487-01	TCGA-T2-A6WZ-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-F7-A61V-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-CV-A6JN-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-T2-A6X0-01	TCGA-HD-A634-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-CQ-7063-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-UF-A7JC-01	TCGA-CN-5373-01	TCGA-HD-A633-01	TCGA-CR-7386-01	TCGA-BA-A4IG-01	TCGA-CN-6010-01	TCGA-UF-A718-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-CR-7377-01	TCGA-CV-6954-01	TCGA-CV-7180-01	TCGA-CR-7394-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-TN-A7HJ-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-F7-7848-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-P3-A6T7-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-A4II-01	TCGA-BA-A6DE-01

case_lists/cases_log2CNA.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_log2CNA
+case_list_name: Samples with log2 copy-number data
+case_list_description: Samples with log2 copy-number data (517 samples)
+case_list_category: all_cases_with_log2_cna_data
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-CR-7377-01	TCGA-H7-8502-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-CQ-7064-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-CN-4737-01	TCGA-CQ-A4CA-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-CR-5243-01	TCGA-D6-A6EK-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-BB-7866-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-BB-7872-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-A4CB-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A6DI-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CQ-7069-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-H7-A6C5-01	TCGA-BA-5557-01	TCGA-CV-7089-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-P3-A6T4-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-MT-A67G-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-IQ-A61K-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CV-7183-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-4726-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-F7-A622-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7104-01	TCGA-D6-A6EN-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-BB-7864-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-BA-A6DF-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-WA-A7H4-01	TCGA-CR-7397-01	TCGA-CN-A640-01	TCGA-CQ-7072-01	TCGA-CR-7370-01	TCGA-RS-A6TP-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-4722-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-DQ-7589-01	TCGA-CN-A63V-01	TCGA-T2-A6X2-01	TCGA-CV-7415-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-5440-01	TCGA-CV-7428-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-CV-A45R-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-CN-6995-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-HL-7533-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A8YP-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CQ-A4CD-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-P3-A6T6-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-UP-A6WW-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-CV-7423-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-IQ-A61L-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-CV-7411-01	TCGA-CR-6474-01	TCGA-MZ-A7D7-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CV-7433-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-4P-AA8J-01	TCGA-CV-7097-01	TCGA-CR-5247-01	TCGA-CN-4723-01	TCGA-BA-A6DG-01	TCGA-UF-A7JF-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-DQ-7595-01	TCGA-CR-7389-01	TCGA-CN-A63T-01	TCGA-CQ-7067-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-BB-7862-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CV-7432-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-BB-A5HU-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-P3-A6SX-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-CR-7393-01	TCGA-HD-A6I0-01	TCGA-CN-6011-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-CN-4725-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-CR-7398-01	TCGA-CR-7367-01	TCGA-F7-A620-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-BB-7871-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-CV-7409-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-CV-A45U-01	TCGA-F7-A623-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-UF-A719-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-BA-5152-01	TCGA-H7-8501-01	TCGA-CV-A6JZ-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-QK-AA3J-01	TCGA-CR-6487-01	TCGA-T2-A6WZ-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-F7-A61V-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-CV-A6JN-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-T2-A6X0-01	TCGA-HD-A634-01	TCGA-DQ-7594-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-DQ-7590-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-BB-7863-01	TCGA-CQ-7063-01	TCGA-HD-7917-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-UF-A7JC-01	TCGA-CN-5373-01	TCGA-HD-A633-01	TCGA-CR-7386-01	TCGA-BA-A4IG-01	TCGA-CN-6010-01	TCGA-UF-A718-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-P3-A6T2-01	TCGA-CV-6954-01	TCGA-CV-7180-01	TCGA-BB-7861-01	TCGA-CR-7394-01	TCGA-CV-5431-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-TN-A7HJ-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-F7-7848-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-P3-A6T7-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-CN-A63Y-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-A4II-01	TCGA-BA-A6DE-01

case_lists/cases_microbiome.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_microbiome
+case_list_name: Samples with microbiome data
+case_list_description: All samples with microbiome data (514 samples)
+case_list_category: other
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-UF-A7JJ-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-CV-5966-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-P3-A6T2-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CV-7432-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-CN-4737-01	TCGA-CQ-A4CA-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-BB-A5HU-01	TCGA-UF-A7JF-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-BB-7866-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CV-7180-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-BB-7872-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-A4CB-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A8YP-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CQ-7069-01	TCGA-T2-A6X0-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-BA-5557-01	TCGA-CV-7089-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-F7-A620-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CQ-A4CD-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-H7-8502-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A45U-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-F7-A622-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7104-01	TCGA-UF-A7JC-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-BB-7864-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-5361-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-CN-6995-01	TCGA-CR-7397-01	TCGA-CQ-7072-01	TCGA-CR-7370-01	TCGA-RS-A6TP-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-4722-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-DQ-7589-01	TCGA-CN-A63V-01	TCGA-CV-7423-01	TCGA-CV-7415-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-7446-01	TCGA-CV-5440-01	TCGA-CV-7428-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-HD-A633-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-WA-A7H4-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-HL-7533-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A6DI-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CV-7183-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-P3-A6T6-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-UP-A6WW-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-T2-A6X2-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-CN-4734-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-CV-7411-01	TCGA-CR-6474-01	TCGA-MZ-A7D7-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CV-7433-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-HD-A634-01	TCGA-CV-7097-01	TCGA-CR-5247-01	TCGA-QK-AA3J-01	TCGA-BA-A6DG-01	TCGA-D6-A6EK-01	TCGA-CQ-6219-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-DQ-7595-01	TCGA-CR-7389-01	TCGA-UF-A719-01	TCGA-CQ-7067-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-BB-7862-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CQ-7068-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-CR-5243-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-P3-A6SX-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-CR-7393-01	TCGA-HD-A6I0-01	TCGA-CN-6011-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-H7-8501-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-TN-A7HJ-01	TCGA-CR-7367-01	TCGA-P3-A6T4-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-CQ-6222-01	TCGA-BB-7871-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-CV-7409-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-4P-AA8J-01	TCGA-F7-A623-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-CN-A63T-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-BA-5152-01	TCGA-CN-4725-01	TCGA-CV-A6JZ-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-CR-6487-01	TCGA-CN-4726-01	TCGA-CV-A6JN-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-F7-A61V-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-T2-A6WZ-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-CN-4723-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-DQ-7594-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-DQ-7590-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-BB-7863-01	TCGA-CQ-7063-01	TCGA-HD-7917-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-D6-A6EN-01	TCGA-CN-5373-01	TCGA-CV-A45R-01	TCGA-CR-7386-01	TCGA-BA-A4IG-01	TCGA-CN-6010-01	TCGA-UF-A718-01	TCGA-CV-7568-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-CR-7377-01	TCGA-CV-6954-01	TCGA-CQ-A4CG-01	TCGA-BB-7861-01	TCGA-CR-7394-01	TCGA-CV-5431-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CV-7421-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-CR-7398-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-F7-7848-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-P3-A6T7-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-A4II-01	TCGA-BA-A6DE-01

case_lists/cases_rppa.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_rppa
+case_list_name: Samples with protein data (RPPA)
+case_list_description: Samples with protein data (RPPA) (211 samples)
+case_list_category: all_cases_with_rppa_data
+case_list_ids: TCGA-CN-4730-01	TCGA-BA-5149-01	TCGA-CV-5436-01	TCGA-CV-5966-01	TCGA-CV-6436-01	TCGA-CV-7418-01	TCGA-CN-6998-01	TCGA-CV-5443-01	TCGA-CV-7263-01	TCGA-CV-7103-01	TCGA-CN-6019-01	TCGA-CN-4741-01	TCGA-CX-7219-01	TCGA-CN-4731-01	TCGA-CN-5366-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CV-7433-01	TCGA-CV-7243-01	TCGA-CN-4723-01	TCGA-CQ-5323-01	TCGA-BA-5557-01	TCGA-CQ-5324-01	TCGA-CN-4740-01	TCGA-BA-6873-01	TCGA-CV-5434-01	TCGA-CN-5355-01	TCGA-CV-7424-01	TCGA-CN-4725-01	TCGA-CV-7255-01	TCGA-D6-6825-01	TCGA-CV-6939-01	TCGA-CX-7086-01	TCGA-CV-5971-01	TCGA-CN-4739-01	TCGA-CV-6951-01	TCGA-CQ-6228-01	TCGA-CV-6933-01	TCGA-CV-6003-01	TCGA-CN-6988-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-CV-7183-01	TCGA-CV-5440-01	TCGA-CV-7102-01	TCGA-CQ-5332-01	TCGA-CV-7261-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-CV-6934-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-CV-6954-01	TCGA-CV-5970-01	TCGA-CV-7254-01	TCGA-CN-4727-01	TCGA-CV-7423-01	TCGA-CN-5359-01	TCGA-BA-5555-01	TCGA-CN-4733-01	TCGA-CN-6024-01	TCGA-CQ-7065-01	TCGA-CV-6938-01	TCGA-CN-4729-01	TCGA-CN-6011-01	TCGA-CN-4734-01	TCGA-CN-4726-01	TCGA-CN-4737-01	TCGA-CV-6441-01	TCGA-BA-5153-01	TCGA-CV-5441-01	TCGA-CV-5976-01	TCGA-CV-6935-01	TCGA-CV-7440-01	TCGA-CV-7407-01	TCGA-CV-7099-01	TCGA-BA-5556-01	TCGA-CV-6948-01	TCGA-CN-5356-01	TCGA-CV-6945-01	TCGA-CV-7178-01	TCGA-CN-5374-01	TCGA-CN-4722-01	TCGA-CV-7414-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-BA-5559-01	TCGA-CV-7252-01	TCGA-CN-5360-01	TCGA-CV-7095-01	TCGA-CV-5432-01	TCGA-CV-7097-01	TCGA-CX-7085-01	TCGA-CV-6942-01	TCGA-CQ-6227-01	TCGA-CN-5361-01	TCGA-CV-5979-01	TCGA-CN-6013-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-CV-5431-01	TCGA-CQ-6219-01	TCGA-CV-6952-01	TCGA-CV-6959-01	TCGA-CV-6433-01	TCGA-CQ-6220-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-CQ-6218-01	TCGA-CV-7253-01	TCGA-D6-6827-01	TCGA-CV-7413-01	TCGA-CV-5973-01	TCGA-CQ-6225-01	TCGA-CN-6010-01	TCGA-BA-5151-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CV-5444-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-7416-01	TCGA-CN-6995-01	TCGA-CQ-6224-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CV-7432-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-BA-5152-01	TCGA-CV-7411-01	TCGA-CV-5430-01	TCGA-CV-6936-01	TCGA-IQ-7630-01	TCGA-CV-5439-01	TCGA-CN-5373-01	TCGA-CN-6997-01	TCGA-CN-6023-01	TCGA-CV-7434-01	TCGA-BA-6870-01	TCGA-CN-6021-01	TCGA-CN-6992-01	TCGA-CV-7089-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-CV-7425-01	TCGA-CV-5442-01	TCGA-CQ-6229-01	TCGA-BB-4217-01	TCGA-CQ-5334-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-CV-7415-01	TCGA-CV-7427-01	TCGA-CV-7180-01	TCGA-CV-5977-01	TCGA-CN-5364-01	TCGA-CV-5978-01	TCGA-CV-6961-01	TCGA-CN-5367-01	TCGA-CV-7177-01	TCGA-CV-7446-01	TCGA-CV-6950-01	TCGA-CV-7435-01	TCGA-CV-7090-01	TCGA-CN-6012-01	TCGA-CV-7428-01	TCGA-CV-7421-01	TCGA-CV-7429-01	TCGA-IQ-7632-01	TCGA-CN-4728-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-6953-01	TCGA-CQ-5326-01	TCGA-CN-6020-01	TCGA-CV-7248-01	TCGA-CV-7430-01	TCGA-CV-7101-01	TCGA-CN-4742-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CV-7422-01	TCGA-CV-7104-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-CV-7236-01	TCGA-BA-6872-01	TCGA-CN-5365-01	TCGA-CV-7438-01	TCGA-CQ-5325-01	TCGA-CV-7437-01	TCGA-CQ-6222-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-4074-01	TCGA-CV-7568-01

case_lists/cases_sequenced.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_sequenced
+case_list_name: Samples with mutation data
+case_list_description: Samples with mutation data (515 samples)
+case_list_category: all_cases_with_mutation_data
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-P3-A6T2-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-CQ-7064-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-F7-A622-01	TCGA-CN-4737-01	TCGA-CQ-A4CA-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-BB-A5HU-01	TCGA-UF-A7JF-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-P3-A6SX-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-BB-7872-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A8YP-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CV-7433-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-H7-A6C5-01	TCGA-BA-5557-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-F7-A620-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-MT-A67G-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-IQ-A61K-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CQ-A4CD-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-6011-01	TCGA-CN-4726-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-P3-A6T6-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7104-01	TCGA-UF-A7JC-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-5361-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-BA-A6DF-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-F7-A61V-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-CN-6995-01	TCGA-CR-7397-01	TCGA-CN-A640-01	TCGA-UP-A6WW-01	TCGA-CR-7370-01	TCGA-CV-7411-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-DQ-7589-01	TCGA-CN-A63V-01	TCGA-T2-A6X2-01	TCGA-CV-7415-01	TCGA-BA-5151-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-7446-01	TCGA-F7-A623-01	TCGA-CV-5440-01	TCGA-CV-7428-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-HD-A633-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-WA-A7H4-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-HL-7533-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A6DI-01	TCGA-MZ-A7D7-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CV-7183-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-CQ-7072-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-CV-7423-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-IQ-A61L-01	TCGA-CN-4734-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-RS-A6TP-01	TCGA-CR-6474-01	TCGA-CQ-A4CB-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CQ-7069-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-4P-AA8J-01	TCGA-CV-A6JZ-01	TCGA-CR-5247-01	TCGA-CN-4723-01	TCGA-BA-A6DG-01	TCGA-D6-A6EK-01	TCGA-CQ-6219-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-CR-7389-01	TCGA-CN-A63T-01	TCGA-CQ-7067-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CV-7432-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-CR-5243-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-BB-7866-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-HD-A6I0-01	TCGA-CV-7089-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-H7-8501-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-CR-7398-01	TCGA-CR-7367-01	TCGA-P3-A6T4-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-CQ-6222-01	TCGA-BB-7871-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-CV-7409-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-CV-A45U-01	TCGA-P3-A6T7-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-UF-A719-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-BA-5152-01	TCGA-CN-4725-01	TCGA-CV-7097-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-QK-AA3J-01	TCGA-CR-6487-01	TCGA-T2-A6WZ-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-CV-6954-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-CV-A6JN-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-T2-A6X0-01	TCGA-HD-A634-01	TCGA-DQ-7594-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-DQ-7590-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-CQ-7063-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-D6-A6EN-01	TCGA-CN-5373-01	TCGA-CV-A45R-01	TCGA-CR-7386-01	TCGA-BA-A4IG-01	TCGA-CN-6010-01	TCGA-UF-A718-01	TCGA-CV-7568-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-CR-7377-01	TCGA-CV-7180-01	TCGA-BB-7861-01	TCGA-CR-7394-01	TCGA-CV-5431-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-TN-A7HJ-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-F7-7848-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-CN-A63Y-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-A4II-01	TCGA-BA-A6DE-01

case_lists/cases_sv.txt

@@ -0,0 +1,6 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: hnsc_tcga_pan_can_atlas_2018_sv
+case_list_name: Samples with SV data
+case_list_description: All samples (515 samples)
+case_list_category: all_cases_with_sv_data
+case_list_ids: TCGA-CV-A45Q-01	TCGA-BA-5149-01	TCGA-CV-5966-01	TCGA-CR-6467-01	TCGA-T2-A6WX-01	TCGA-IQ-A61O-01	TCGA-CN-6998-01	TCGA-CN-6019-01	TCGA-UF-A7JJ-01	TCGA-CN-5366-01	TCGA-MT-A67A-01	TCGA-CX-7085-01	TCGA-CQ-6220-01	TCGA-CV-A45Y-01	TCGA-QK-A8ZB-01	TCGA-CQ-7071-01	TCGA-CN-5355-01	TCGA-P3-A6T2-01	TCGA-CR-5250-01	TCGA-DQ-5624-01	TCGA-CN-A641-01	TCGA-CV-6933-01	TCGA-DQ-7596-01	TCGA-CV-6003-01	TCGA-CV-5970-01	TCGA-CV-7102-01	TCGA-H7-A6C4-01	TCGA-F7-A624-01	TCGA-H7-A76A-01	TCGA-CR-7401-01	TCGA-CQ-6218-01	TCGA-CV-6940-01	TCGA-CQ-7068-01	TCGA-CQ-7064-01	TCGA-BA-7269-01	TCGA-CV-7254-01	TCGA-CV-7425-01	TCGA-P3-A6T5-01	TCGA-BB-4227-01	TCGA-CQ-5333-01	TCGA-CV-6950-01	TCGA-QK-A652-01	TCGA-CN-4733-01	TCGA-BB-A5HZ-01	TCGA-P3-A5QE-01	TCGA-CR-6481-01	TCGA-F7-A622-01	TCGA-CN-4737-01	TCGA-CQ-A4CA-01	TCGA-MZ-A5BI-01	TCGA-CV-5976-01	TCGA-CV-6441-01	TCGA-CV-7440-01	TCGA-CV-6948-01	TCGA-BB-A5HU-01	TCGA-UF-A7JF-01	TCGA-CV-6945-01	TCGA-CR-7382-01	TCGA-P3-A6SX-01	TCGA-CN-A497-01	TCGA-CR-7376-01	TCGA-CV-A6K0-01	TCGA-CV-6937-01	TCGA-DQ-7592-01	TCGA-F7-A50J-01	TCGA-CR-7372-01	TCGA-WA-A7GZ-01	TCGA-CV-7413-01	TCGA-CQ-A4CG-01	TCGA-MZ-A6I9-01	TCGA-CQ-6225-01	TCGA-CV-A464-01	TCGA-HD-A6HZ-01	TCGA-IQ-7631-01	TCGA-BB-7872-01	TCGA-F7-8298-01	TCGA-CR-5248-01	TCGA-CV-A460-01	TCGA-CV-7416-01	TCGA-CN-A49A-01	TCGA-CV-7245-01	TCGA-CV-7250-01	TCGA-CV-6960-01	TCGA-CR-6491-01	TCGA-CN-5374-01	TCGA-CR-6471-01	TCGA-P3-A6SW-01	TCGA-BA-6870-01	TCGA-CV-5443-01	TCGA-CN-6016-01	TCGA-D6-6516-01	TCGA-CV-7235-01	TCGA-BA-5153-01	TCGA-CQ-6229-01	TCGA-CN-5363-01	TCGA-CV-7238-01	TCGA-CN-6994-01	TCGA-CV-6955-01	TCGA-P3-A5Q6-01	TCGA-IQ-A6SG-01	TCGA-BA-A6DD-01	TCGA-QK-A64Z-01	TCGA-CN-5367-01	TCGA-CV-7090-01	TCGA-D6-A74Q-01	TCGA-CR-6484-01	TCGA-CQ-5329-01	TCGA-CN-6018-01	TCGA-CV-A6JM-01	TCGA-D6-6825-01	TCGA-CN-6020-01	TCGA-D6-A6EP-01	TCGA-CV-6959-01	TCGA-CV-A6JD-01	TCGA-CV-5430-01	TCGA-TN-A7HL-01	TCGA-CV-7437-01	TCGA-CN-4742-01	TCGA-CQ-A4C9-01	TCGA-CV-7418-01	TCGA-CV-7263-01	TCGA-UF-A7JS-01	TCGA-CR-6488-01	TCGA-CN-4731-01	TCGA-BA-A8YP-01	TCGA-CR-7392-01	TCGA-CV-7100-01	TCGA-BA-6869-01	TCGA-CV-7433-01	TCGA-CV-7421-01	TCGA-CV-A45O-01	TCGA-CQ-5323-01	TCGA-H7-A6C5-01	TCGA-BA-5557-01	TCGA-DQ-5629-01	TCGA-CV-7427-01	TCGA-CV-7255-01	TCGA-CV-6939-01	TCGA-F7-A620-01	TCGA-CV-5971-01	TCGA-CV-6951-01	TCGA-CX-7219-01	TCGA-CQ-5327-01	TCGA-CN-6989-01	TCGA-D6-6823-01	TCGA-D6-A6EO-01	TCGA-MT-A67G-01	TCGA-BA-A6DA-01	TCGA-CR-6480-01	TCGA-CV-5435-01	TCGA-F7-A61W-01	TCGA-CQ-5332-01	TCGA-IQ-A61K-01	TCGA-H7-7774-01	TCGA-UF-A7JD-01	TCGA-CR-7368-01	TCGA-CX-A4AQ-01	TCGA-CQ-A4CD-01	TCGA-CR-7374-01	TCGA-CV-A45W-01	TCGA-CN-6024-01	TCGA-KU-A6H7-01	TCGA-CR-7364-01	TCGA-CN-6011-01	TCGA-CN-4726-01	TCGA-UF-A71B-01	TCGA-CR-7383-01	TCGA-CQ-A4C6-01	TCGA-BB-4223-01	TCGA-CV-6935-01	TCGA-QK-A6IJ-01	TCGA-T3-A92N-01	TCGA-HD-7754-01	TCGA-CN-A49C-01	TCGA-CV-A6K1-01	TCGA-P3-A6T0-01	TCGA-P3-A6T6-01	TCGA-CV-6941-01	TCGA-CN-4735-01	TCGA-UF-A7JH-01	TCGA-DQ-7593-01	TCGA-CV-7104-01	TCGA-UF-A7JC-01	TCGA-TN-A7HI-01	TCGA-BB-4225-01	TCGA-CQ-A4CI-01	TCGA-CR-6477-01	TCGA-HD-A4C1-01	TCGA-CN-5361-01	TCGA-CN-6013-01	TCGA-BB-A5HY-01	TCGA-CN-4739-01	TCGA-CN-A498-01	TCGA-D6-A4Z9-01	TCGA-BB-A6UM-01	TCGA-BA-A6DF-01	TCGA-D6-6827-01	TCGA-QK-A6IH-01	TCGA-CV-5442-01	TCGA-BA-A4IF-01	TCGA-F7-A61V-01	TCGA-BA-4078-01	TCGA-BA-6871-01	TCGA-CN-5370-01	TCGA-CN-6017-01	TCGA-IQ-A61G-01	TCGA-CN-6995-01	TCGA-CR-7397-01	TCGA-CN-A640-01	TCGA-UP-A6WW-01	TCGA-CR-7370-01	TCGA-CV-7411-01	TCGA-IQ-7630-01	TCGA-BA-A6DB-01	TCGA-CN-6023-01	TCGA-CN-6021-01	TCGA-CN-A63W-01	TCGA-CN-4727-01	TCGA-QK-A8ZA-01	TCGA-DQ-7589-01	TCGA-CN-A63V-01	TCGA-T2-A6X2-01	TCGA-CV-7415-01	TCGA-BA-5151-01	TCGA-UF-A7JO-01	TCGA-CN-5359-01	TCGA-CN-A63U-01	TCGA-CV-5978-01	TCGA-D6-8568-01	TCGA-HD-8314-01	TCGA-CV-7177-01	TCGA-CV-7446-01	TCGA-F7-A623-01	TCGA-CV-5440-01	TCGA-CV-7428-01	TCGA-CV-6953-01	TCGA-HD-8224-01	TCGA-HD-7831-01	TCGA-IQ-A6SH-01	TCGA-KU-A6H8-01	TCGA-CV-7101-01	TCGA-HD-A633-01	TCGA-CR-6473-01	TCGA-QK-A8Z8-01	TCGA-CN-5365-01	TCGA-MT-A7BN-01	TCGA-CR-7391-01	TCGA-CQ-5326-01	TCGA-BA-4074-01	TCGA-CN-4730-01	TCGA-UF-A7JK-01	TCGA-KU-A66T-01	TCGA-F7-8489-01	TCGA-CV-6956-01	TCGA-CN-5369-01	TCGA-WA-A7H4-01	TCGA-DQ-5631-01	TCGA-CQ-6227-01	TCGA-HL-7533-01	TCGA-CV-A45Z-01	TCGA-CN-4740-01	TCGA-BA-A6DL-01	TCGA-CV-5434-01	TCGA-CR-7369-01	TCGA-CX-7086-01	TCGA-F7-A61S-01	TCGA-BA-A6DI-01	TCGA-MZ-A7D7-01	TCGA-CN-6988-01	TCGA-CQ-6223-01	TCGA-CR-7365-01	TCGA-QK-A6IG-01	TCGA-CN-A6V1-01	TCGA-CV-7183-01	TCGA-CV-A45T-01	TCGA-P3-A5QF-01	TCGA-CV-7261-01	TCGA-CN-A6V7-01	TCGA-CV-6934-01	TCGA-CR-7404-01	TCGA-CR-6478-01	TCGA-CQ-7072-01	TCGA-UF-A7J9-01	TCGA-P3-A6T3-01	TCGA-CV-7423-01	TCGA-CR-6492-01	TCGA-BA-5555-01	TCGA-CV-A468-01	TCGA-C9-A480-01	TCGA-RS-A6TO-01	TCGA-CV-6938-01	TCGA-IQ-A61L-01	TCGA-CN-4734-01	TCGA-CV-A6JO-01	TCGA-BB-4224-01	TCGA-CN-A49B-01	TCGA-RS-A6TP-01	TCGA-CR-6474-01	TCGA-CQ-A4CB-01	TCGA-CV-7099-01	TCGA-D6-A6EM-01	TCGA-CN-A499-01	TCGA-CR-7379-01	TCGA-QK-A6V9-01	TCGA-CR-6482-01	TCGA-CN-5356-01	TCGA-CV-A6JT-01	TCGA-CV-7406-01	TCGA-D6-6826-01	TCGA-CR-7402-01	TCGA-BA-5559-01	TCGA-CQ-7069-01	TCGA-CN-5360-01	TCGA-CV-6936-01	TCGA-CV-7095-01	TCGA-IQ-A61E-01	TCGA-4P-AA8J-01	TCGA-CV-A6JZ-01	TCGA-CR-5247-01	TCGA-CN-4723-01	TCGA-BA-A6DG-01	TCGA-D6-A6EK-01	TCGA-CQ-6219-01	TCGA-QK-A6VB-01	TCGA-CV-6433-01	TCGA-CR-7389-01	TCGA-CN-A63T-01	TCGA-CQ-7067-01	TCGA-CR-7371-01	TCGA-F7-A50I-01	TCGA-CV-7253-01	TCGA-CV-5973-01	TCGA-CV-A463-01	TCGA-CV-7247-01	TCGA-CV-7410-01	TCGA-CN-5358-01	TCGA-CV-6943-01	TCGA-DQ-7591-01	TCGA-BB-4228-01	TCGA-CR-7385-01	TCGA-D6-8569-01	TCGA-CV-7432-01	TCGA-CQ-5330-01	TCGA-D6-6515-01	TCGA-IQ-A61I-01	TCGA-CR-5243-01	TCGA-MT-A51W-01	TCGA-CV-5439-01	TCGA-DQ-7588-01	TCGA-BB-7866-01	TCGA-HD-7832-01	TCGA-CV-7434-01	TCGA-HD-A6I0-01	TCGA-CV-7089-01	TCGA-CV-5444-01	TCGA-CN-6997-01	TCGA-CV-5979-01	TCGA-BB-A6UO-01	TCGA-CR-6472-01	TCGA-CQ-5334-01	TCGA-QK-A8Z9-01	TCGA-CV-7236-01	TCGA-H7-8501-01	TCGA-CR-7390-01	TCGA-CN-5364-01	TCGA-IQ-7632-01	TCGA-HD-7753-01	TCGA-BA-A4IH-01	TCGA-CR-7395-01	TCGA-CN-A6UY-01	TCGA-CV-5432-01	TCGA-CR-7398-01	TCGA-CR-7367-01	TCGA-P3-A6T4-01	TCGA-CV-6962-01	TCGA-CN-6022-01	TCGA-MT-A67F-01	TCGA-HD-8635-01	TCGA-CR-7399-01	TCGA-CV-7438-01	TCGA-P3-A6T8-01	TCGA-UF-A7JT-01	TCGA-CQ-6222-01	TCGA-BB-7871-01	TCGA-KU-A66S-01	TCGA-D6-A6ES-01	TCGA-CV-A45V-01	TCGA-CV-6436-01	TCGA-CV-7103-01	TCGA-UF-A71E-01	TCGA-CN-4741-01	TCGA-QK-A8Z7-01	TCGA-CV-7409-01	TCGA-QK-A6IF-01	TCGA-CV-7243-01	TCGA-CV-A45U-01	TCGA-P3-A6T7-01	TCGA-CV-6952-01	TCGA-CQ-5324-01	TCGA-UF-A719-01	TCGA-BA-4076-01	TCGA-BA-6873-01	TCGA-CV-A6K2-01	TCGA-MT-A51X-01	TCGA-BA-5152-01	TCGA-CN-4725-01	TCGA-CV-7097-01	TCGA-CV-A45P-01	TCGA-CV-7422-01	TCGA-CQ-A4CE-01	TCGA-CQ-6228-01	TCGA-QK-AA3J-01	TCGA-CR-6487-01	TCGA-T2-A6WZ-01	TCGA-CR-6493-01	TCGA-IQ-A61J-01	TCGA-IQ-A61H-01	TCGA-CN-4738-01	TCGA-D6-6824-01	TCGA-UF-A7JA-01	TCGA-CV-6954-01	TCGA-CV-A6JU-01	TCGA-DQ-5625-01	TCGA-C9-A47Z-01	TCGA-CR-7380-01	TCGA-CV-A6JN-01	TCGA-CV-A45X-01	TCGA-BA-A6DJ-01	TCGA-CV-5436-01	TCGA-CQ-7065-01	TCGA-BA-5558-01	TCGA-CN-4729-01	TCGA-CV-7424-01	TCGA-HD-7229-01	TCGA-CN-A6V6-01	TCGA-BB-8601-01	TCGA-QK-AA3K-01	TCGA-CV-7407-01	TCGA-CV-7248-01	TCGA-T3-A92M-01	TCGA-CN-A6V3-01	TCGA-QK-A6VC-01	TCGA-T2-A6X0-01	TCGA-HD-A634-01	TCGA-DQ-7594-01	TCGA-CV-7178-01	TCGA-UF-A71A-01	TCGA-CV-7414-01	TCGA-CR-7388-01	TCGA-DQ-7590-01	TCGA-CV-7252-01	TCGA-D6-A4ZB-01	TCGA-CQ-7063-01	TCGA-BA-6868-01	TCGA-CV-6942-01	TCGA-CV-5441-01	TCGA-CN-4736-01	TCGA-CQ-5331-01	TCGA-D6-A6EN-01	TCGA-CN-5373-01	TCGA-CV-A45R-01	TCGA-CR-7386-01	TCGA-BA-A4IG-01	TCGA-CN-6010-01	TCGA-UF-A718-01	TCGA-CV-7568-01	TCGA-P3-A5Q5-01	TCGA-CQ-6224-01	TCGA-BA-A6D8-01	TCGA-CV-A6JY-01	TCGA-DQ-5630-01	TCGA-CR-7377-01	TCGA-CV-7180-01	TCGA-BB-7861-01	TCGA-CR-7394-01	TCGA-CV-5431-01	TCGA-UF-A7JV-01	TCGA-CN-6992-01	TCGA-CV-A465-01	TCGA-CR-5249-01	TCGA-BB-4217-01	TCGA-CR-7373-01	TCGA-TN-A7HJ-01	TCGA-F7-A50G-01	TCGA-BB-7870-01	TCGA-CV-5977-01	TCGA-F7-7848-01	TCGA-CV-6961-01	TCGA-CR-6470-01	TCGA-CV-7435-01	TCGA-CN-6012-01	TCGA-CV-A461-01	TCGA-CV-7429-01	TCGA-QK-A6II-01	TCGA-CN-4728-01	TCGA-UF-A71D-01	TCGA-BA-5556-01	TCGA-HD-8634-01	TCGA-MT-A67D-01	TCGA-P3-A5QA-01	TCGA-CV-7430-01	TCGA-D6-6517-01	TCGA-CV-7242-01	TCGA-CN-A642-01	TCGA-CV-A6JE-01	TCGA-BB-8596-01	TCGA-CN-A63Y-01	TCGA-CQ-A4CH-01	TCGA-D6-A6EQ-01	TCGA-BA-6872-01	TCGA-CQ-5325-01	TCGA-CN-6996-01	TCGA-CV-7091-01	TCGA-BA-A4II-01	TCGA-BA-A6DE-01

data_clinical_supp_hypoxia.txt

@@ -0,0 +1,521 @@
+#Patient Identifier	Buffa Hypoxia Score	Winter Hypoxia Score	Ragnum Hypoxia Score
+#Identifier to uniquely specify a patient.	mRNA based Buffa Hypoxia Score	mRNA based Winter Hypoxia Score	mRNA based Ragnum Hypoxia Score
+#STRING	NUMBER	NUMBER	NUMBER
+#PATIENT	PATIENT	PATIENT	PATIENT
+#1	1	1	1
+PATIENT_ID	BUFFA_HYPOXIA_SCORE	WINTER_HYPOXIA_SCORE	RAGNUM_HYPOXIA_SCORE
+TCGA-CR-5250	-15	-20	8
+TCGA-BA-5153	-11	-20	8
+TCGA-QK-A6IF	-11	-18	8
+TCGA-CN-6019	-11	14	-10
+TCGA-HD-8314	-7	4	4
+TCGA-CN-5360	-7	20	10
+TCGA-CR-7393	-5	-2	-8
+TCGA-CN-5358	-5	4	8
+TCGA-D6-A6EP	-5	10	-8
+TCGA-D6-6824	-5	20	0
+TCGA-QK-AA3J	-5	26	6
+TCGA-HD-7754	-1	20	14
+TCGA-HD-8224	1	4	-8
+TCGA-CR-7374	1	14	14
+TCGA-IQ-7631	1	22	-20
+TCGA-BA-4078	1	24	12
+TCGA-CV-A45R	1	32	-4
+TCGA-CV-5430	3	2	10
+TCGA-CV-6939	3	8	10
+TCGA-BA-5559	3	14	10
+TCGA-CR-7382	3	14	10
+TCGA-CR-6480	5	10	18
+TCGA-CR-7376	5	12	10
+TCGA-CV-5971	5	32	0
+TCGA-P3-A5QE	7	2	8
+TCGA-DQ-7593	7	4	12
+TCGA-CR-6482	7	10	12
+TCGA-BB-4225	7	14	12
+TCGA-BB-8596	7	22	16
+TCGA-QK-A652	7	40	6
+TCGA-CR-7394	9	18	2
+TCGA-D6-6827	9	18	16
+TCGA-CN-6016	9	20	-12
+TCGA-CR-6487	9	20	20
+TCGA-CV-7406	9	22	4
+TCGA-CV-A45O	9	24	-10
+TCGA-CX-7085	9	26	4
+TCGA-CR-7392	9	26	10
+TCGA-CV-7446	9	28	6
+TCGA-CN-4737	9	34	6
+TCGA-CR-7389	9	38	2
+TCGA-CN-6017	11	24	-6
+TCGA-CR-6471	11	24	12
+TCGA-CR-7385	11	34	14
+TCGA-CN-4739	11	36	16
+TCGA-DQ-7595	11	38	14
+TCGA-CN-6021	11	40	6
+TCGA-CQ-7069	11	46	-4
+TCGA-CV-6943	13	16	0
+TCGA-BB-4223	13	18	14
+TCGA-CV-5978	13	26	16
+TCGA-QK-A8Z7	13	28	14
+TCGA-BA-5151	13	30	10
+TCGA-CR-7391	13	32	2
+TCGA-CR-7368	13	36	14
+TCGA-CV-5970	13	40	8
+TCGA-CR-7370	13	40	12
+TCGA-IQ-A61J	13	44	-4
+TCGA-CN-4742	13	46	14
+TCGA-CN-4741	13	52	14
+TCGA-CV-5443	15	20	12
+TCGA-D6-6515	15	26	16
+TCGA-CN-4733	15	28	12
+TCGA-F7-7848	15	32	16
+TCGA-CR-5248	15	34	16
+TCGA-CR-7398	15	36	16
+TCGA-BB-7872	15	38	4
+TCGA-CN-6988	15	40	12
+TCGA-CQ-5334	15	44	16
+TCGA-WA-A7H4	15	46	16
+TCGA-CN-5374	15	48	8
+TCGA-CR-7369	15	50	8
+TCGA-UF-A71D	15	50	14
+TCGA-CV-6955	17	20	6
+TCGA-CN-6023	17	26	20
+TCGA-UF-A719	17	32	12
+TCGA-CN-A6V6	17	32	14
+TCGA-P3-A5Q5	17	34	22
+TCGA-CR-7372	17	38	14
+TCGA-CN-A497	17	38	18
+TCGA-CR-6488	17	40	0
+TCGA-QK-A6V9	17	42	16
+TCGA-CV-7177	17	44	12
+TCGA-CV-7101	17	44	14
+TCGA-QK-A8Z8	17	46	16
+TCGA-D6-A6EO	17	48	12
+TCGA-CQ-6223	17	56	12
+TCGA-BA-A4IH	19	14	8
+TCGA-CV-7254	19	22	20
+TCGA-IQ-A61I	19	26	14
+TCGA-BB-7861	19	28	12
+TCGA-CR-6467	19	30	14
+TCGA-DQ-5625	19	34	-2
+TCGA-CN-5373	19	34	2
+TCGA-BA-A6DB	19	38	-4
+TCGA-CV-7425	19	38	8
+TCGA-CN-5359	19	40	12
+TCGA-HD-A4C1	19	40	14
+TCGA-CN-6013	19	42	4
+TCGA-CV-6937	19	42	14
+TCGA-DQ-7594	19	42	20
+TCGA-HD-8635	19	50	10
+TCGA-QK-A8Z9	19	56	6
+TCGA-CR-6470	21	14	10
+TCGA-CR-5243	21	14	12
+TCGA-CN-A6UY	21	20	14
+TCGA-H7-7774	21	26	6
+TCGA-CR-6472	21	30	12
+TCGA-CQ-7063	21	34	10
+TCGA-CV-7103	21	40	12
+TCGA-CR-7402	21	40	18
+TCGA-CX-7219	21	42	4
+TCGA-CQ-5331	21	42	16
+TCGA-KU-A6H8	21	44	0
+TCGA-CV-A461	21	44	4
+TCGA-CV-A468	21	44	8
+TCGA-CV-5434	21	46	22
+TCGA-BA-5556	21	48	12
+TCGA-CQ-7072	21	50	4
+TCGA-CR-6484	21	50	8
+TCGA-CN-5361	21	52	16
+TCGA-CV-7263	21	54	8
+TCGA-CQ-5323	21	60	14
+TCGA-C9-A480	21	62	0
+TCGA-UF-A7J9	21	64	18
+TCGA-CN-A6V1	23	18	16
+TCGA-CN-4735	23	28	20
+TCGA-HD-A634	23	30	8
+TCGA-BB-7866	23	30	20
+TCGA-DQ-7591	23	32	18
+TCGA-CN-4736	23	36	8
+TCGA-CR-7377	23	38	16
+TCGA-CN-6012	23	38	20
+TCGA-P3-A6SW	23	40	18
+TCGA-CR-6481	23	42	20
+TCGA-CQ-7065	23	46	10
+TCGA-CQ-7067	23	46	12
+TCGA-CV-7435	23	46	12
+TCGA-CQ-A4C9	23	46	16
+TCGA-CV-A6K0	23	46	16
+TCGA-CQ-6222	23	50	-2
+TCGA-MT-A67A	23	50	14
+TCGA-CQ-A4CH	23	52	20
+TCGA-F7-A50G	23	54	8
+TCGA-CN-5356	23	56	20
+TCGA-CV-5973	23	58	-8
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+TCGA-CV-7090	25	44	8
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+TCGA-UF-A7JJ	25	50	16
+TCGA-CV-7422	25	52	16
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+TCGA-CV-7104	27	42	10
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+TCGA-CV-7236	27	48	16
+TCGA-CV-7243	27	50	8
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+TCGA-CV-5435	27	54	18
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+TCGA-H7-A6C4	27	58	-2
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+TCGA-MT-A51X	27	60	8
+TCGA-CN-6994	27	60	10
+TCGA-CR-7371	27	60	20
+TCGA-CV-6951	27	62	0
+TCGA-QK-A64Z	27	62	10
+TCGA-CQ-A4CE	27	62	12
+TCGA-DQ-7592	27	64	12
+TCGA-P3-A6T8	27	68	20
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+TCGA-D6-8569	29	38	18
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+TCGA-BA-A6D8	29	44	12
+TCGA-MZ-A6I9	29	44	16
+TCGA-CR-7380	29	46	14
+TCGA-CV-A45X	29	48	8
+TCGA-MT-A67F	29	48	14
+TCGA-CV-A6K1	29	50	6
+TCGA-CR-7395	29	50	14
+TCGA-CN-6010	29	52	20
+TCGA-KU-A66S	29	52	20
+TCGA-CV-7183	29	54	4
+TCGA-BA-A6DE	29	54	6
+TCGA-CR-7397	29	54	10
+TCGA-CV-7261	29	54	14
+TCGA-CV-6938	29	54	16
+TCGA-F7-A61W	29	54	16
+TCGA-F7-A623	29	54	16
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+TCGA-CV-7250	29	56	20
+TCGA-CR-7404	29	56	22
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+TCGA-CV-7248	29	58	12
+TCGA-CV-7416	29	58	14
+TCGA-QK-AA3K	29	58	20
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+TCGA-D6-6823	29	66	16
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+TCGA-DQ-5624	31	50	2
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+TCGA-CQ-5325	31	52	14
+TCGA-CV-A6JT	31	54	-6
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+TCGA-H7-8502	31	58	14
+TCGA-QK-A6VB	31	58	18
+TCGA-CV-A45Y	31	58	20
+TCGA-F7-A50I	31	60	0
+TCGA-CQ-5333	31	60	12
+TCGA-CQ-A4CA	31	62	12
+TCGA-CN-A6V7	31	62	18
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+TCGA-HD-7753	31	62	18
+TCGA-CN-6997	31	66	24
+TCGA-CV-A465	31	70	14
+TCGA-MZ-A5BI	33	36	16
+TCGA-UP-A6WW	33	38	18
+TCGA-BA-A8YP	33	42	14
+TCGA-DQ-5631	33	42	22
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+TCGA-HD-A6I0	33	46	8
+TCGA-T2-A6WZ	33	46	12
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+TCGA-CQ-7068	33	52	10
+TCGA-CV-6960	33	52	14
+TCGA-CV-A45Q	33	54	-6
+TCGA-CV-A45T	33	54	12
+TCGA-DQ-5630	33	54	12
+TCGA-CV-A463	33	56	6
+TCGA-CV-A6JD	33	56	6
+TCGA-QK-A6IJ	33	56	12
+TCGA-CN-6989	33	56	26
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+TCGA-HD-7832	33	60	14
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+TCGA-CQ-5327	33	62	10
+TCGA-CV-6953	33	64	0
+TCGA-CV-5440	33	64	6
+TCGA-BA-A4IG	33	64	16
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+TCGA-CN-5367	33	66	12
+TCGA-QK-A8ZB	33	66	16
+TCGA-CV-A6K2	33	66	18
+TCGA-UF-A71B	33	66	18
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+TCGA-CQ-5329	33	70	24
+TCGA-CV-7253	33	72	16
+TCGA-D6-A6ES	35	42	-8
+TCGA-BA-6871	35	46	18
+TCGA-CV-A6JY	35	52	6
+TCGA-CV-A6JM	35	52	10
+TCGA-D6-A6EM	35	54	14
+TCGA-BA-5555	35	54	16
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+TCGA-CR-6492	35	58	12
+TCGA-UF-A71E	35	58	16
+TCGA-CN-5369	35	60	22
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+TCGA-CV-6942	35	62	20
+TCGA-CR-7373	35	64	16
+TCGA-CQ-5326	35	64	22
+TCGA-BA-A6DI	35	66	10
+TCGA-CN-A49C	35	66	18
+TCGA-CV-7100	35	66	22
+TCGA-D6-8568	35	68	16
+TCGA-CV-7238	35	68	20
+TCGA-CN-A499	35	72	12
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+TCGA-CN-6011	35	72	14
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+TCGA-T3-A92M	35	72	18
+TCGA-CR-6491	35	74	18
+TCGA-BA-6870	37	46	18
+TCGA-BA-5557	37	50	8
+TCGA-CV-7437	37	50	12
+TCGA-CV-A45V	37	54	2
+TCGA-TN-A7HI	37	54	16
+TCGA-CV-A45P	37	56	14
+TCGA-CN-6992	37	56	18
+TCGA-CV-7429	37	56	20
+TCGA-CQ-A4CI	37	56	22
+TCGA-CV-A6JN	37	58	16
+TCGA-CR-6473	37	58	20
+TCGA-HD-A6HZ	37	58	20
+TCGA-CV-7434	37	60	14
+TCGA-UF-A7JC	37	60	14
+TCGA-UF-A7JO	37	60	14
+TCGA-CQ-7071	37	60	16
+TCGA-IQ-A61H	37	60	20
+TCGA-CN-6998	37	62	6
+TCGA-CV-A6JZ	37	62	20
+TCGA-CN-A49A	37	62	22
+TCGA-IQ-A61O	37	64	8
+TCGA-CR-6477	37	64	12
+TCGA-CV-7438	37	64	18
+TCGA-P3-A5QF	37	64	18
+TCGA-CV-6950	37	64	20
+TCGA-BA-A6DG	37	66	-6
+TCGA-UF-A7JF	37	66	14
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+TCGA-CV-6956	37	66	16
+TCGA-CV-6952	37	66	18
+TCGA-CQ-A4C6	37	66	20
+TCGA-CR-7367	37	68	10
+TCGA-CV-5977	37	68	10
+TCGA-4P-AA8J	37	68	12
+TCGA-CN-4727	37	68	14
+TCGA-CV-5979	37	68	22
+TCGA-CV-6940	37	70	12
+TCGA-CN-4730	37	70	14
+TCGA-CR-7390	37	70	22
+TCGA-BA-6873	37	70	24
+TCGA-CV-5439	37	72	12
+TCGA-CN-6018	37	74	24
+TCGA-MT-A51W	37	76	8
+TCGA-F7-A624	39	40	22
+TCGA-D6-A6EN	39	42	14
+TCGA-D6-A6EK	39	52	6
+TCGA-QK-A6VC	39	52	22
+TCGA-CV-6436	39	54	16
+TCGA-CN-4726	39	56	0
+TCGA-CV-5431	39	56	24
+TCGA-IQ-A6SH	39	58	16
+TCGA-CN-5370	39	58	20
+TCGA-CV-5976	39	58	20
+TCGA-QK-A6IG	39	60	14
+TCGA-CV-7099	39	60	18
+TCGA-MT-A67D	39	60	18
+TCGA-C9-A47Z	39	62	6
+TCGA-BB-7864	39	62	18
+TCGA-CV-6936	39	62	20
+TCGA-CQ-5332	39	64	14
+TCGA-CV-7433	39	64	20
+TCGA-BB-7863	39	66	10
+TCGA-BA-A4II	39	66	14
+TCGA-F7-A61V	39	68	10
+TCGA-CV-7255	39	68	16
+TCGA-UF-A7JK	39	68	16
+TCGA-CN-4725	39	70	20
+TCGA-CV-7089	39	72	14
+TCGA-CV-5432	39	72	16
+TCGA-CQ-6220	39	76	16
+TCGA-IQ-A61E	39	76	20
+TCGA-P3-A5QA	39	76	20
+TCGA-CQ-6228	39	80	14
+TCGA-CQ-6225	39	80	20
+TCGA-MT-A7BN	41	44	18
+TCGA-TN-A7HL	41	48	18
+TCGA-BB-7862	41	52	18
+TCGA-CN-4729	41	56	18
+TCGA-CV-7421	41	58	8
+TCGA-MZ-A7D7	41	60	14
+TCGA-CV-6933	41	60	16
+TCGA-D6-A6EQ	41	62	6
+TCGA-CV-7097	41	62	16
+TCGA-CV-7102	41	62	18
+TCGA-CN-A498	41	62	20
+TCGA-CV-7091	41	64	14
+TCGA-BA-6868	41	64	18
+TCGA-CN-4734	41	64	18
+TCGA-BB-8601	41	64	22
+TCGA-CN-A49B	41	66	14
+TCGA-UF-A7JT	41	66	14
+TCGA-UF-A7JA	41	66	18
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+TCGA-BA-A6DA	41	70	8
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+TCGA-F7-A622	41	70	14
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+TCGA-CV-6961	41	70	22
+TCGA-T2-A6WX	41	72	16
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+TCGA-F7-A50J	41	74	8
+TCGA-P3-A6T2	41	74	20
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+TCGA-P3-A6T3	41	76	2
+TCGA-QK-A6IH	41	76	4
+TCGA-P3-A6SX	41	78	10
+TCGA-HD-7229	43	60	14
+TCGA-CR-6478	43	62	20
+TCGA-BA-A6DD	43	62	24
+TCGA-CV-6962	43	64	16
+TCGA-CV-A45W	43	64	20
+TCGA-HD-8634	43	66	12
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+TCGA-CN-4731	43	72	20
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+TCGA-CV-A45U	43	74	22
+TCGA-HL-7533	43	76	16
+TCGA-TN-A7HJ	43	76	16
+TCGA-CN-A6V3	43	76	18
+TCGA-BA-A4IF	43	76	22
+TCGA-RS-A6TO	43	76	22
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+TCGA-CN-5365	43	80	16
+TCGA-F7-A61S	43	80	18
+TCGA-QK-A6II	45	62	-2
+TCGA-F7-8298	45	64	18
+TCGA-CV-5441	45	66	18
+TCGA-CV-A6JO	45	68	12
+TCGA-CV-7440	45	68	20
+TCGA-CN-6995	45	70	20
+TCGA-P3-A6T0	45	72	12
+TCGA-CQ-A4CG	45	72	22
+TCGA-BB-A6UO	45	74	18
+TCGA-CV-7432	45	74	18
+TCGA-T3-A92N	45	74	20
+TCGA-BB-A5HY	45	74	22
+TCGA-UF-A7JD	45	74	24
+TCGA-CN-A63T	45	76	10
+TCGA-BA-4074	45	76	20
+TCGA-CV-6003	45	76	22
+TCGA-P3-A5Q6	45	76	24
+TCGA-CN-A63W	45	78	16
+TCGA-BA-4076	45	78	20
+TCGA-HD-A633	45	80	14
+TCGA-HD-7917	45	82	16
+TCGA-UF-A7JH	47	68	14
+TCGA-KU-A66T	47	68	18
+TCGA-H7-8501	47	74	22
+TCGA-BB-7870	47	80	16
+TCGA-IQ-A61G	47	80	20
+TCGA-UF-A7JV	47	80	26
+TCGA-IQ-A6SG	47	84	14
+TCGA-CV-6945	49	70	22
+TCGA-BB-A5HU	49	70	24
+TCGA-BB-4227	49	74	22
+TCGA-DQ-7588	49	80	20
+TCGA-CV-7095	49	82	16
+TCGA-CN-A63V	51	72	14
+TCGA-CN-A642	51	76	16

data_cna.txt

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:d7da0dcf863128283b58d2f13419898185dab6b4fe28701a00e5942e3946e989
+size 28877602

data_gene_panel_matrix.txt

@@ -0,0 +1,524 @@
+SAMPLE_ID	mutations	gistic	structural_variants
+TCGA-CV-A45Q-01	WXS	WXS	WXS
+TCGA-BA-5149-01	WXS	WXS	WXS
+TCGA-CV-5966-01	WXS	WXS	WXS
+TCGA-CR-6467-01	WXS	WXS	WXS
+TCGA-T2-A6WX-01	WXS	WXS	WXS
+TCGA-IQ-A61O-01	WXS	WXS	WXS
+TCGA-CN-6998-01	WXS	WXS	WXS
+TCGA-CN-6019-01	WXS	WXS	WXS
+TCGA-UF-A7JJ-01	WXS	WXS	WXS
+TCGA-CN-5366-01	WXS	WXS	WXS
+TCGA-MT-A67A-01	WXS	WXS	WXS
+TCGA-CX-7085-01	WXS	WXS	WXS
+TCGA-CQ-6220-01	WXS	WXS	WXS
+TCGA-CV-A45Y-01	WXS	WXS	WXS
+TCGA-QK-A8ZB-01	WXS	WXS	WXS
+TCGA-CQ-7071-01	WXS	WXS	WXS
+TCGA-CN-5355-01	WXS	WXS	WXS
+TCGA-P3-A6T2-01	WXS	WXS	WXS
+TCGA-CR-5250-01	WXS	WXS	WXS
+TCGA-DQ-5624-01	WXS	WXS	WXS
+TCGA-CN-A641-01	WXS	WXS	WXS
+TCGA-CV-6933-01	WXS	WXS	WXS
+TCGA-DQ-7596-01	WXS	WXS	WXS
+TCGA-CV-6003-01	WXS	WXS	WXS
+TCGA-CV-5970-01	WXS	WXS	WXS
+TCGA-CV-7102-01	WXS	WXS	WXS
+TCGA-H7-A6C4-01	WXS	WXS	WXS
+TCGA-F7-A624-01	WXS	WXS	WXS
+TCGA-H7-A76A-01	WXS	WXS	WXS
+TCGA-CR-7401-01	WXS	WXS	WXS
+TCGA-CQ-6218-01	WXS	WXS	WXS
+TCGA-CV-6940-01	WXS	WXS	WXS
+TCGA-CQ-7068-01	WXS	WXS	WXS
+TCGA-CQ-7064-01	WXS	WXS	WXS
+TCGA-BA-7269-01	WXS	WXS	WXS
+TCGA-CV-7254-01	WXS	WXS	WXS
+TCGA-CV-7425-01	WXS	WXS	WXS
+TCGA-P3-A6T5-01	WXS	WXS	WXS
+TCGA-BB-4227-01	WXS	WXS	WXS
+TCGA-CQ-5333-01	WXS	WXS	WXS
+TCGA-CV-6950-01	WXS	WXS	WXS
+TCGA-QK-A652-01	WXS	WXS	WXS
+TCGA-CN-4733-01	WXS	WXS	WXS
+TCGA-BB-A5HZ-01	WXS	WXS	WXS
+TCGA-P3-A5QE-01	WXS	WXS	WXS
+TCGA-CR-6481-01	WXS	WXS	WXS
+TCGA-F7-A622-01	WXS	WXS	WXS
+TCGA-CN-4737-01	WXS	WXS	WXS
+TCGA-CQ-A4CA-01	WXS	WXS	WXS
+TCGA-MZ-A5BI-01	WXS	WXS	WXS
+TCGA-CV-5976-01	WXS	WXS	WXS
+TCGA-CV-6441-01	WXS	WXS	WXS
+TCGA-CV-7440-01	WXS	WXS	WXS
+TCGA-CV-6948-01	WXS	WXS	WXS
+TCGA-BB-A5HU-01	WXS	WXS	WXS
+TCGA-UF-A7JF-01	WXS	WXS	WXS
+TCGA-CV-6945-01	WXS	WXS	WXS
+TCGA-CR-7382-01	WXS	WXS	WXS
+TCGA-P3-A6SX-01	WXS	WXS	WXS
+TCGA-CN-A497-01	WXS	WXS	WXS
+TCGA-CR-7376-01	WXS	WXS	WXS
+TCGA-CV-A6K0-01	WXS	WXS	WXS
+TCGA-CV-6937-01	WXS	WXS	WXS
+TCGA-DQ-7592-01	WXS	WXS	WXS
+TCGA-F7-A50J-01	WXS	WXS	WXS
+TCGA-CR-7372-01	WXS	WXS	WXS
+TCGA-WA-A7GZ-01	WXS	WXS	WXS
+TCGA-CV-7413-01	WXS	WXS	WXS
+TCGA-CQ-A4CG-01	WXS	WXS	WXS
+TCGA-MZ-A6I9-01	WXS	WXS	WXS
+TCGA-CQ-6225-01	WXS	WXS	WXS
+TCGA-CV-A464-01	WXS	WXS	WXS
+TCGA-HD-A6HZ-01	WXS	WXS	WXS
+TCGA-IQ-7631-01	WXS	WXS	WXS
+TCGA-BB-7872-01	WXS	WXS	WXS
+TCGA-F7-8298-01	WXS	WXS	WXS
+TCGA-CR-5248-01	WXS	WXS	WXS
+TCGA-CV-A460-01	WXS	WXS	WXS
+TCGA-CV-7416-01	WXS	WXS	WXS
+TCGA-CN-A49A-01	WXS	WXS	WXS
+TCGA-CV-7245-01	WXS	WXS	WXS
+TCGA-CV-7250-01	WXS	WXS	WXS
+TCGA-CV-6960-01	WXS	WXS	WXS
+TCGA-CR-6491-01	WXS	WXS	WXS
+TCGA-CN-5374-01	WXS	WXS	WXS
+TCGA-CR-6471-01	WXS	WXS	WXS
+TCGA-P3-A6SW-01	WXS	WXS	WXS
+TCGA-BA-6870-01	WXS	WXS	WXS
+TCGA-CV-5443-01	WXS	WXS	WXS
+TCGA-CN-6016-01	WXS	WXS	WXS
+TCGA-D6-6516-01	WXS	WXS	WXS
+TCGA-CV-7235-01	WXS	WXS	WXS
+TCGA-BA-5153-01	WXS	WXS	WXS
+TCGA-CQ-6229-01	WXS	WXS	WXS
+TCGA-CN-5363-01	WXS	WXS	WXS
+TCGA-CV-7238-01	WXS	WXS	WXS
+TCGA-CN-6994-01	WXS	WXS	WXS
+TCGA-CV-6955-01	WXS	WXS	WXS
+TCGA-P3-A5Q6-01	WXS	WXS	WXS
+TCGA-IQ-A6SG-01	WXS	WXS	WXS
+TCGA-BA-A6DD-01	WXS	WXS	WXS
+TCGA-QK-A64Z-01	WXS	WXS	WXS
+TCGA-CN-5367-01	WXS	WXS	WXS
+TCGA-CV-7090-01	WXS	WXS	WXS
+TCGA-D6-A74Q-01	WXS	WXS	WXS
+TCGA-CR-6484-01	WXS	WXS	WXS
+TCGA-CQ-5329-01	WXS	WXS	WXS
+TCGA-CN-6018-01	WXS	WXS	WXS
+TCGA-CV-A6JM-01	WXS	WXS	WXS
+TCGA-D6-6825-01	WXS	WXS	WXS
+TCGA-CN-6020-01	WXS	WXS	WXS
+TCGA-D6-A6EP-01	WXS	WXS	WXS
+TCGA-CV-6959-01	WXS	WXS	WXS
+TCGA-CV-A6JD-01	WXS	WXS	WXS
+TCGA-CV-5430-01	WXS	WXS	WXS
+TCGA-TN-A7HL-01	WXS	WXS	WXS
+TCGA-CV-7437-01	WXS	WXS	WXS
+TCGA-CN-4742-01	WXS	WXS	WXS
+TCGA-CQ-A4C9-01	WXS	WXS	WXS
+TCGA-CV-7418-01	WXS	WXS	WXS
+TCGA-CV-7263-01	WXS	WXS	WXS
+TCGA-UF-A7JS-01	WXS	WXS	WXS
+TCGA-CR-6488-01	WXS	WXS	WXS
+TCGA-CN-4731-01	WXS	WXS	WXS
+TCGA-BA-A8YP-01	WXS	WXS	WXS
+TCGA-CR-7392-01	WXS	WXS	WXS
+TCGA-CV-7100-01	WXS	WXS	WXS
+TCGA-BA-6869-01	WXS	WXS	WXS
+TCGA-CV-7433-01	WXS	WXS	WXS
+TCGA-CV-7421-01	WXS	WXS	WXS
+TCGA-CV-A45O-01	WXS	WXS	WXS
+TCGA-CQ-5323-01	WXS	WXS	WXS
+TCGA-H7-A6C5-01	WXS	WXS	WXS
+TCGA-BA-5557-01	WXS	WXS	WXS
+TCGA-DQ-5629-01	WXS	WXS	WXS
+TCGA-CV-7427-01	WXS	WXS	WXS
+TCGA-CV-7255-01	WXS	WXS	WXS
+TCGA-CV-6939-01	WXS	WXS	WXS
+TCGA-F7-A620-01	WXS	WXS	WXS
+TCGA-CV-5971-01	WXS	WXS	WXS
+TCGA-CV-6951-01	WXS	WXS	WXS
+TCGA-CX-7219-01	WXS	WXS	WXS
+TCGA-CQ-5327-01	WXS	WXS	WXS
+TCGA-CN-6989-01	WXS	WXS	WXS
+TCGA-D6-6823-01	WXS	WXS	WXS
+TCGA-D6-A6EO-01	WXS	WXS	WXS
+TCGA-MT-A67G-01	WXS	WXS	WXS
+TCGA-BA-A6DA-01	WXS	WXS	WXS
+TCGA-CR-6480-01	WXS	WXS	WXS
+TCGA-CV-5435-01	WXS	WXS	WXS
+TCGA-F7-A61W-01	WXS	WXS	WXS
+TCGA-CQ-5332-01	WXS	WXS	WXS
+TCGA-IQ-A61K-01	WXS	WXS	WXS
+TCGA-H7-7774-01	WXS	WXS	WXS
+TCGA-UF-A7JD-01	WXS	WXS	WXS
+TCGA-CR-7368-01	WXS	WXS	WXS
+TCGA-CX-A4AQ-01	WXS	WXS	WXS
+TCGA-CQ-A4CD-01	WXS	WXS	WXS
+TCGA-CR-7374-01	WXS	WXS	WXS
+TCGA-CV-A45W-01	WXS	WXS	WXS
+TCGA-CN-6024-01	WXS	WXS	WXS
+TCGA-KU-A6H7-01	WXS	WXS	WXS
+TCGA-CR-7364-01	WXS	WXS	WXS
+TCGA-CN-6011-01	WXS	WXS	WXS
+TCGA-CN-4726-01	WXS	WXS	WXS
+TCGA-UF-A71B-01	WXS	WXS	WXS
+TCGA-CR-7383-01	WXS	WXS	WXS
+TCGA-CQ-A4C6-01	WXS	WXS	WXS
+TCGA-BB-4223-01	WXS	WXS	WXS
+TCGA-CV-6935-01	WXS	WXS	WXS
+TCGA-QK-A6IJ-01	WXS	WXS	WXS
+TCGA-T3-A92N-01	WXS	WXS	WXS
+TCGA-HD-7754-01	WXS	WXS	WXS
+TCGA-CN-A49C-01	WXS	WXS	WXS
+TCGA-CV-A6K1-01	WXS	WXS	WXS
+TCGA-P3-A6T0-01	WXS	WXS	WXS
+TCGA-P3-A6T6-01	WXS	WXS	WXS
+TCGA-CV-6941-01	WXS	WXS	WXS
+TCGA-CN-4735-01	WXS	WXS	WXS
+TCGA-UF-A7JH-01	WXS	WXS	WXS
+TCGA-DQ-7593-01	WXS	WXS	WXS
+TCGA-CV-7104-01	WXS	WXS	WXS
+TCGA-UF-A7JC-01	WXS	WXS	WXS
+TCGA-TN-A7HI-01	WXS	WXS	WXS
+TCGA-BB-4225-01	WXS	WXS	WXS
+TCGA-CQ-A4CI-01	WXS	WXS	WXS
+TCGA-CR-6477-01	WXS	WXS	WXS
+TCGA-HD-A4C1-01	WXS	WXS	WXS
+TCGA-CN-5361-01	WXS	NA	WXS
+TCGA-CN-6013-01	WXS	WXS	WXS
+TCGA-BB-A5HY-01	WXS	WXS	WXS
+TCGA-CN-4739-01	WXS	WXS	WXS
+TCGA-CN-A498-01	WXS	WXS	WXS
+TCGA-D6-A4Z9-01	WXS	WXS	WXS
+TCGA-BB-A6UM-01	WXS	WXS	WXS
+TCGA-BA-A6DF-01	WXS	WXS	WXS
+TCGA-D6-6827-01	WXS	WXS	WXS
+TCGA-QK-A6IH-01	WXS	WXS	WXS
+TCGA-CV-5442-01	WXS	WXS	WXS
+TCGA-BA-A4IF-01	WXS	WXS	WXS
+TCGA-F7-A61V-01	WXS	WXS	WXS
+TCGA-BA-4078-01	WXS	WXS	WXS
+TCGA-BA-6871-01	WXS	WXS	WXS
+TCGA-CN-5370-01	WXS	WXS	WXS
+TCGA-CN-6017-01	WXS	WXS	WXS
+TCGA-IQ-A61G-01	WXS	WXS	WXS
+TCGA-CN-6995-01	WXS	WXS	WXS
+TCGA-CR-7397-01	WXS	WXS	WXS
+TCGA-CN-A640-01	WXS	WXS	WXS
+TCGA-UP-A6WW-01	WXS	WXS	WXS
+TCGA-CR-7370-01	WXS	WXS	WXS
+TCGA-CV-7411-01	WXS	WXS	WXS
+TCGA-IQ-7630-01	WXS	WXS	WXS
+TCGA-BA-A6DB-01	WXS	WXS	WXS
+TCGA-CN-6023-01	WXS	WXS	WXS
+TCGA-CN-6021-01	WXS	WXS	WXS
+TCGA-CN-A63W-01	WXS	WXS	WXS
+TCGA-CN-4727-01	WXS	WXS	WXS
+TCGA-QK-A8ZA-01	WXS	WXS	WXS
+TCGA-DQ-7589-01	WXS	WXS	WXS
+TCGA-CN-A63V-01	WXS	WXS	WXS
+TCGA-T2-A6X2-01	WXS	WXS	WXS
+TCGA-CV-7415-01	WXS	WXS	WXS
+TCGA-BA-5151-01	WXS	WXS	WXS
+TCGA-UF-A7JO-01	WXS	WXS	WXS
+TCGA-CN-5359-01	WXS	WXS	WXS
+TCGA-CN-A63U-01	WXS	WXS	WXS
+TCGA-CV-5978-01	WXS	WXS	WXS
+TCGA-D6-8568-01	WXS	WXS	WXS
+TCGA-HD-8314-01	WXS	WXS	WXS
+TCGA-CV-7177-01	WXS	WXS	WXS
+TCGA-CV-7446-01	WXS	NA	WXS
+TCGA-F7-A623-01	WXS	WXS	WXS
+TCGA-CV-5440-01	WXS	WXS	WXS
+TCGA-CV-7428-01	WXS	WXS	WXS
+TCGA-CV-6953-01	WXS	WXS	WXS
+TCGA-HD-8224-01	WXS	WXS	WXS
+TCGA-HD-7831-01	WXS	WXS	WXS
+TCGA-IQ-A6SH-01	WXS	WXS	WXS
+TCGA-KU-A6H8-01	WXS	WXS	WXS
+TCGA-CV-7101-01	WXS	WXS	WXS
+TCGA-HD-A633-01	WXS	WXS	WXS
+TCGA-CR-6473-01	WXS	WXS	WXS
+TCGA-QK-A8Z8-01	WXS	WXS	WXS
+TCGA-CN-5365-01	WXS	WXS	WXS
+TCGA-MT-A7BN-01	WXS	WXS	WXS
+TCGA-CR-7391-01	WXS	WXS	WXS
+TCGA-CQ-5326-01	WXS	WXS	WXS
+TCGA-BA-4074-01	WXS	WXS	WXS
+TCGA-CN-4730-01	WXS	WXS	WXS
+TCGA-UF-A7JK-01	WXS	WXS	WXS
+TCGA-KU-A66T-01	WXS	WXS	WXS
+TCGA-F7-8489-01	WXS	WXS	WXS
+TCGA-CV-6956-01	WXS	WXS	WXS
+TCGA-CN-5369-01	WXS	WXS	WXS
+TCGA-WA-A7H4-01	WXS	WXS	WXS
+TCGA-DQ-5631-01	WXS	WXS	WXS
+TCGA-CQ-6227-01	WXS	WXS	WXS
+TCGA-HL-7533-01	WXS	WXS	WXS
+TCGA-CV-A45Z-01	WXS	WXS	WXS
+TCGA-CN-4740-01	WXS	WXS	WXS
+TCGA-BA-A6DL-01	WXS	WXS	WXS
+TCGA-CV-5434-01	WXS	WXS	WXS
+TCGA-CR-7369-01	WXS	WXS	WXS
+TCGA-CX-7086-01	WXS	WXS	WXS
+TCGA-F7-A61S-01	WXS	WXS	WXS
+TCGA-BA-A6DI-01	WXS	WXS	WXS
+TCGA-MZ-A7D7-01	WXS	WXS	WXS
+TCGA-CN-6988-01	WXS	WXS	WXS
+TCGA-CQ-6223-01	WXS	WXS	WXS
+TCGA-CR-7365-01	WXS	WXS	WXS
+TCGA-QK-A6IG-01	WXS	WXS	WXS
+TCGA-CN-A6V1-01	WXS	WXS	WXS
+TCGA-CV-7183-01	WXS	WXS	WXS
+TCGA-CV-A45T-01	WXS	WXS	WXS
+TCGA-P3-A5QF-01	WXS	WXS	WXS
+TCGA-CV-7261-01	WXS	WXS	WXS
+TCGA-CN-A6V7-01	WXS	WXS	WXS
+TCGA-CV-6934-01	WXS	WXS	WXS
+TCGA-CR-7404-01	WXS	WXS	WXS
+TCGA-CR-6478-01	WXS	WXS	WXS
+TCGA-CQ-7072-01	WXS	WXS	WXS
+TCGA-UF-A7J9-01	WXS	WXS	WXS
+TCGA-P3-A6T3-01	WXS	WXS	WXS
+TCGA-CV-7423-01	WXS	WXS	WXS
+TCGA-CR-6492-01	WXS	WXS	WXS
+TCGA-BA-5555-01	WXS	WXS	WXS
+TCGA-CV-A468-01	WXS	WXS	WXS
+TCGA-C9-A480-01	WXS	WXS	WXS
+TCGA-RS-A6TO-01	WXS	WXS	WXS
+TCGA-CV-6938-01	WXS	WXS	WXS
+TCGA-IQ-A61L-01	WXS	WXS	WXS
+TCGA-CN-4734-01	WXS	NA	WXS
+TCGA-CV-A6JO-01	WXS	WXS	WXS
+TCGA-BB-4224-01	WXS	WXS	WXS
+TCGA-CN-A49B-01	WXS	WXS	WXS
+TCGA-RS-A6TP-01	WXS	WXS	WXS
+TCGA-CR-6474-01	WXS	WXS	WXS
+TCGA-CQ-A4CB-01	WXS	WXS	WXS
+TCGA-CV-7099-01	WXS	WXS	WXS
+TCGA-D6-A6EM-01	WXS	WXS	WXS
+TCGA-CN-A499-01	WXS	WXS	WXS
+TCGA-CR-7379-01	WXS	WXS	WXS
+TCGA-QK-A6V9-01	WXS	WXS	WXS
+TCGA-CR-6482-01	WXS	WXS	WXS
+TCGA-CN-5356-01	WXS	WXS	WXS
+TCGA-CV-A6JT-01	WXS	WXS	WXS
+TCGA-CV-7406-01	WXS	WXS	WXS
+TCGA-D6-6826-01	WXS	WXS	WXS
+TCGA-CR-7402-01	WXS	WXS	WXS
+TCGA-BA-5559-01	WXS	WXS	WXS
+TCGA-CQ-7069-01	WXS	WXS	WXS
+TCGA-CN-5360-01	WXS	WXS	WXS
+TCGA-CV-6936-01	WXS	WXS	WXS
+TCGA-CV-7095-01	WXS	WXS	WXS
+TCGA-IQ-A61E-01	WXS	WXS	WXS
+TCGA-4P-AA8J-01	WXS	WXS	WXS
+TCGA-CV-A6JZ-01	WXS	WXS	WXS
+TCGA-CR-5247-01	WXS	WXS	WXS
+TCGA-CN-4723-01	WXS	WXS	WXS
+TCGA-BA-A6DG-01	WXS	WXS	WXS
+TCGA-D6-A6EK-01	WXS	WXS	WXS
+TCGA-CQ-6219-01	WXS	NA	WXS
+TCGA-QK-A6VB-01	WXS	WXS	WXS
+TCGA-CV-6433-01	WXS	WXS	WXS
+TCGA-CR-7389-01	WXS	WXS	WXS
+TCGA-CN-A63T-01	WXS	WXS	WXS
+TCGA-CQ-7067-01	WXS	WXS	WXS
+TCGA-CR-7371-01	WXS	WXS	WXS
+TCGA-F7-A50I-01	WXS	WXS	WXS
+TCGA-CV-7253-01	WXS	WXS	WXS
+TCGA-CV-5973-01	WXS	WXS	WXS
+TCGA-CV-A463-01	WXS	WXS	WXS
+TCGA-CV-7247-01	WXS	WXS	WXS
+TCGA-CV-7410-01	WXS	WXS	WXS
+TCGA-CN-5358-01	WXS	WXS	WXS
+TCGA-CV-6943-01	WXS	WXS	WXS
+TCGA-DQ-7591-01	WXS	WXS	WXS
+TCGA-BB-4228-01	WXS	WXS	WXS
+TCGA-CR-7385-01	WXS	WXS	WXS
+TCGA-D6-8569-01	WXS	WXS	WXS
+TCGA-CV-7432-01	WXS	WXS	WXS
+TCGA-CQ-5330-01	WXS	WXS	WXS
+TCGA-D6-6515-01	WXS	WXS	WXS
+TCGA-IQ-A61I-01	WXS	WXS	WXS
+TCGA-CR-5243-01	WXS	WXS	WXS
+TCGA-MT-A51W-01	WXS	WXS	WXS
+TCGA-CV-5439-01	WXS	WXS	WXS
+TCGA-DQ-7588-01	WXS	WXS	WXS
+TCGA-BB-7866-01	WXS	WXS	WXS
+TCGA-HD-7832-01	WXS	WXS	WXS
+TCGA-CV-7434-01	WXS	WXS	WXS
+TCGA-HD-A6I0-01	WXS	WXS	WXS
+TCGA-CV-7089-01	WXS	WXS	WXS
+TCGA-CV-5444-01	WXS	WXS	WXS
+TCGA-CN-6997-01	WXS	WXS	WXS
+TCGA-CV-5979-01	WXS	WXS	WXS
+TCGA-BB-A6UO-01	WXS	WXS	WXS
+TCGA-CR-6472-01	WXS	WXS	WXS
+TCGA-CQ-5334-01	WXS	WXS	WXS
+TCGA-QK-A8Z9-01	WXS	WXS	WXS
+TCGA-CV-7236-01	WXS	WXS	WXS
+TCGA-H7-8501-01	WXS	WXS	WXS
+TCGA-CR-7390-01	WXS	WXS	WXS
+TCGA-CN-5364-01	WXS	WXS	WXS
+TCGA-IQ-7632-01	WXS	WXS	WXS
+TCGA-HD-7753-01	WXS	WXS	WXS
+TCGA-BA-A4IH-01	WXS	WXS	WXS
+TCGA-CR-7395-01	WXS	WXS	WXS
+TCGA-CN-A6UY-01	WXS	WXS	WXS
+TCGA-CV-5432-01	WXS	WXS	WXS
+TCGA-CR-7398-01	WXS	WXS	WXS
+TCGA-CR-7367-01	WXS	WXS	WXS
+TCGA-P3-A6T4-01	WXS	WXS	WXS
+TCGA-CV-6962-01	WXS	WXS	WXS
+TCGA-CN-6022-01	WXS	WXS	WXS
+TCGA-MT-A67F-01	WXS	WXS	WXS
+TCGA-HD-8635-01	WXS	WXS	WXS
+TCGA-CR-7399-01	WXS	WXS	WXS
+TCGA-CV-7438-01	WXS	WXS	WXS
+TCGA-P3-A6T8-01	WXS	WXS	WXS
+TCGA-UF-A7JT-01	WXS	WXS	WXS
+TCGA-CQ-6222-01	WXS	NA	WXS
+TCGA-BB-7871-01	WXS	WXS	WXS
+TCGA-KU-A66S-01	WXS	WXS	WXS
+TCGA-D6-A6ES-01	WXS	WXS	WXS
+TCGA-CV-A45V-01	WXS	WXS	WXS
+TCGA-CV-6436-01	WXS	WXS	WXS
+TCGA-CV-7103-01	WXS	WXS	WXS
+TCGA-UF-A71E-01	WXS	WXS	WXS
+TCGA-CN-4741-01	WXS	WXS	WXS
+TCGA-QK-A8Z7-01	WXS	WXS	WXS
+TCGA-CV-7409-01	WXS	WXS	WXS
+TCGA-QK-A6IF-01	WXS	WXS	WXS
+TCGA-CV-7243-01	WXS	WXS	WXS
+TCGA-CV-A45U-01	WXS	WXS	WXS
+TCGA-P3-A6T7-01	WXS	WXS	WXS
+TCGA-CV-6952-01	WXS	WXS	WXS
+TCGA-CQ-5324-01	WXS	WXS	WXS
+TCGA-UF-A719-01	WXS	WXS	WXS
+TCGA-BA-4076-01	WXS	WXS	WXS
+TCGA-BA-6873-01	WXS	WXS	WXS
+TCGA-CV-A6K2-01	WXS	WXS	WXS
+TCGA-MT-A51X-01	WXS	WXS	WXS
+TCGA-BA-5152-01	WXS	WXS	WXS
+TCGA-CN-4725-01	WXS	WXS	WXS
+TCGA-CV-7097-01	WXS	WXS	WXS
+TCGA-CV-A45P-01	WXS	WXS	WXS
+TCGA-CV-7422-01	WXS	WXS	WXS
+TCGA-CQ-A4CE-01	WXS	WXS	WXS
+TCGA-CQ-6228-01	WXS	WXS	WXS
+TCGA-QK-AA3J-01	WXS	WXS	WXS
+TCGA-CR-6487-01	WXS	WXS	WXS
+TCGA-T2-A6WZ-01	WXS	WXS	WXS
+TCGA-CR-6493-01	WXS	WXS	WXS
+TCGA-IQ-A61J-01	WXS	WXS	WXS
+TCGA-IQ-A61H-01	WXS	WXS	WXS
+TCGA-CN-4738-01	WXS	WXS	WXS
+TCGA-D6-6824-01	WXS	WXS	WXS
+TCGA-UF-A7JA-01	WXS	WXS	WXS
+TCGA-CV-6954-01	WXS	WXS	WXS
+TCGA-CV-A6JU-01	WXS	WXS	WXS
+TCGA-DQ-5625-01	WXS	WXS	WXS
+TCGA-C9-A47Z-01	WXS	WXS	WXS
+TCGA-CR-7380-01	WXS	WXS	WXS
+TCGA-CV-A6JN-01	WXS	WXS	WXS
+TCGA-CV-A45X-01	WXS	WXS	WXS
+TCGA-BA-A6DJ-01	WXS	WXS	WXS
+TCGA-CV-5436-01	WXS	WXS	WXS
+TCGA-CQ-7065-01	WXS	WXS	WXS
+TCGA-BA-5558-01	WXS	WXS	WXS
+TCGA-CN-4729-01	WXS	WXS	WXS
+TCGA-CV-7424-01	WXS	WXS	WXS
+TCGA-HD-7229-01	WXS	WXS	WXS
+TCGA-CN-A6V6-01	WXS	WXS	WXS
+TCGA-BB-8601-01	WXS	WXS	WXS
+TCGA-QK-AA3K-01	WXS	WXS	WXS
+TCGA-CV-7407-01	WXS	WXS	WXS
+TCGA-CV-7248-01	WXS	WXS	WXS
+TCGA-T3-A92M-01	WXS	WXS	WXS
+TCGA-CN-A6V3-01	WXS	WXS	WXS
+TCGA-QK-A6VC-01	WXS	WXS	WXS
+TCGA-T2-A6X0-01	WXS	WXS	WXS
+TCGA-HD-A634-01	WXS	WXS	WXS
+TCGA-DQ-7594-01	WXS	WXS	WXS
+TCGA-CV-7178-01	WXS	WXS	WXS
+TCGA-UF-A71A-01	WXS	WXS	WXS
+TCGA-CV-7414-01	WXS	WXS	WXS
+TCGA-CR-7388-01	WXS	WXS	WXS
+TCGA-DQ-7590-01	WXS	WXS	WXS
+TCGA-CV-7252-01	WXS	WXS	WXS
+TCGA-D6-A4ZB-01	WXS	WXS	WXS
+TCGA-CQ-7063-01	WXS	WXS	WXS
+TCGA-BA-6868-01	WXS	WXS	WXS
+TCGA-CV-6942-01	WXS	WXS	WXS
+TCGA-CV-5441-01	WXS	WXS	WXS
+TCGA-CN-4736-01	WXS	WXS	WXS
+TCGA-CQ-5331-01	WXS	WXS	WXS
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+TCGA-H7-8502-01	NA	WXS	NA
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+TCGA-HD-7917-01	NA	WXS	NA
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+TCGA-CR-7393-01	NA	WXS	NA
+TCGA-DQ-7595-01	NA	WXS	NA
+TCGA-CN-4722-01	NA	WXS	NA
+TCGA-BB-7864-01	NA	WXS	NA

data_genetic_ancestry.txt

@@ -0,0 +1,6 @@
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CGA-CV-7438-01	TCGA-CV-7440-01	TCGA-CV-A45O-01	TCGA-CV-A45P-01	TCGA-CV-A45Q-01	TCGA-CV-A45R-01	TCGA-CV-A45T-01	TCGA-CV-A45U-01	TCGA-CV-A45V-01	TCGA-CV-A45W-01	TCGA-CV-A45X-01	TCGA-CV-A45Y-01	TCGA-CV-A45Z-01	TCGA-CV-A460-01	TCGA-CV-A461-01	TCGA-CV-A464-01	TCGA-CV-A465-01	TCGA-CV-A468-01	TCGA-CV-A6JD-01	TCGA-CV-A6JE-01	TCGA-CV-A6JM-01	TCGA-CV-A6JN-01	TCGA-CV-A6JO-01	TCGA-CV-A6JT-01	TCGA-CV-A6JU-01	TCGA-CV-A6JY-01	TCGA-CV-A6JZ-01	TCGA-CV-A6K0-01	TCGA-CV-A6K1-01	TCGA-CV-A6K2-01	TCGA-CX-7085-01	TCGA-CX-7086-01	TCGA-CX-7219-01	TCGA-CX-A4AQ-01	TCGA-D6-6515-01	TCGA-D6-6516-01	TCGA-D6-6517-01	TCGA-D6-6823-01	TCGA-D6-6824-01	TCGA-D6-6825-01	TCGA-D6-6826-01	TCGA-D6-6827-01	TCGA-D6-8568-01	TCGA-D6-8569-01	TCGA-D6-A4Z9-01	TCGA-D6-A4ZB-01	TCGA-D6-A6EK-01	TCGA-D6-A6EM-01	TCGA-D6-A6EN-01	TCGA-D6-A6EO-01	TCGA-D6-A6EP-01	TCGA-D6-A6EQ-01	TCGA-D6-A6ES-01	TCGA-D6-A74Q-01	TCGA-DQ-5624-01	TCGA-DQ-5625-01	TCGA-DQ-5629-01	TCGA-DQ-5630-01	TCGA-DQ-5631-01	TCGA-DQ-7588-01	TCGA-DQ-7589-01	TCGA-DQ-7590-01	TCGA-DQ-7591-01	TCGA-DQ-7592-01	TCGA-DQ-7593-01	TCGA-DQ-7594-01	TCGA-DQ-7595-01	TCGA-DQ-7596-01	TCGA-F7-7848-01	TCGA-F7-8298-01	TCGA-F7-8489-01	TCGA-F7-A50G-01	TCGA-F7-A61S-01	TCGA-F7-A61V-01	TCGA-F7-A61W-01	TCGA-F7-A620-01	TCGA-F7-A622-01	TCGA-F7-A623-01	TCGA-F7-A624-01	TCGA-H7-7774-01	TCGA-H7-8501-01	TCGA-H7-8502-01	TCGA-H7-A6C4-01	TCGA-H7-A6C5-01	TCGA-H7-A76A-01	TCGA-HD-7229-01	TCGA-HD-7753-01	TCGA-HD-7754-01	TCGA-HD-7832-01	TCGA-HD-7917-01	TCGA-HD-8314-01	TCGA-HD-8634-01	TCGA-HD-8635-01	TCGA-HD-A4C1-01	TCGA-HD-A633-01	TCGA-HD-A634-01	TCGA-HD-A6HZ-01	TCGA-HD-A6I0-01	TCGA-HL-7533-01	TCGA-IQ-7630-01	TCGA-IQ-7631-01	TCGA-IQ-7632-01	TCGA-IQ-A61E-01	TCGA-IQ-A61G-01	TCGA-IQ-A61H-01	TCGA-IQ-A61I-01	TCGA-IQ-A61J-01	TCGA-IQ-A61K-01	TCGA-IQ-A61L-01	TCGA-IQ-A61O-01	TCGA-IQ-A6SG-01	TCGA-IQ-A6SH-01	TCGA-KU-A66S-01	TCGA-KU-A66T-01	TCGA-KU-A6H7-01	TCGA-KU-A6H8-01	TCGA-MT-A51W-01	TCGA-MT-A51X-01	TCGA-MT-A67D-01	TCGA-MT-A67F-01	TCGA-MT-A67G-01	TCGA-MT-A7BN-01	TCGA-MZ-A6I9-01	TCGA-MZ-A7D7-01	TCGA-P3-A5Q6-01	TCGA-P3-A5QA-01	TCGA-P3-A5QE-01	TCGA-P3-A5QF-01	TCGA-P3-A6SW-01	TCGA-P3-A6SX-01	TCGA-P3-A6T0-01	TCGA-P3-A6T2-01	TCGA-P3-A6T3-01	TCGA-P3-A6T4-01	TCGA-P3-A6T5-01	TCGA-P3-A6T6-01	TCGA-P3-A6T7-01	TCGA-P3-A6T8-01	TCGA-QK-A652-01	TCGA-QK-A6IF-01	TCGA-QK-A6IG-01	TCGA-QK-A6IH-01	TCGA-QK-A6II-01	TCGA-QK-A6V9-01	TCGA-QK-A6VB-01	TCGA-QK-A6VC-01	TCGA-QK-A8Z7-01	TCGA-QK-A8Z8-01	TCGA-QK-A8Z9-01	TCGA-QK-A8ZA-01	TCGA-QK-A8ZB-01	TCGA-QK-AA3J-01	TCGA-QK-AA3K-01	TCGA-RS-A6TO-01	TCGA-RS-A6TP-01	TCGA-T2-A6WX-01	TCGA-T2-A6WZ-01	TCGA-T2-A6X0-01	TCGA-T2-A6X2-01	TCGA-T3-A92N-01	TCGA-TN-A7HI-01	TCGA-TN-A7HJ-01	TCGA-TN-A7HL-01	TCGA-UF-A718-01	TCGA-UF-A71A-01	TCGA-UF-A71B-01	TCGA-UF-A71D-01	TCGA-UF-A7J9-01	TCGA-UF-A7JA-01	TCGA-UF-A7JC-01	TCGA-UF-A7JD-01	TCGA-UF-A7JF-01	TCGA-UF-A7JJ-01	TCGA-UF-A7JK-01	TCGA-UF-A7JO-01	TCGA-UF-A7JS-01	TCGA-UF-A7JT-01	TCGA-UF-A7JV-01	TCGA-WA-A7GZ-01	TCGA-WA-A7H4-01	TCGA-MZ-A5BI-01
+EUR	Admixture % EUR	0.19096	0.950315	0.981492	0.99996	0.99807	0.973053	0.934714	0.180401	0.994847	0.531529	0.994701	0.912053	0.094015	0.993001	0.153059	0.982094	0.202381	0.98225	0.97883	0.999953	0.988786	0.980807	0.169952	0.98322	0.076604	0.994743	0.985803	0.987009	0.341965	0.146539	0.995782	0.017596	0.291657	0.994421	0.979438	0.813139	0.879741	0.912476	0.997754	0.927135	0.990432	0.99996	0.99996	0.249103	0.98745	0.188626	0.988733	0.981815	0.989842	0.97439	0.983059	0.025802	0.016884	0.959547	0.986397	0.961522	0.970123	0.994444	0.913391	0.986636	0.986869	0.86657	0.976157	0.976033	0.990205	0.993685	0.994764	0.99996	0.985206	0.991074	0.983407	0.99996	0.112056	0.977481	0.988376	0.990215	0.888381	0.331793	0.673488	0.956572	0.90188	0.99996	0.990861	0.925061	0.989097	0.96775	0.987129	0.997936	0.99996	0.988072	0.95708	0.981786	0.180683	0.992164	0.953052	0.98668	0.99996	0.972821	0.876629	0.971076	0.990467	0.992509	0.991252	0.955826	0.98823	0.994254	0.979978	0.920232	0.984923	0.99996	0.973227	0.988516	0.958479	0.995275	0.992811	0.987645	0.972616	0.984537	0.985848	0.969966	0.965862	0.976205	0.952191	0.981499	0.939552	0.999491	0.979915	0.076244	0.861593	0.988885	0.999768	0.986165	0.907226	0.118425	0.961248	0.999295	0.989892	0.995923	0.935063	0.99996	0.988725	0.985126	0.981999	0.9489	0.926765	0.951083	0.075004	0.961295	0.930047	0.998259	0.99606	0.984567	0.161843	0.971729	0.97508	0.956978	0.996096	0.991224	0.996663	0.018364	0.994864	0.992849	0.171226	0.933948	0.941822	0.993323	0.996318	0.82411	0.992975	0.999021	0.99854	0.986777	0.99996	0.997033	0.312557	0.203481	0.989577	0.903536	0.324419	0.993106	0.276682	0.995546	0.996328	0.904645	0.986062	0.99996	0.99995	0.928154	0.992076	0.99996	0.989394	0.980838	0.997648	0.950155	0.99996	0.992046	0.988147	0.920092	0.992545	0.16833	0.99996	0.991172	0.999954	0.981762	0.996334	0.979479	0.95712	0.996619	0.988337	0.96423	0.974818	0.996621	0.99092	0.359846	0.990643	0.68518	0.99996	0.990613	0.860059	0.897602	0.081476	0.225574	0.978709	0.3234	0.99996	0.982987	0.990941	0.990518	0.069739	0.799406	0.974429	0.991859	0.973164	0.278726	0.984669	0.9142	0.99996	0.994485	0.986695	0.959769	0.99996	0.990639	0.99996	0.56536	0.982541	0.99996	0.981033	0.989868	0.96784	0.994889	0.984924	0.203555	0.994288	0.621387	0.992932	0.340593	0.995657	0.392698	0.992061	0.911514	0.935588	0.655389	0.947477	0.988632	0.99996	0.993108	0.998311	0.994508	0.984939	0.921407	0.99448	0.989629	0.985672	0.987126	0.984656	0.991539	0.987121	0.975391	0.999736	0.990511	0.095818	0.999951	0.047693	0.13854	0.930825	0.922951	0.997498	0.170061	0.994276	0.996739	0.157542	0.990113	0.985819	0.989043	0.993004	0.874681	0.995384	0.985851	0.990567	0.995467	0.009365	0.996434	0.998348	0.993771	0.942832	0.99996	0.912564	0.912796	0.99996	0.985632	0.965168	0.996513	0.982247	0.992695	0.963052	0.965848	0.783863	0.990104	0.98557	0.939149	0.997784	0.775123	0.622879	0.995597	0.952233	0.99996	0.989456	0.983335	0.569549	0.99996	0.997524	0.962561	0.987567	0.991324	0.979481	0.952085	0.991622	0.99996	0.998358	0.913775	0.949365	0.976842	0.149439	0.086607	0.929389	0.983221	0.979157	0.987546	0.981208	0.975984	0.982934	0.981061	0.907863	0.99089	0.921815	0.980455	0.969123	0.987739	0.996529	0.989827	0.981736	0.976964	0.988192	0.974676	0.951077	0.98637	0.887046	0.9514	0.950139	0.95936	0.987287	0.941447	0.99302	0.956713	0.932055	0.986216	0.993541	0.991134	0.995088	0.974357	0.950615	0.828643	0.931611	0.970233	0.946565	0.01927	0.968109	0.945652	0.950722	0.956377	0.996678	0.994384	0.979089	0.977603	0.968391	0.990481	0.989065	0.153011	0.998917	0.998544	0.985792	0.986411	0.993572	0.994488	0.088499	0.99249	0.972192	0.995487	0.990953	0.999957	0.922715	0.993528	0.204602	0.986169	0.891041	0.807505	0.054711	0.959596	0.903492	0.538684	0.398371	0.710166	0.222557	0.956303	0.926576	0.994308	0.979837	0.967523	0.916583	0.915203	0.951577	0.967349	0.993498	0.998888	0.992847	0.932723	0.640481	0.962195	0.983727	0.977747	0.956126	0.907577	0.97258	0.92309	0.92924	0.992414	0.954488	0.887044	0.986005	0.945373	0.998769	0.99996	0.874184	0.995624	0.990933	0.990794	0.280229	0.076733	0.24574	0.085489	0.19499	0.127081	0.055538	0.129084	0.990146	0.951963	0.934587	0.980342	0.992058	0.917914	0.145762	0.99467	0.978887	0.963999	0.719378	0.942521	0.708525	0.700885	0.857847	0.993147	0.828639	0.457409	0.799125	0.481149	0.863332	0.982486	0.744396	0.86771	0.955294	0.997479	0.951925	0.757375
+AFR	Admixture % AFR	0.795067	0.032778	0.012064	1.00E-05	1.00E-05	0.024595	0.044513	0.795278	0.005123	0.384484	0.000765	0.01922	0.890126	1.00E-05	0.814966	0.013207	0.024097	0.006273	0.009805	1.00E-05	0.008068	0.019162	0.823374	0.007582	0.914575	0.004329	0.00953	0.006997	0.650549	0.00503	0.002634	0.938573	0.69009	1.00E-05	0.001617	0.132981	0.092536	0.063496	0.002183	0.017366	0.003543	1.00E-05	1.00E-05	1.00E-05	0.004225	0.787896	0.00768	0.01664	0.00722	0.013418	1.00E-05	0.008781	1.00E-05	0.023835	0.004283	0.021788	0.014637	0.005125	0.059778	0.004211	0.003903	0.09223	0.013866	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.006456	1.00E-05	0.011633	1.00E-05	0.842758	0.01171	0.001618	0.005078	0.065179	0.655751	0.143839	0.011785	0.070304	1.00E-05	1.00E-05	0.049482	1.00E-05	0.018573	0.009371	1.00E-05	1.00E-05	1.00E-05	0.00524	1.00E-05	0.798239	1.00E-05	0.015091	1.00E-05	1.00E-05	0.021037	0.090909	0.018425	1.00E-05	1.00E-05	0.003427	0.033379	1.00E-05	0.005716	0.005205	0.063604	0.006813	1.00E-05	0.013591	1.00E-05	0.022199	1.00E-05	1.00E-05	0.007188	0.019742	0.010002	0.00519	0.01526	0.008545	1.00E-05	0.02008	0.001557	0.01311	1.00E-05	1.00E-05	1.00E-05	0.106262	0.002092	0.000202	0.000994	0.020137	0.864611	0.006655	1.00E-05	0.006088	0.004046	0.01264	1.00E-05	0.00936	0.010402	1.00E-05	0.035383	0.009441	0.03953	0.006584	0.017352	0.01378	1.00E-05	0.00042	0.005938	1.00E-05	1.00E-05	0.018442	0.038	1.00E-05	0.007257	0.002605	0.026499	0.004493	0.005484	0.817203	0.048019	0.04112	1.00E-05	1.00E-05	0.134898	0.004982	0.000949	1.00E-05	0.003217	1.00E-05	0.001994	0.679679	0.010283	1.00E-05	0.011899	0.66012	0.00209	0.708039	1.00E-05	1.00E-05	0.067867	0.010917	1.00E-05	1.00E-05	0.050779	1.00E-05	1.00E-05	0.008911	0.0064	1.00E-05	0.022404	1.00E-05	0.002775	0.006849	0.030269	0.007424	0.818909	1.00E-05	0.00659	1.00E-05	0.009651	0.00363	0.010873	0.030609	1.00E-05	0.004795	0.016073	0.014747	1.00E-05	0.002158	0.631839	0.007593	0.026896	1.00E-05	0.005108	0.103861	0.073464	0.897355	0.763189	0.00798	0.046067	1.00E-05	0.011794	0.007811	1.00E-05	0.902429	0.034629	1.00E-05	0.003514	1.00E-05	0.042234	0.006361	0.052663	1.00E-05	0.002515	0.007409	0.02823	1.00E-05	0.003701	1.00E-05	0.06517	0.008926	1.00E-05	0.014068	0.00779	0.003478	0.000904	0.007025	0.779397	0.003851	0.064721	0.004894	0.59628	0.001862	0.082157	1.00E-05	0.04322	0.047036	0.051898	0.03591	0.007562	1.00E-05	0.003532	1.00E-05	1.00E-05	1.00E-05	0.060409	0.004933	0.004139	0.000348	0.011041	0.009873	0.003754	0.00802	0.009971	1.00E-05	0.004987	0.882953	1.00E-05	0.947561	0.853747	0.009987	0.032203	1.00E-05	0.735322	0.003963	0.000753	0.81696	0.006011	0.003341	1.00E-05	1.00E-05	0.069372	0.002241	0.00493	1.00E-05	1.00E-05	1.00E-05	0.00181	1.00E-05	1.00E-05	0.042893	1.00E-05	0.03182	0.062393	1.00E-05	1.00E-05	0.017284	0.003457	0.010098	1.00E-05	0.028315	0.025404	0.035624	0.009866	0.014397	0.047072	1.00E-05	0.063892	0.055596	0.002839	0.009784	1.00E-05	0.008477	0.00251	0.050085	1.00E-05	1.00E-05	0.03169	0.003355	1.00E-05	0.017982	0.032828	1.00E-05	1.00E-05	1.00E-05	0.064109	0.042579	0.020241	0.832076	0.89609	0.055081	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.003772	1.00E-05	0.06258	1.00E-05	0.035001	0.007105	0.017544	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.006942	1.00E-05	0.012066	0.030461	0.00966	0.08552	0.036583	1.00E-05	0.010903	1.00E-05	0.044857	0.004489	0.012003	0.054146	0.013754	0.00198	0.00656	1.00E-05	1.00E-05	1.00E-05	0.030087	1.00E-05	1.00E-05	0.039583	0.002785	0.011497	0.026906	0.010987	0.014576	1.00E-05	1.00E-05	0.006059	0.016892	0.022805	0.004295	0.000195	0.829926	1.00E-05	1.00E-05	0.007414	0.008607	1.00E-05	0.002599	0.896821	0.00748	0.017074	1.00E-05	0.007794	1.00E-05	0.046647	1.00E-05	0.786558	0.0035	0.052674	0.137462	0.934928	0.012937	0.029703	0.392657	0.137042	0.097313	0.77405	0.020452	0.054081	1.00E-05	1.00E-05	0.012082	0.061152	0.06767	0.015567	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.045213	0.027943	0.028597	0.012215	0.012574	0.034109	0.073194	0.023715	0.049981	0.053182	0.007347	0.039944	0.090303	0.008981	0.015942	1.00E-05	1.00E-05	0.009792	1.00E-05	0.009037	0.002834	0.701645	0.901946	0.746214	0.902421	0.795538	0.864122	0.930991	0.865445	0.004683	0.014938	0.056544	0.008832	0.007912	0.024021	0.84858	1.00E-05	0.016329	0.023266	0.189221	0.040225	0.222879	0.236886	0.050568	0.0033	0.078361	0.361188	0.106551	0.2948	0.048124	0.003572	0.205442	0.053635	0.035962	1.00E-05	0.028579	0.103756
+EAS	Admixture % EAS	0.009933	0.013479	0.002237	1.00E-05	1.70E-05	0.002331	0.016245	0.015958	1.00E-05	0.005539	1.10E-05	0.000359	0.004302	0.00383	0.017557	0.004634	0.681813	0.001088	0.005451	1.00E-05	1.00E-05	1.00E-05	0.004556	0.005958	0.007334	1.00E-05	0.001805	0.005974	0.007465	0.011133	0.001564	0.009893	0.01124	1.00E-05	1.00E-05	0.043632	0.027703	0.02176	4.40E-05	0.013221	0.003592	1.00E-05	1.00E-05	0.019621	0.008305	0.018306	0.002787	1.00E-05	1.50E-05	0.004223	0.009638	0.957282	0.971432	0.014804	1.00E-05	0.016187	0.013891	0.000411	0.021123	0.002066	1.00E-05	0.037288	0.006437	0.018497	0.002191	1.00E-05	0.000402	1.00E-05	0.005037	0.001257	1.00E-05	1.00E-05	0.035427	0.002528	1.00E-05	1.00E-05	0.023626	0.001341	1.00E-05	0.003735	0.019362	1.00E-05	0.005762	0.024097	1.00E-05	0.013656	0.00331	1.00E-05	1.00E-05	0.006892	0.005021	0.015998	0.011678	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.000905	0.026205	0.010412	1.00E-05	0.006691	0.005029	0.010775	1.00E-05	1.00E-05	0.007364	0.012976	0.001315	1.00E-05	0.007774	0.009809	0.019302	0.002015	0.003836	0.002	0.005662	0.002646	0.005238	0.003782	0.006194	0.008564	0.010085	0.003073	1.00E-05	1.00E-05	0.006942	0.069208	0.027581	0.006455	1.00E-05	0.004812	0.00944	0.014245	0.021806	1.00E-05	0.000736	1.00E-05	1.00E-05	1.00E-05	0.001895	0.001968	1.00E-05	0.011305	2.00E-05	0.009367	0.036058	1.00E-05	1.00E-05	1.00E-05	2.00E-05	0.009475	0.021685	0.009186	0.004985	0.005002	1.00E-05	1.00E-05	1.00E-05	0.955117	1.00E-05	0.001647	0.011551	0.015787	0.015154	1.60E-05	1.00E-05	0.038075	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.002606	0.026133	1.00E-05	1.00E-05	0.011143	1.00E-05	0.007789	0.004416	1.00E-05	0.021904	0.002637	1.00E-05	1.00E-05	0.021047	0.007894	1.00E-05	0.001449	0.005332	1.00E-05	0.008878	1.00E-05	0.001297	0.004984	0.016292	1.00E-05	0.00973	1.00E-05	1.00E-05	1.00E-05	0.008567	1.60E-05	0.009628	0.007434	0.000986	0.006848	0.007891	0.010416	0.003349	1.20E-05	1.00E-05	0.00064	0.014967	1.00E-05	0.002701	0.031115	0.028914	0.007679	0.002695	0.004047	0.018679	1.00E-05	0.001	1.00E-05	1.00E-05	0.021397	0.009727	0.017734	1.00E-05	0.004549	0.026018	0.008604	0.017473	1.00E-05	0.000205	1.00E-05	0.011982	1.00E-05	1.00E-05	1.00E-05	0.017481	0.008512	1.00E-05	0.00488	0.000891	0.002884	1.00E-05	1.00E-05	0.012008	0.001841	0.013743	1.00E-05	0.013367	1.00E-05	0.02707	0.007909	0.009378	0.017357	0.013622	0.01659	0.003786	1.00E-05	0.00334	0.001659	1.00E-05	0.001161	0.011218	0.000567	0.006212	1.00E-05	0.001813	0.003687	0.003504	0.004431	0.012489	0.000234	0.003093	0.015839	1.00E-05	0.004727	0.005248	0.01553	0.010914	0.002472	0.00935	1.00E-05	0.002488	0.019479	1.00E-05	1.00E-05	1.00E-05	0.002877	0.019368	1.00E-05	8.70E-05	0.004	1.00E-05	0.97648	0.001736	1.00E-05	0.002533	0.002077	1.00E-05	1.00E-05	0.020622	1.00E-05	1.00E-05	0.013973	1.00E-05	0.007635	0.005131	0.008613	0.003119	0.01552	1.00E-05	1.00E-05	0.013759	1.00E-05	0.005653	0.017871	0.001543	0.00783	1.00E-05	0.002038	0.002697	0.011637	1.00E-05	9.20E-05	0.003698	0.00453	0.004908	0.000404	0.012099	0.002419	1.00E-05	1.00E-05	0.01041	0.008036	1.00E-05	0.012441	0.015628	0.013674	0.008512	0.007472	0.010161	0.016211	0.021806	0.009063	0.003298	0.023453	0.004996	0.031187	0.008995	0.011784	0.007316	0.002921	0.006252	0.008707	0.010671	0.002888	0.01138	0.017065	0.003323	0.025505	0.011997	0.010273	0.00333	0.000336	0.011789	0.002471	0.014312	0.013779	1.00E-05	1.00E-05	0.002009	1.00E-05	0.014815	0.036852	0.110931	0.056176	0.027221	0.013832	0.975142	0.018586	0.021978	0.034503	0.018815	1.00E-05	0.005586	0.008585	0.005147	0.005806	0.003711	0.000167	0.01325	1.00E-05	1.00E-05	1.00E-05	0.004962	0.002427	1.00E-05	0.002237	1.00E-05	0.010708	1.00E-05	1.00E-05	1.30E-05	0.003626	1.00E-05	1.00E-05	0.003798	0.006291	0.008102	0.009347	0.002684	0.014699	0.043049	0.012213	0.014153	0.003373	0.012118	0.017949	1.00E-05	0.004305	0.020375	0.017967	0.013345	0.027274	0.019008	0.004356	1.00E-05	0.007123	0.021382	0.224017	0.005627	0.002366	0.006606	0.008395	0.014955	1.00E-05	0.023276	0.015875	1.00E-05	0.005548	0.018977	0.001643	0.018925	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.016729	0.008489	0.007048	0.002398	0.006497	0.007386	0.006965	0.005451	0.003533	0.006573	0.007444	0.00787	1.00E-05	0.028579	0.001295	0.003219	0.004764	0.010557	0.003876	0.012664	0.01052	0.009365	0.022796	0.003533	0.018392	0.013306	0.012075	0.00194	0.00485	1.00E-05	0.014632	0.008463	0.008724	0.002491	0.014166	0.006395
+AMR	Admixture % AMR	0.00403	0.003417	0.001663	1.00E-05	1.00E-05	1.00E-05	0.004519	0.008353	1.00E-05	0.078184	1.00E-05	1.00E-05	0.007756	1.00E-05	0.014408	5.50E-05	0.009534	0.010379	0.005904	1.70E-05	0.003125	1.10E-05	0.002108	0.000578	0.001476	0.000907	0.002852	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.033928	1.00E-05	8.40E-05	1.00E-05	0.010238	1.00E-05	0.002258	1.00E-05	0.030662	0.001158	1.00E-05	1.00E-05	0.001747	1.00E-05	0.005162	0.00079	0.001525	0.002913	0.007959	0.003118	1.00E-05	1.00E-05	0.001804	1.00E-05	0.000493	0.001339	1.00E-05	0.005698	1.00E-05	1.00E-05	0.003902	1.00E-05	0.000158	1.00E-05	0.001146	1.00E-05	1.00E-05	1.00E-05	0.005172	0.000876	1.00E-05	0.00975	0.000599	1.00E-05	0.001857	1.00E-05	0.011105	0.180468	1.00E-05	0.008445	1.00E-05	0.001264	1.00E-05	0.002433	1.00E-05	0.00018	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.001305	0.00939	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.003256	0.006247	7.70E-05	1.00E-05	1.00E-05	1.30E-05	1.00E-05	1.00E-05	1.00E-05	0.005915	0.003178	0.005529	1.00E-05	0.005398	0.001655	1.00E-05	1.00E-05	0.003333	0.003157	0.001969	0.002806	0.001461	0.010983	1.00E-05	0.000671	1.00E-05	1.00E-05	1.00E-05	0.000479	0.00309	1.00E-05	0.004553	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.002708	0.005506	1.00E-05	0.003273	1.10E-05	1.00E-05	1.00E-05	1.00E-05	0.002494	0.000587	0.004402	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.001708	0.00349	1.00E-05	1.00E-05	0.019065	0.001483	1.00E-05	0.000396	0.001499	1.00E-05	1.00E-05	0.000623	1.00E-05	1.00E-05	0.002236	0.001894	1.00E-05	0.003652	0.002908	4.90E-05	1.00E-05	0.00143	1.00E-05	1.00E-05	0.000953	0.00284	0.000634	0.000867	1.00E-05	0.004308	1.00E-05	0.00149	1.00E-05	0.003638	0.005574	0.000373	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.000236	1.00E-05	0.002322	0.018552	1.00E-05	0.003871	1.00E-05	0.000123	1.10E-05	0.003022	1.00E-05	1.00E-05	1.60E-05	1.00E-05	1.00E-05	1.00E-05	0.004826	1.00E-05	1.00E-05	0.011796	1.00E-05	1.00E-05	1.00E-05	0.008294	0.001113	0.254715	1.00E-05	0.001568	0.004954	1.00E-05	0.01348	0.008532	0.002667	0.611844	1.00E-05	0.004208	0.001228	1.00E-05	0.006425	0.156228	0.001633	1.00E-05	0.011286	0.653012	0.000356	0.014583	1.00E-05	5.50E-05	0.004644	1.00E-05	1.00E-05	0.00564	1.00E-05	0.351979	1.00E-05	1.00E-05	1.00E-05	0.001441	0.025788	1.00E-05	0.004187	0.00418	1.00E-05	0.283252	1.00E-05	0.04975	1.00E-05	0.496667	1.00E-05	1.00E-05	1.00E-05	0.26843	1.30E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.003933	0.006956	1.00E-05	1.00E-05	0.006592	1.00E-05	0.001774	0.001194	0.000418	0.00214	1.00E-05	0.001399	0.00538	1.90E-05	1.00E-05	0.002454	0.043648	1.00E-05	1.00E-05	0.085256	1.00E-05	1.00E-05	0.00601	1.00E-05	1.40E-05	1.00E-05	1.00E-05	0.036569	0.00223	0.009121	0.005414	1.00E-05	1.00E-05	1.00E-05	0.001622	0.003676	0.001938	1.00E-05	1.00E-05	0.004179	1.00E-05	1.00E-05	0.003565	1.00E-05	1.00E-05	0.000737	1.00E-05	0.005096	0.164983	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.298519	1.00E-05	0.030143	1.00E-05	1.90E-05	0.011448	0.364123	1.00E-05	0.000789	0.002042	0.002311	0.003748	0.002123	0.002977	1.00E-05	1.00E-05	0.001612	0.002441	1.00E-05	0.002897	0.006034	0.001665	0.001847	0.003754	0.003445	0.002273	0.002561	0.00219	0.004221	0.002371	0.006094	0.001963	0.011987	0.003434	0.001539	0.003722	0.00053	0.003901	0.005365	0.003852	1.00E-05	0.001868	0.000189	0.000637	0.001919	1.00E-05	0.000296	1.00E-05	0.003197	0.001897	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.000287	1.00E-05	0.005535	0.011425	0.027738	0.012193	0.001961	1.00E-05	1.00E-05	0.001798	0.005453	0.003777	0.005978	0.003292	1.00E-05	0.006257	0.000347	1.00E-05	0.001503	1.00E-05	0.003803	0.001053	1.00E-05	0.004578	1.00E-05	1.00E-05	0.002893	0.012434	1.00E-05	1.50E-05	0.002257	0.001233	1.00E-05	0.027002	0.002854	0.00882	0.003935	0.041426	0.046921	0.001005	0.006387	1.00E-05	0.025601	0.452364	0.178358	1.00E-05	0.011117	0.001384	0.0004	0.015838	1.00E-05	0.004288	0.003772	0.005572	0.001005	0.002126	0.001082	1.00E-05	0.000671	0.107549	0.003571	0.001682	0.003063	0.00136	0.004265	0.003685	1.70E-05	0.001692	0.000219	1.00E-05	0.003666	0.003361	0.000856	0.001201	1.00E-05	1.00E-05	0.004346	1.00E-05	0.004708	0.001387	0.012816	1.00E-05	0.009681	0.002965	0.0014	0.006496	1.00E-05	0.001629	1.00E-05	0.001416	0.002947	1.00E-05	1.00E-05	0.004191	0.002091	1.00E-05	0.002168	0.087515	0.004579	0.058066	0.052855	0.068778	1.00E-05	0.074598	0.168087	0.082239	0.2221	0.083684	1.00E-05	0.03552	0.068488	1.00E-05	1.00E-05	0.005319	0.132465
+SAS	Admixture % SAS	1.00E-05	1.00E-05	0.002544	1.00E-05	0.001893	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.000265	0.004512	0.068358	0.003802	0.00315	1.00E-05	1.00E-05	0.082175	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.002662	1.00E-05	1.10E-05	1.00E-05	1.00E-05	1.00E-05	0.837288	1.00E-05	1.00E-05	0.007004	0.005476	0.018925	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.011615	0.001275	1.00E-05	1.00E-05	0.72952	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.004174	0.008125	0.011663	1.00E-05	0.0093	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.007077	0.009208	1.00E-05	0.00353	0.005302	0.007583	0.005149	0.004815	1.00E-05	0.003291	0.002487	0.004074	1.00E-05	1.00E-05	0.007683	0.009987	0.00284	0.022805	1.00E-05	0.002195	0.027898	1.00E-05	1.00E-05	0.002102	0.00135	0.008451	1.00E-05	1.00E-05	0.002034	1.00E-05	0.005016	0.032649	0.0009	1.00E-05	0.007806	0.031836	0.01329	1.00E-05	0.001981	1.00E-05	1.00E-05	0.009503	0.00078	0.000279	1.00E-05	0.01174	1.00E-05	0.001538	1.00E-05	0.001419	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.00269	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.002263	1.00E-05	0.019389	0.014551	0.017634	0.013861	0.047318	1.00E-05	0.010042	0.854528	1.00E-05	0.002558	1.00E-05	0.008019	0.063187	1.00E-05	0.004785	0.000675	1.00E-05	1.00E-05	0.052277	1.00E-05	1.00E-05	1.00E-05	0.017394	1.00E-05	0.063764	1.00E-05	0.882345	0.021333	0.056153	1.30E-05	1.00E-05	1.00E-05	0.816453	1.00E-05	1.00E-05	1.00E-05	0.003488	1.00E-05	0.000712	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.006641	1.00E-05	1.00E-05	0.001983	1.00E-05	1.00E-05	0.009986	1.00E-05	1.00E-05	0.002318	0.759469	0.009536	0.084545	1.00E-05	0.004783	0.006001	1.90E-05	1.40E-05	1.00E-05	1.00E-05	1.00E-05	2.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.00742	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.033224	1.00E-05	1.00E-05	1.00E-05	0.002218	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.002376	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.0069	1.00E-05	1.00E-05	0.018243	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.006597	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.009452	1.00E-05	1.00E-05	0.006194	0.004607	0.010991	1.00E-05	1.00E-05	0.001081	1.00E-05	0.00274	0.001243	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.004187	0.003854	0.00086	1.00E-05	0.016897	0.002154	1.00E-05	0.002461	0.001409	1.10E-05	0.035878	1.00E-05	0.010661	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.005462	0.009957	1.00E-05	1.00E-05	1.00E-05	0.007378	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.033922	1.00E-05	1.00E-05	0.001741	1.00E-05	1.00E-05	0.003856	0.010817	0.010927	0.004099	1.00E-05	0.000135	1.00E-05	1.00E-05	0.004503	0.014135	1.00E-05	1.00E-05	1.00E-05	0.010261	1.00E-05	0.055596	1.00E-05	1.00E-05	0.014338	1.00E-05	1.00E-05	1.00E-05	0.001428	1.00E-05	0.000533	1.00E-05	1.00E-05	1.30E-05	1.00E-05	0.002186	0.155323	0.005136	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.004605	1.00E-05	0.001586	1.00E-05	0.002237	1.00E-05	1.00E-05	1.00E-05	0.005939	1.00E-05	1.00E-05	0.009265	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.004503	0.009916	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.013261	1.00E-05	0.002141	1.00E-05	1.00E-05	1.00E-05	0.001212	1.00E-05	1.00E-05	0.004182	0.001571	0.0089	1.00E-05	0.001208	1.00E-05	1.00E-05	1.00E-05	0.039282	0.026397	0.00917	1.00E-05	1.00E-05	0.016962	1.00E-05	1.00E-05	0.004458	1.00E-05	0.004882	0.005282	0.001098	0.0026	1.00E-05	0.000575	1.00E-05	0.002793	1.00E-05	1.00E-05	1.00E-05	0.004255	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.002988	1.00E-05	0.010563	1.00E-05	1.00E-05	0.001426	0.002206	1.00E-05	0.003981	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.002236	1.00E-05	1.00E-05	1.00E-05	0.003598	1.00E-05	0.002598	0.008568	1.00E-05	1.00E-05	0.018396	0.052097	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.005272	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.012628	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.003636	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.018904	1.00E-05	1.00E-05	0.116004	1.00E-05	1.00E-05	0.001654	1.00E-05	1.50E-05	0.000988	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.026516	1.00E-05	1.00E-05	1.00E-05	0.029475	0.000172	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	1.00E-05	0.013921	1.00E-05	0.001705	1.00E-05	1.00E-05	1.00E-05	1.00E-05

data_log2_cna.txt

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data_methylation_hm27_hm450_merged.txt

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data_mrna_seq_v2_rsem.txt

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data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt

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data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt

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data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt

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data_mutations.txt

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data_sv.txt

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+Sample_Id	Site1_Hugo_Symbol	Site1_Chromosome	Site1_Position	Site2_Hugo_Symbol	Site2_Chromosome	Site2_Position	Site2_Effect_On_Frame	Tumor_Split_Read_Count	Tumor_Paired_End_Read_Count	SV_Status	NCBI_Build	Event_Info
+TCGA-4P-AA8J-01	SUFU	10	102550106	ADK	10	74708321	in-frame	19	38	SOMATIC	GRCh37	SUFU-ADK
+TCGA-4P-AA8J-01	SMPD4P1	22	20626096	MED15	22	20582611		9	54	SOMATIC	GRCh37	SMPD4P1-MED15
+TCGA-4P-AA8J-01	MMS19	10	97498273	MICU1	10	72566794		2	8	SOMATIC	GRCh37	MMS19-MICU1
+TCGA-BA-4076-01	PHACTR2	6	143678209	PLAGL1	6	143968978		3	30	SOMATIC	GRCh37	PHACTR2-PLAGL1
+TCGA-BA-4078-01	SLC2A12	6	134052378	SGK1	6	134262148	frameshift	20	61	SOMATIC	GRCh37	SLC2A12-SGK1
+TCGA-BA-4078-01	PTK7	6	43076567	ANKS1A	6	34967239	frameshift	5	38	SOMATIC	GRCh37	PTK7-ANKS1A
+TCGA-BA-4078-01	ATF6B	6	32116480	CMAHP	6	25115100		3	33	SOMATIC	GRCh37	ATF6B-CMAHP
+TCGA-BA-4078-01	ANKS1A	6	34889599	DCDC2	6	24353623	in-frame	5	2	SOMATIC	GRCh37	ANKS1A-DCDC2
+TCGA-BA-4078-01	POFUT1	20	32208065	FDFT1	8	11831518	frameshift	1	1	SOMATIC	GRCh37	POFUT1-FDFT1
+TCGA-BA-4078-01	PRKDC	8	47927194	SPIDR	8	47595811	frameshift	1	1	SOMATIC	GRCh37	PRKDC-SPIDR
+TCGA-BA-5151-01	STIM2	4	26861369	TBC1D19	4	26720081	in-frame	1	3	SOMATIC	GRCh37	STIM2-TBC1D19
+TCGA-BA-5152-01	RBMS2	12	56586926	NACA	12	56713190	in-frame	2	1	SOMATIC	GRCh37	RBMS2-NACA
+TCGA-BA-5153-01	TRIO	5	14280436	PPP2R5E	14	63382157	in-frame	12	78	SOMATIC	GRCh37	TRIO-PPP2R5E
+TCGA-BA-5153-01	ARIH2	3	48918998	TRIO	5	14286871		1	9	SOMATIC	GRCh37	ARIH2-TRIO
+TCGA-BA-5557-01	TFRC	3	196082043	JUP	17	41771862		1	1	SOMATIC	GRCh37	TFRC-JUP
+TCGA-BA-5558-01	GRAMD2	15	72197731	PKM	15	72202620	frameshift	10	29	SOMATIC	GRCh37	GRAMD2-PKM
+TCGA-BA-5559-01	SAMD12	8	118580715	SAMHD1	20	36916830	in-frame	21	76	SOMATIC	GRCh37	SAMD12-SAMHD1
+TCGA-BA-5559-01	SAMHD1	20	36919364	YIF1B	19	38305507	in-frame	12	57	SOMATIC	GRCh37	SAMHD1-YIF1B
+TCGA-BA-5559-01	YIF1B	19	38309405	SAMD12	8	118439961	in-frame	2	6	SOMATIC	GRCh37	YIF1B-SAMD12
+TCGA-BA-6868-01	LAMB1	7	107986022	PUS7	7	105457926	in-frame	86	384	SOMATIC	GRCh37	LAMB1-PUS7
+TCGA-BA-6868-01	MAMDC2	9	70131612	MRPS28	8	79919148	frameshift	58	165	SOMATIC	GRCh37	MAMDC2-MRPS28
+TCGA-BA-6868-01	ELAVL1	19	7991644	LYPLA2P2	19	7879940		12	28	SOMATIC	GRCh37	ELAVL1-LYPLA2P2
+TCGA-BA-6868-01	SGMS1	10	50466890	GRID1	10	85916239		3	23	SOMATIC	GRCh37	SGMS1-GRID1
+TCGA-BA-6868-01	MRPS28	8	80002999	MAMDC2	9	70108211	in-frame	3	4	SOMATIC	GRCh37	MRPS28-MAMDC2
+TCGA-BA-6868-01	ELAVL1	19	7973807	PRR36	19	7873617	in-frame	1000	1000	SOMATIC	GRCh37	ELAVL1-PRR36
+TCGA-BA-6869-01	PEMT	17	17576920	RAI1	17	17724028		4	31	SOMATIC	GRCh37	PEMT-RAI1
+TCGA-BA-6869-01	RAI1	17	17724159	PEMT	17	17577027		5	26	SOMATIC	GRCh37	RAI1-PEMT
+TCGA-BA-6869-01	PDLIM1	10	95263864	TNRC6A	16	24789232	frameshift	1	7	SOMATIC	GRCh37	PDLIM1-TNRC6A
+TCGA-BA-6869-01	PGD	1	10399704	CLSTN1	1	9730705	in-frame	1	1	SOMATIC	GRCh37	PGD-CLSTN1
+TCGA-BA-6871-01	NUAK2	1	205311705	LEMD1	1	205420574		39	157	SOMATIC	GRCh37	NUAK2-LEMD1
+TCGA-BA-6871-01	BAIAP2	17	81086580	TBCD	17	82889668	in-frame	38	148	SOMATIC	GRCh37	BAIAP2-TBCD
+TCGA-BA-6871-01	SCNN1A	12	6348727	DCP1B	12	1946286	in-frame	8	78	SOMATIC	GRCh37	SCNN1A-DCP1B
+TCGA-BA-6871-01	NR4A1	12	52041929	IL20RB	3	136980466	in-frame	9	17	SOMATIC	GRCh37	NR4A1-IL20RB
+TCGA-BA-6871-01	ZNF76	6	35259727	ANKS1A	6	35017473		1	9	SOMATIC	GRCh37	ZNF76-ANKS1A
+TCGA-BA-6872-01	SELENOW	19	47778814	EHD2	19	47740881	frameshift	21	92	SOMATIC	GRCh37	SELENOW-EHD2
+TCGA-BA-6872-01	LYPD1	2	132668400	NCKAP5	2	132732051	in-frame	3	11	SOMATIC	GRCh37	LYPD1-NCKAP5
+TCGA-BA-6872-01	EGFR	7	55019365	DYM	18	49391645	frameshift	1	14	SOMATIC	GRCh37	EGFR-DYM
+TCGA-BA-6872-01	HIPK3	11	33257889	WT1-AS	11	32452021		1	5	SOMATIC	GRCh37	HIPK3-WT1-AS
+TCGA-BA-6873-01	ALDH1A3	15	100887712	IGF1R	15	98891325	frameshift	1	3	SOMATIC	GRCh37	ALDH1A3-IGF1R
+TCGA-BA-6873-01	LTBP3	11	65553701	CERS3	15	100402865	in-frame	1	3	SOMATIC	GRCh37	LTBP3-CERS3
+TCGA-BA-7269-01	FOXN2	2	48314814	PLB1	2	28640927		30	79	SOMATIC	GRCh37	FOXN2-PLB1
+TCGA-BA-7269-01	MARK2	11	63839560	BPIFA2	20	33178147	frameshift	12	36	SOMATIC	GRCh37	MARK2-BPIFA2
+TCGA-BA-7269-01	TAOK1	17	29467216	PARD6G	18	80183150	frameshift	6	12	SOMATIC	GRCh37	TAOK1-PARD6G
+TCGA-BA-A4IG-01	MAP2K2	19	4110509	PSMD9	12	121915856	in-frame	40	296	SOMATIC	GRCh37	MAP2K2-PSMD9
+TCGA-BA-A4IG-01	TNS4	17	40487036	CCR7	17	40555818	frameshift	1	7	SOMATIC	GRCh37	TNS4-CCR7
+TCGA-BA-A4IG-01	CMTM4	16	66696340	SULT1E1	4	69857653		2	2	SOMATIC	GRCh37	CMTM4-SULT1E1
+TCGA-BA-A4II-01	GSE1	16	85613398	EMC8	16	85789050	frameshift	23	113	SOMATIC	GRCh37	GSE1-EMC8
+TCGA-BA-A4II-01	MARK2	11	63900678	C11orf84	11	63826928	frameshift	6	90	SOMATIC	GRCh37	MARK2-C11orf84
+TCGA-BA-A4II-01	AKAP9	7	91941147	ANKIB1	7	92294889		3	10	SOMATIC	GRCh37	AKAP9-ANKIB1
+TCGA-BA-A4II-01	WRAP53	17	7686078	MPDU1	17	7591851		3	6	SOMATIC	GRCh37	WRAP53-MPDU1
+TCGA-BA-A4II-01	KLHDC4	16	87765792	CA5A	16	87902520	in-frame	2	9	SOMATIC	GRCh37	KLHDC4-CA5A
+TCGA-BA-A4II-01	TOP2A	17	40416740	TLK2	17	62560016	in-frame	1	2	SOMATIC	GRCh37	TOP2A-TLK2
+TCGA-BA-A6D8-01	DEDD	1	161130815	UFC1	1	161153926		13	39	SOMATIC	GRCh37	DEDD-UFC1
+TCGA-BA-A6D8-01	PCNX1	14	71103669	TTLL5	14	75954424	frameshift	6	17	SOMATIC	GRCh37	PCNX1-TTLL5
+TCGA-BA-A6DB-01	DLG1	3	197282679	TMEM44	3	194623695	in-frame	1	3	SOMATIC	GRCh37	DLG1-TMEM44
+TCGA-BA-A6DE-01	C18orf8	18	23509279	PSPC1	13	19772543	in-frame	16	121	SOMATIC	GRCh37	C18orf8-PSPC1
+TCGA-BA-A6DE-01	MAP2	2	209424276	ICA1L	2	202816009		9	45	SOMATIC	GRCh37	MAP2-ICA1L
+TCGA-BA-A6DJ-01	UBE4B	1	10033694	PEX14	1	10536213	in-frame	12	43	SOMATIC	GRCh37	UBE4B-PEX14
+TCGA-BA-A6DJ-01	VMP1	17	59817773	TUBD1	17	59878334	frameshift	5	21	SOMATIC	GRCh37	VMP1-TUBD1
+TCGA-BA-A6DL-01	PARL	3	183884722	ABCC5	3	184014447		6	13	SOMATIC	GRCh37	PARL-ABCC5
+TCGA-BA-A6DL-01	CLTA	9	36204179	GNE	9	36249397	frameshift	1	6	SOMATIC	GRCh37	CLTA-GNE
+TCGA-BA-A8YP-01	PRPSAP2	17	18867334	PLLP	16	57258584	frameshift	16	33	SOMATIC	GRCh37	PRPSAP2-PLLP
+TCGA-BA-A8YP-01	NRIP1	21	15064745	GDPD1	17	59245414		11	29	SOMATIC	GRCh37	NRIP1-GDPD1
+TCGA-BA-A8YP-01	ZFR	5	32379115	PLEKHG4B	5	181514	frameshift	6	17	SOMATIC	GRCh37	ZFR-PLEKHG4B
+TCGA-BA-A8YP-01	KBTBD2	7	32891536	PDE1C	7	32169956		5	8	SOMATIC	GRCh37	KBTBD2-PDE1C
+TCGA-BA-A8YP-01	KDM6A	X	44974715	DLL1	6	170286298	frameshift	4	10	SOMATIC	GRCh37	KDM6A-DLL1
+TCGA-BA-A8YP-01	DANCR	4	52712959	GTF3C3	2	196770039		5	5	SOMATIC	GRCh37	DANCR-GTF3C3
+TCGA-BA-A8YP-01	RSF1	11	77820528	TENM4	11	78738570	frameshift	3	5	SOMATIC	GRCh37	RSF1-TENM4
+TCGA-BB-4217-01	TUBD1	17	59886083	INPP5D	2	233182410	frameshift	5	14	SOMATIC	GRCh37	TUBD1-INPP5D
+TCGA-BB-4223-01	PAN3	13	28139087	NTRK2	9	84934162	in-frame	7	5	SOMATIC	GRCh37	PAN3-NTRK2
+TCGA-BB-4223-01	FAM69A	1	92961376	LRRC8D	1	89843638		4	11	SOMATIC	GRCh37	FAM69A-LRRC8D
+TCGA-BB-4223-01	OBSCN	1	228224734	CASZ1	1	10665571	in-frame	3	15	SOMATIC	GRCh37	OBSCN-CASZ1
+TCGA-BB-4223-01	ATP11B	3	182869331	NAALADL2	3	175655481		3	10	SOMATIC	GRCh37	ATP11B-NAALADL2
+TCGA-BB-4224-01	PACS2	14	105353733	DIO3OS	14	101552757		16	59	SOMATIC	GRCh37	PACS2-DIO3OS
+TCGA-BB-4224-01	NOTCH1	9	136544024	SDCCAG3	9	136407938	frameshift	10	37	SOMATIC	GRCh37	NOTCH1-SDCCAG3
+TCGA-BB-4224-01	ATF7	12	53626280	ATP5G2	12	53676660		9	33	SOMATIC	GRCh37	ATF7-ATP5G2
+TCGA-BB-4225-01	KCNQ1	11	2445484	METTL15	11	28526475		10	52	SOMATIC	GRCh37	KCNQ1-METTL15
+TCGA-BB-4227-01	MSI2	17	57401471	UTP18	17	51296965	in-frame	11	65	SOMATIC	GRCh37	MSI2-UTP18
+TCGA-BB-4227-01	GLS	2	190924593	MYO1B	2	191276887		12	60	SOMATIC	GRCh37	GLS-MYO1B
+TCGA-BB-4227-01	RAP2B	3	153163057	ANAPC16	10	72230366	in-frame	7	27	SOMATIC	GRCh37	RAP2B-ANAPC16
+TCGA-BB-4227-01	RAP2B	3	153163577	ASCC1	10	72216072		6	16	SOMATIC	GRCh37	RAP2B-ASCC1
+TCGA-BB-4227-01	TTLL11	9	122039272	NDUFA8	9	122148277	frameshift	2	16	SOMATIC	GRCh37	TTLL11-NDUFA8
+TCGA-BB-7861-01	PUM1	1	30992390	KIAA1211	4	56323377	frameshift	7	14	SOMATIC	GRCh37	PUM1-KIAA1211
+TCGA-BB-7861-01	TMLHE	X	155513986	NEDD9	6	11193692	frameshift	2	8	SOMATIC	GRCh37	TMLHE-NEDD9
+TCGA-BB-7861-01	HERC4	10	67990211	CTNNA3	10	65920617	frameshift	1	9	SOMATIC	GRCh37	HERC4-CTNNA3
+TCGA-BB-7866-01	EIF2S2	20	34098498	NCOA6	20	34743341	in-frame	11	29	SOMATIC	GRCh37	EIF2S2-NCOA6
+TCGA-BB-7866-01	TAF4	20	61997550	STX16	20	58667490	in-frame	2	42	SOMATIC	GRCh37	TAF4-STX16
+TCGA-BB-7866-01	XRN1	3	142347234	GK5	3	142215692	frameshift	1	4	SOMATIC	GRCh37	XRN1-GK5
+TCGA-BB-7871-01	POLH	6	43615525	EZR	6	158766444		5	16	SOMATIC	GRCh37	POLH-EZR
+TCGA-BB-7871-01	ADK	10	74224591	TAF1D	11	93732291		2	4	SOMATIC	GRCh37	ADK-TAF1D
+TCGA-BB-7872-01	RBBP8	18	22936960	TAF4B	18	26265170	in-frame	7	32	SOMATIC	GRCh37	RBBP8-TAF4B
+TCGA-BB-7872-01	TP53TG1	7	87341523	ABCB1	7	87553932		6	21	SOMATIC	GRCh37	TP53TG1-ABCB1
+TCGA-BB-8596-01	SF1	11	64766900	HRASLS2	11	63558660	in-frame	25	164	SOMATIC	GRCh37	SF1-HRASLS2
+TCGA-BB-A5HY-01	DTX2	7	76463709	ZP3	7	76425052		29	342	SOMATIC	GRCh37	DTX2-ZP3
+TCGA-BB-A5HY-01	SIN3A	15	75451423	SNUPN	15	75621056		15	36	SOMATIC	GRCh37	SIN3A-SNUPN
+TCGA-BB-A5HY-01	BDP1	5	71483896	PMCHL2	5	71377506		9	47	SOMATIC	GRCh37	BDP1-PMCHL2
+TCGA-BB-A5HY-01	SLC25A17	22	40799023	DMC1	22	38569390		1	7	SOMATIC	GRCh37	SLC25A17-DMC1
+TCGA-BB-A5HY-01	NIN	14	50770388	SAV1	14	50665619	in-frame	1	3	SOMATIC	GRCh37	NIN-SAV1
+TCGA-C9-A47Z-01	AK3	9	4740937	IL33	9	6241684		8	197	SOMATIC	GRCh37	AK3-IL33
+TCGA-C9-A47Z-01	NDRG3	20	36746045	CPLX1	4	792608		5	9	SOMATIC	GRCh37	NDRG3-CPLX1
+TCGA-CN-4723-01	DNM1	9	128203631	LCN2	9	128151638	in-frame	35	120	SOMATIC	GRCh37	DNM1-LCN2
+TCGA-CN-4723-01	KIAA0319L	1	35554350	DLGAP3	1	34869089	frameshift	6	79	SOMATIC	GRCh37	KIAA0319L-DLGAP3
+TCGA-CN-4723-01	CACNA2D1	7	82335135	NAALADL2	3	175737306	in-frame	11	15	SOMATIC	GRCh37	CACNA2D1-NAALADL2
+TCGA-CN-4725-01	SLAIN2	4	48383784	CWH43	4	49003735	in-frame	20	173	SOMATIC	GRCh37	SLAIN2-CWH43
+TCGA-CN-4725-01	ZNF236	18	76881512	ZNF627	19	11614527	frameshift	2	4	SOMATIC	GRCh37	ZNF236-ZNF627
+TCGA-CN-4726-01	DSG1	18	31331867	DSP	6	7567781	in-frame	1	7	SOMATIC	GRCh37	DSG1-DSP
+TCGA-CN-4726-01	CHMP5	9	33276564	SPINK4	9	33245112	in-frame	1	2	SOMATIC	GRCh37	CHMP5-SPINK4
+TCGA-CN-4726-01	PPP1R9B	17	50149143	COL1A1	17	50192850	in-frame	1	2	SOMATIC	GRCh37	PPP1R9B-COL1A1
+TCGA-CN-4728-01	NLGN4Y	Y	14622591	VAMP7	Y	57126221	in-frame	2	3	SOMATIC	GRCh37	NLGN4Y-VAMP7
+TCGA-CN-4728-01	TSC22D1	13	44573163	LETM1	4	1825683	frameshift	1	5	SOMATIC	GRCh37	TSC22D1-LETM1
+TCGA-CN-4730-01	STARD3	17	39658522	OAZ1	19	2271782	in-frame	1	2	SOMATIC	GRCh37	STARD3-OAZ1
+TCGA-CN-4731-01	SCAF1	19	49653705	FLT3LG	19	49478909	frameshift	14	56	SOMATIC	GRCh37	SCAF1-FLT3LG
+TCGA-CN-4731-01	PPP3CC	8	22475624	PIWIL2	8	22281120	in-frame	5	31	SOMATIC	GRCh37	PPP3CC-PIWIL2
+TCGA-CN-4731-01	WDR82	3	52287833	NT5DC2	3	52529334		5	29	SOMATIC	GRCh37	WDR82-NT5DC2
+TCGA-CN-4731-01	SLC3A2	11	62856381	GNG3	11	62707700		4	6	SOMATIC	GRCh37	SLC3A2-GNG3
+TCGA-CN-4733-01	RCL1	9	4793227	PLGRKT	9	5361888	frameshift	11	18	SOMATIC	GRCh37	RCL1-PLGRKT
+TCGA-CN-4733-01	EPB41L1	20	36092813	TGM3	20	2309657		7	20	SOMATIC	GRCh37	EPB41L1-TGM3
+TCGA-CN-4735-01	CDC42BPB	14	103003928	PPP4R3A	14	91461607	frameshift	8	36	SOMATIC	GRCh37	CDC42BPB-PPP4R3A
+TCGA-CN-4735-01	TTC7B	14	90730075	PPP2R5C	14	101856686	frameshift	1	17	SOMATIC	GRCh37	TTC7B-PPP2R5C
+TCGA-CN-4735-01	PSD3	8	18867674	ANO1	11	70087752	frameshift	2	6	SOMATIC	GRCh37	PSD3-ANO1
+TCGA-CN-4736-01	MAP3K5	6	136791710	ARFIP1	4	152872452	in-frame	3	17	SOMATIC	GRCh37	MAP3K5-ARFIP1
+TCGA-CN-4736-01	PRRG4	11	32830632	QSER1	11	32953857	in-frame	1	3	SOMATIC	GRCh37	PRRG4-QSER1
+TCGA-CN-4737-01	TBC1D12	10	94442019	HELLS	10	94588229	in-frame	4	15	SOMATIC	GRCh37	TBC1D12-HELLS
+TCGA-CN-4738-01	TLE3	15	70094532	THAP10	15	70882908	in-frame	20	55	SOMATIC	GRCh37	TLE3-THAP10
+TCGA-CN-4739-01	TBC1D2	9	98228952	GABBR2	9	98496514	in-frame	2	18	SOMATIC	GRCh37	TBC1D2-GABBR2
+TCGA-CN-4739-01	USP25	21	15811210	PCNT	21	46421970	in-frame	1	3	SOMATIC	GRCh37	USP25-PCNT
+TCGA-CN-4741-01	PIP5K1C	19	3700297	MATK	19	3781672	in-frame	7	27	SOMATIC	GRCh37	PIP5K1C-MATK
+TCGA-CN-4742-01	NCKAP1	2	183023806	PARD3	10	34696419	in-frame	29	116	SOMATIC	GRCh37	NCKAP1-PARD3
+TCGA-CN-4742-01	ELMSAN1	14	73727458	ANO1	11	70111707	frameshift	2	11	SOMATIC	GRCh37	ELMSAN1-ANO1
+TCGA-CN-4742-01	KLF7	2	207165467	ALS2	2	201768945		1	3	SOMATIC	GRCh37	KLF7-ALS2
+TCGA-CN-5355-01	HMGXB3	5	150001179	CAPN1	11	65204683	in-frame	8	60	SOMATIC	GRCh37	HMGXB3-CAPN1
+TCGA-CN-5355-01	SMG1P3	16	21519828	ME1	6	83352139		2	16	SOMATIC	GRCh37	SMG1P3-ME1
+TCGA-CN-5355-01	BOP1	8	144276224	PLEC	8	143938692	frameshift	1	2	SOMATIC	GRCh37	BOP1-PLEC
+TCGA-CN-5359-01	NEDD4L	18	58165861	CDH19	18	66572316		2	28	SOMATIC	GRCh37	NEDD4L-CDH19
+TCGA-CN-5359-01	TSFM	12	57793073	OS9	12	57695962	in-frame	5	4	SOMATIC	GRCh37	TSFM-OS9
+TCGA-CN-5359-01	LAMB1	7	107986022	ATXN7L1	7	105761463	in-frame	2	12	SOMATIC	GRCh37	LAMB1-ATXN7L1
+TCGA-CN-5361-01	SRPK1	6	35920468	SOX2-OT	3	181563720		1	19	SOMATIC	GRCh37	SRPK1-SOX2-OT
+TCGA-CN-5361-01	RNPEP	1	202004496	MICALL1	22	37932798	frameshift	1	1	SOMATIC	GRCh37	RNPEP-MICALL1
+TCGA-CN-5363-01	NSF	17	46704854	STRADA	17	63690597		3	14	SOMATIC	GRCh37	NSF-STRADA
+TCGA-CN-5363-01	CD44	11	35139370	TRIM44	11	35725924	in-frame	1	14	SOMATIC	GRCh37	CD44-TRIM44
+TCGA-CN-5364-01	PTPN1	20	50510590	P2RX4	12	121217134	frameshift	11	49	SOMATIC	GRCh37	PTPN1-P2RX4
+TCGA-CN-5364-01	INTS12	4	105691976	CXXC4	4	104472366	in-frame	1	13	SOMATIC	GRCh37	INTS12-CXXC4
+TCGA-CN-5366-01	ESPN	1	6460110	FBLIM1	1	15784548	in-frame	1	41	SOMATIC	GRCh37	ESPN-FBLIM1
+TCGA-CN-5367-01	CPT1A	11	68799218	KMT5B	11	68167178	frameshift	31	88	SOMATIC	GRCh37	CPT1A-KMT5B
+TCGA-CN-5367-01	FCHSD2	11	73140031	GUCY1A2	11	106986131	frameshift	11	85	SOMATIC	GRCh37	FCHSD2-GUCY1A2
+TCGA-CN-5367-01	MAX	14	65093708	RUNX2	6	45437947	frameshift	7	40	SOMATIC	GRCh37	MAX-RUNX2
+TCGA-CN-5367-01	CEP126	11	101922760	YAP1	11	102162456	in-frame	8	12	SOMATIC	GRCh37	CEP126-YAP1
+TCGA-CN-5367-01	RUNX2	6	45432019	MAX	14	65078036	frameshift	3	6	SOMATIC	GRCh37	RUNX2-MAX
+TCGA-CN-5367-01	ARHGAP42	11	100795166	FAM168A	11	73468492		1	4	SOMATIC	GRCh37	ARHGAP42-FAM168A
+TCGA-CN-5369-01	TNFSF14	19	6667113	GRAMD1A	19	35019191	in-frame	1	7	SOMATIC	GRCh37	TNFSF14-GRAMD1A
+TCGA-CN-5370-01	THBS1	15	39584422	NRG1	8	32727949	frameshift	20	71	SOMATIC	GRCh37	THBS1-NRG1
+TCGA-CN-5370-01	FOXP1	3	71493426	PXDNL	8	51499770		2	10	SOMATIC	GRCh37	FOXP1-PXDNL
+TCGA-CN-5370-01	FOXN1	17	28506443	PRKDC	8	47785317		3	5	SOMATIC	GRCh37	FOXN1-PRKDC
+TCGA-CN-6010-01	MAPK10	4	86453030	CCSER1	4	90308244		2	19	SOMATIC	GRCh37	MAPK10-CCSER1
+TCGA-CN-6012-01	TIMELESS	12	56437466	GLS2	12	56471895		10	73	SOMATIC	GRCh37	TIMELESS-GLS2
+TCGA-CN-6013-01	POLR2B	4	56990898	REST	4	56966656	frameshift	23	43	SOMATIC	GRCh37	POLR2B-REST
+TCGA-CN-6013-01	NFYC	1	40691867	CTPS1	1	41001029		3	33	SOMATIC	GRCh37	NFYC-CTPS1
+TCGA-CN-6017-01	TNNT3	11	1934885	COL1A1	17	50197994	in-frame	1000	1000	SOMATIC	GRCh37	TNNT3-COL1A1
+TCGA-CN-6018-01	SMURF1	7	99143726	AZGP1	7	99972006	in-frame	6	31	SOMATIC	GRCh37	SMURF1-AZGP1
+TCGA-CN-6018-01	SMURF1	7	99143726	GJC3	7	99923603	in-frame	1	13	SOMATIC	GRCh37	SMURF1-GJC3
+TCGA-CN-6020-01	MIRLET7BHG	22	46103249	SCUBE1	22	43339235		7	39	SOMATIC	GRCh37	MIRLET7BHG-SCUBE1
+TCGA-CN-6020-01	NSD3	8	38304587	ASH2L	8	38143739		1	10	SOMATIC	GRCh37	NSD3-ASH2L
+TCGA-CN-6022-01	IQCH	15	67261394	MAP2K5	15	67693518	in-frame	1	3	SOMATIC	GRCh37	IQCH-MAP2K5
+TCGA-CN-6023-01	NDUFAF6	8	94975415	DPY19L4	8	94726331		2	5	SOMATIC	GRCh37	NDUFAF6-DPY19L4
+TCGA-CN-6024-01	SPEN	1	15848150	C1orf64	1	16005919	frameshift	30	77	SOMATIC	GRCh37	SPEN-C1orf64
+TCGA-CN-6024-01	CBFA2T2	20	33490301	HM13	20	31544947	frameshift	9	28	SOMATIC	GRCh37	CBFA2T2-HM13
+TCGA-CN-6024-01	GAPDH	12	6537010	TNC	9	115021267	in-frame	1	9	SOMATIC	GRCh37	GAPDH-TNC
+TCGA-CN-6989-01	TMSB10	2	84905718	COL6A2	21	46111450		1	3	SOMATIC	GRCh37	TMSB10-COL6A2
+TCGA-CN-6992-01	IVNS1ABP	1	185299710	BAHCC1	17	81426800	in-frame	12	31	SOMATIC	GRCh37	IVNS1ABP-BAHCC1
+TCGA-CN-6992-01	TPX2	20	31742647	UNC5D	8	35549292		3	7	SOMATIC	GRCh37	TPX2-UNC5D
+TCGA-CN-6992-01	DESI2	1	244653355	C1orf101	1	244635489	in-frame	1	12	SOMATIC	GRCh37	DESI2-C1orf101
+TCGA-CN-6992-01	MED13	17	61962752	INTS2	17	61912070	frameshift	1000	1000	SOMATIC	GRCh37	MED13-INTS2
+TCGA-CN-6994-01	PHF21A	11	45945840	GLIS2	16	4336725	frameshift	4	29	SOMATIC	GRCh37	PHF21A-GLIS2
+TCGA-CN-6994-01	TYMP	22	50529904	ATP8B4	15	49987549		1	10	SOMATIC	GRCh37	TYMP-ATP8B4
+TCGA-CN-6994-01	FKBP3	14	45129794	FANCM	14	45148837	in-frame	1	3	SOMATIC	GRCh37	FKBP3-FANCM
+TCGA-CN-6995-01	ANO1	11	70132079	FOLR3	11	72135947		2	25	SOMATIC	GRCh37	ANO1-FOLR3
+TCGA-CN-6997-01	LYN	8	55953984	NTRK3	15	88033045	in-frame	24	146	SOMATIC	GRCh37	LYN-NTRK3
+TCGA-CN-A498-01	NOTCH1	9	136511152	MAPK1	22	21788808	frameshift	3	12	SOMATIC	GRCh37	NOTCH1-MAPK1
+TCGA-CN-A498-01	MAPK1	22	21799012	NOTCH1	9	136519565	frameshift	1	7	SOMATIC	GRCh37	MAPK1-NOTCH1
+TCGA-CN-A499-01	VCL	10	74043153	SFXN2	10	102726612	in-frame	2	7	SOMATIC	GRCh37	VCL-SFXN2
+TCGA-CN-A49A-01	STK39	2	168012634	NCKAP5	2	132732051	in-frame	8	35	SOMATIC	GRCh37	STK39-NCKAP5
+TCGA-CN-A49A-01	GPHN	14	67023675	ATP6V1D	14	67353040	frameshift	1	7	SOMATIC	GRCh37	GPHN-ATP6V1D
+TCGA-CN-A49C-01	MACROD1	11	64151239	TCN1	11	59854835	in-frame	112	486	SOMATIC	GRCh37	MACROD1-TCN1
+TCGA-CN-A49C-01	CPT1A	11	68781771	P4HA3	11	74289130	frameshift	3	8	SOMATIC	GRCh37	CPT1A-P4HA3
+TCGA-CN-A49C-01	ERBB2	17	39717480	IKZF3	17	39792933	frameshift	1	9	SOMATIC	GRCh37	ERBB2-IKZF3
+TCGA-CN-A63T-01	SIL1	5	139121035	DNAJC18	5	139414272	in-frame	7	13	SOMATIC	GRCh37	SIL1-DNAJC18
+TCGA-CN-A63T-01	CSTF3	11	33090532	CCDC73	11	32760258		2	2	SOMATIC	GRCh37	CSTF3-CCDC73
+TCGA-CN-A63U-01	OCIAD1	4	48831249	GLIPR2	9	36162362		15	131	SOMATIC	GRCh37	OCIAD1-GLIPR2
+TCGA-CN-A63U-01	SLC25A17	22	40792525	RBX1	22	40967799	frameshift	12	60	SOMATIC	GRCh37	SLC25A17-RBX1
+TCGA-CN-A63W-01	COL17A1	10	104062258	CFAP43	10	104167737	frameshift	1	9	SOMATIC	GRCh37	COL17A1-CFAP43
+TCGA-CN-A63W-01	PEAK1	15	77420006	USP31	16	23102463		1	9	SOMATIC	GRCh37	PEAK1-USP31
+TCGA-CN-A63W-01	OXR1	8	106359636	VPS13B	8	99699525	frameshift	1	3	SOMATIC	GRCh37	OXR1-VPS13B
+TCGA-CN-A641-01	SPRR2G	1	153149904	SPRR1B	1	153032460	in-frame	1000	1000	SOMATIC	GRCh37	SPRR2G-SPRR1B
+TCGA-CN-A642-01	MOB3A	19	2076811	STK11	19	1216268	frameshift	13	71	SOMATIC	GRCh37	MOB3A-STK11
+TCGA-CN-A6UY-01	CBFA2T2	20	33490301	REM1	20	31476227		1	6	SOMATIC	GRCh37	CBFA2T2-REM1
+TCGA-CQ-5323-01	CPT1A	11	68773265	SHANK2	11	71174844		6	55	SOMATIC	GRCh37	CPT1A-SHANK2
+TCGA-CQ-5323-01	CPT1A	11	68839552	FGF3	11	69816423		1	17	SOMATIC	GRCh37	CPT1A-FGF3
+TCGA-CQ-5323-01	FCHSD2	11	72889829	NUMA1	11	72006263	in-frame	2	9	SOMATIC	GRCh37	FCHSD2-NUMA1
+TCGA-CQ-5323-01	RNF121	11	71929124	PPFIA1	11	70372212		1	10	SOMATIC	GRCh37	RNF121-PPFIA1
+TCGA-CQ-5326-01	MTERF1	7	91880055	PHTF2	7	77893608	frameshift	2	3	SOMATIC	GRCh37	MTERF1-PHTF2
+TCGA-CQ-5326-01	RWDD4	4	183650984	SORBS2	4	185652728	in-frame	1	5	SOMATIC	GRCh37	RWDD4-SORBS2
+TCGA-CQ-5332-01	PANX1	11	94129493	HEPHL1	11	94111537	in-frame	4	41	SOMATIC	GRCh37	PANX1-HEPHL1
+TCGA-CQ-5332-01	OSBPL1A	18	24225042	RIOK3	18	23473429	in-frame	2	15	SOMATIC	GRCh37	OSBPL1A-RIOK3
+TCGA-CQ-5332-01	PARP1	1	226374226	LIN9	1	226250919	in-frame	4	6	SOMATIC	GRCh37	PARP1-LIN9
+TCGA-CQ-5333-01	EPS8L2	11	709608	AGPAT2	9	136674807	frameshift	95	542	SOMATIC	GRCh37	EPS8L2-AGPAT2
+TCGA-CQ-5334-01	PDE7A	8	65779720	NRG1	8	32727949	in-frame	4	23	SOMATIC	GRCh37	PDE7A-NRG1
+TCGA-CQ-6219-01	AKAP13	15	85380798	RFX7	15	56087509		3	56	SOMATIC	GRCh37	AKAP13-RFX7
+TCGA-CQ-6220-01	CTSA	20	45895133	WFDC3	20	45789945	frameshift	1	6	SOMATIC	GRCh37	CTSA-WFDC3
+TCGA-CQ-6223-01	SNAPC1	14	61768740	FLJ22447	14	61650962		4	46	SOMATIC	GRCh37	SNAPC1-FLJ22447
+TCGA-CQ-6224-01	PTPRD	9	9938507	CYGB	17	76528611		1	30	SOMATIC	GRCh37	PTPRD-CYGB
+TCGA-CQ-6224-01	ALG8	11	78124021	FGF19	11	69699576	frameshift	2	7	SOMATIC	GRCh37	ALG8-FGF19
+TCGA-CQ-6225-01	EIF2AK4	15	39939617	EPB42	15	43203275	frameshift	3	17	SOMATIC	GRCh37	EIF2AK4-EPB42
+TCGA-CQ-6225-01	DUS1L	17	82060701	CCDC57	17	82101866	in-frame	1	6	SOMATIC	GRCh37	DUS1L-CCDC57
+TCGA-CQ-6225-01	MYO1B	2	191350225	ZNF536	19	30443561		1	3	SOMATIC	GRCh37	MYO1B-ZNF536
+TCGA-CQ-6225-01	AP2B1	17	35594067	RAB20	13	110524197	in-frame	1	2	SOMATIC	GRCh37	AP2B1-RAB20
+TCGA-CQ-6227-01	FRMD6	14	51570410	BPIFB1	20	33286033		14	239	SOMATIC	GRCh37	FRMD6-BPIFB1
+TCGA-CQ-6228-01	PANX1	11	94153630	CEP126	11	101944265	frameshift	31	126	SOMATIC	GRCh37	PANX1-CEP126
+TCGA-CQ-6228-01	YIPF1	1	53878315	YTHDF2	1	28768929	frameshift	31	80	SOMATIC	GRCh37	YIPF1-YTHDF2
+TCGA-CQ-6228-01	EGLN1	1	231420998	C1orf131	1	231239188	frameshift	6	28	SOMATIC	GRCh37	EGLN1-C1orf131
+TCGA-CQ-6228-01	GALK2	15	49292537	TERB2	15	44978489	in-frame	4	16	SOMATIC	GRCh37	GALK2-TERB2
+TCGA-CQ-6228-01	LYST	1	235716712	DISC1	1	231795242	frameshift	3	7	SOMATIC	GRCh37	LYST-DISC1
+TCGA-CQ-6228-01	NCOA2	8	70403700	DCUN1D5	11	103083326		2	5	SOMATIC	GRCh37	NCOA2-DCUN1D5
+TCGA-CQ-6229-01	SYNE2	14	64020093	ITPK1	14	92993997	in-frame	3	39	SOMATIC	GRCh37	SYNE2-ITPK1
+TCGA-CQ-7063-01	CDKN2A	9	21974678	MTAP	9	21815433	in-frame	18	48	SOMATIC	GRCh37	CDKN2A-MTAP
+TCGA-CQ-7065-01	NXN	17	979319	WRAP53	17	7700741	in-frame	23	173	SOMATIC	GRCh37	NXN-WRAP53
+TCGA-CQ-7065-01	NOTCH2	1	120069334	SPAG17	1	117981401	in-frame	6	47	SOMATIC	GRCh37	NOTCH2-SPAG17
+TCGA-CQ-7065-01	BACH1	21	29329693	DSCR3	21	37240639	in-frame	5	25	SOMATIC	GRCh37	BACH1-DSCR3
+TCGA-CQ-7067-01	COLGALT1	19	17559421	PGLS	19	17516173	frameshift	1	17	SOMATIC	GRCh37	COLGALT1-PGLS
+TCGA-CQ-7068-01	ZNF57	19	2901048	MRE11	11	94461036	frameshift	1	1	SOMATIC	GRCh37	ZNF57-MRE11
+TCGA-CQ-7069-01	SERTAD2	2	64750281	TGFA	2	70465733		8	99	SOMATIC	GRCh37	SERTAD2-TGFA
+TCGA-CQ-7071-01	ACTG1	17	81512232	SPRR1B	1	153032327		1	9	SOMATIC	GRCh37	ACTG1-SPRR1B
+TCGA-CQ-7072-01	TMEM117	12	43944342	KIF16B	20	16312418	frameshift	4	24	SOMATIC	GRCh37	TMEM117-KIF16B
+TCGA-CQ-7072-01	TBL1X	X	9501849	WWC3	X	10090771		1	6	SOMATIC	GRCh37	TBL1X-WWC3
+TCGA-CQ-A4C6-01	CHSY1	15	101235255	PPP1CA	11	67401199	in-frame	4	49	SOMATIC	GRCh37	CHSY1-PPP1CA
+TCGA-CQ-A4C9-01	PAIP1	5	43555830	TMEM267	5	43446557	in-frame	2	22	SOMATIC	GRCh37	PAIP1-TMEM267
+TCGA-CQ-A4C9-01	ELP4	11	31650221	EIF3M	11	32594914	frameshift	1	12	SOMATIC	GRCh37	ELP4-EIF3M
+TCGA-CQ-A4C9-01	UXS1	2	106158058	TMEM241	18	23399647	in-frame	1	5	SOMATIC	GRCh37	UXS1-TMEM241
+TCGA-CQ-A4C9-01	CIR1	2	174395601	NFE2L2	2	177283805		1000	1000	SOMATIC	GRCh37	CIR1-NFE2L2
+TCGA-CQ-A4CA-01	GNA12	7	2843853	PHC3	3	170178938	frameshift	2	23	SOMATIC	GRCh37	GNA12-PHC3
+TCGA-CQ-A4CB-01	PPP1R2	3	195542904	GMNC	3	190860858	frameshift	1	4	SOMATIC	GRCh37	PPP1R2-GMNC
+TCGA-CQ-A4CG-01	MICU1	10	72475100	DNAJB12	10	72336696	frameshift	1	12	SOMATIC	GRCh37	MICU1-DNAJB12
+TCGA-CQ-A4CH-01	EHBP1	2	62874532	MDH1	2	63594488	in-frame	28	137	SOMATIC	GRCh37	EHBP1-MDH1
+TCGA-CQ-A4CH-01	CHST10	2	100402564	MAP4K4	2	101823928	in-frame	19	81	SOMATIC	GRCh37	CHST10-MAP4K4
+TCGA-CQ-A4CH-01	ITSN1	21	33642713	CHODL	21	17917220		1	28	SOMATIC	GRCh37	ITSN1-CHODL
+TCGA-CQ-A4CH-01	PAPLN	14	73274459	MYL4	17	47209389		4	13	SOMATIC	GRCh37	PAPLN-MYL4
+TCGA-CQ-A4CH-01	TRAPPC10	21	44012560	MDS2	1	23639680	frameshift	2	6	SOMATIC	GRCh37	TRAPPC10-MDS2
+TCGA-CQ-A4CI-01	SH2D3A	19	6767387	GPM6A	4	175651987		7	38	SOMATIC	GRCh37	SH2D3A-GPM6A
+TCGA-CR-5243-01	COPS7A	12	6724818	RPLP0	12	120197462	in-frame	1	1	SOMATIC	GRCh37	COPS7A-RPLP0
+TCGA-CR-5247-01	CLN3	16	28484006	C15orf32	15	92500358		5	18	SOMATIC	GRCh37	CLN3-C15orf32
+TCGA-CR-5247-01	TFDP2	3	142093061	COG5	7	107324521	frameshift	2	29	SOMATIC	GRCh37	TFDP2-COG5
+TCGA-CR-5247-01	NADSYN1	11	71458544	GSTP1	11	67584685	frameshift	1	3	SOMATIC	GRCh37	NADSYN1-GSTP1
+TCGA-CR-5248-01	MAGI1	3	65621972	DPH3	3	16260829	frameshift	2	3	SOMATIC	GRCh37	MAGI1-DPH3
+TCGA-CR-5250-01	SESN1	6	109093795	CENPW	6	126346205	in-frame	1	3	SOMATIC	GRCh37	SESN1-CENPW
+TCGA-CR-5250-01	ZFP36	19	39406928	OAZ1	19	2271385	frameshift	1	1	SOMATIC	GRCh37	ZFP36-OAZ1
+TCGA-CR-6467-01	TRIP12	2	229879982	PID1	2	229155964	frameshift	12	57	SOMATIC	GRCh37	TRIP12-PID1
+TCGA-CR-6467-01	ABCC4	13	95177707	ABCB4	7	87409392	in-frame	4	73	SOMATIC	GRCh37	ABCC4-ABCB4
+TCGA-CR-6467-01	TTC12	11	113344440	LUC7L2	7	139412551	in-frame	3	16	SOMATIC	GRCh37	TTC12-LUC7L2
+TCGA-CR-6467-01	MTDH	8	97644887	MATN2	8	97961408	in-frame	4	5	SOMATIC	GRCh37	MTDH-MATN2
+TCGA-CR-6467-01	CLDN10	13	95577338	TTC12	11	113350073	in-frame	2	3	SOMATIC	GRCh37	CLDN10-TTC12
+TCGA-CR-6470-01	PLEKHA5	12	19132450	DCTN2	12	57535845	frameshift	1	4	SOMATIC	GRCh37	PLEKHA5-DCTN2
+TCGA-CR-6473-01	FGFR3	4	1806934	TACC3	4	1737598	in-frame	268	1764	SOMATIC	GRCh37	FGFR3-TACC3
+TCGA-CR-6474-01	TFB2M	1	246564346	SMYD3	1	246335474	in-frame	21	96	SOMATIC	GRCh37	TFB2M-SMYD3
+TCGA-CR-6474-01	MVP	16	29831073	ZNF267	16	31914476	frameshift	15	54	SOMATIC	GRCh37	MVP-ZNF267
+TCGA-CR-6478-01	TMBIM4	12	66169855	TMEM131	2	97814388	frameshift	10	96	SOMATIC	GRCh37	TMBIM4-TMEM131
+TCGA-CR-6478-01	ANKRD23	2	96857888	FAM178B	2	96902707		16	44	SOMATIC	GRCh37	ANKRD23-FAM178B
+TCGA-CR-6478-01	KIF21A	12	39442927	TSPAN8	12	71157787		16	42	SOMATIC	GRCh37	KIF21A-TSPAN8
+TCGA-CR-6478-01	GPI	19	34396430	EYS	6	65057727	in-frame	9	56	SOMATIC	GRCh37	GPI-EYS
+TCGA-CR-6478-01	HSD17B12	11	43816391	TP53I11	11	44939190		4	12	SOMATIC	GRCh37	HSD17B12-TP53I11
+TCGA-CR-6478-01	CAV2	7	116500447	TES	7	116249020	in-frame	2	5	SOMATIC	GRCh37	CAV2-TES
+TCGA-CR-6480-01	C1orf174	1	3892883	RAD18	3	8881459	frameshift	30	106	SOMATIC	GRCh37	C1orf174-RAD18
+TCGA-CR-6480-01	PPARA	22	46151970	SLC16A7	12	59655152		4	44	SOMATIC	GRCh37	PPARA-SLC16A7
+TCGA-CR-6481-01	KIF21A	12	39331730	IGKJ3	2	88861257	frameshift	59	0	SOMATIC	GRCh37	KIF21A-IGKJ3
+TCGA-CR-6481-01	CMC1	3	28241812	ZCWPW2	3	28435110	frameshift	2	12	SOMATIC	GRCh37	CMC1-ZCWPW2
+TCGA-CR-6482-01	ABCB9	12	122966287	MPHOSPH9	12	123166789		1	7	SOMATIC	GRCh37	ABCB9-MPHOSPH9
+TCGA-CR-6484-01	CDKL3	5	134319471	IGKJ2	2	88861559	in-frame	28	0	SOMATIC	GRCh37	CDKL3-IGKJ2
+TCGA-CR-6484-01	AGAP1	2	235494849	UBE2F	2	237973092		7	49	SOMATIC	GRCh37	AGAP1-UBE2F
+TCGA-CR-6487-01	SNHG19	16	2154860	CSF1R	5	150086607		33	262	SOMATIC	GRCh37	SNHG19-CSF1R
+TCGA-CR-6487-01	TSC1	9	132921363	DOLPP1	9	129086709	in-frame	16	62	SOMATIC	GRCh37	TSC1-DOLPP1
+TCGA-CR-6488-01	IP6K1	3	49786354	TRAIP	3	49840373		1	26	SOMATIC	GRCh37	IP6K1-TRAIP
+TCGA-CR-6488-01	AATF	17	37031685	PCDH11X	X	92618264	frameshift	2	12	SOMATIC	GRCh37	AATF-PCDH11X
+TCGA-CR-7364-01	ASH2L	8	38110833	LINC03042	8	38516512	in-frame	6	10	SOMATIC	GRCh37	ASH2L-LINC03042
+TCGA-CR-7364-01	EIF4EBP1	8	38030718	TACC1	8	38846699	frameshift	4	4	SOMATIC	GRCh37	EIF4EBP1-TACC1
+TCGA-CR-7367-01	TFB2M	1	246548545	SMYD3	1	245929937	in-frame	28	39	SOMATIC	GRCh37	TFB2M-SMYD3
+TCGA-CR-7367-01	TIAM1	21	31339243	PCBP3	21	45896208		7	19	SOMATIC	GRCh37	TIAM1-PCBP3
+TCGA-CR-7367-01	XXYLT1	3	195156449	OPA1	3	193614723	in-frame	2	2	SOMATIC	GRCh37	XXYLT1-OPA1
+TCGA-CR-7368-01	EGFR	7	55019365	SEPT14	7	55807258	in-frame	1	7	SOMATIC	GRCh37	EGFR-SEPT14
+TCGA-CR-7370-01	SLBP	4	1694774	LETM1	4	1825683	in-frame	16	112	SOMATIC	GRCh37	SLBP-LETM1
+TCGA-CR-7370-01	PSMD14	2	161385571	CCDC148	2	158220713	in-frame	1	4	SOMATIC	GRCh37	PSMD14-CCDC148
+TCGA-CR-7371-01	ROCK1	18	21110818	RPL29	3	51995880		12	15	SOMATIC	GRCh37	ROCK1-RPL29
+TCGA-CR-7371-01	SH3GL1	19	4400324	STAP2	19	4334044	in-frame	1000	1000	SOMATIC	GRCh37	SH3GL1-STAP2
+TCGA-CR-7374-01	CREBBP	16	3850297	ATG10	5	82058495	in-frame	6	30	SOMATIC	GRCh37	CREBBP-ATG10
+TCGA-CR-7374-01	IGKC	2	88857255	SPSB1	1	9356106		6	1	SOMATIC	GRCh37	IGKC-SPSB1
+TCGA-CR-7374-01	CSDE1	1	114737999	CYB5B	16	69430154		4	5	SOMATIC	GRCh37	CSDE1-CYB5B
+TCGA-CR-7374-01	TYW1	7	67195337	SIRPB2	20	1480065	frameshift	2	5	SOMATIC	GRCh37	TYW1-SIRPB2
+TCGA-CR-7374-01	RALY	20	34031604	RPN2	20	37223878		1	8	SOMATIC	GRCh37	RALY-RPN2
+TCGA-CR-7374-01	HSD11B1L	19	5687668	SAFB	19	5664022	in-frame	1	5	SOMATIC	GRCh37	HSD11B1L-SAFB
+TCGA-CR-7376-01	APTX	9	33001567	NOL6	9	33472412	in-frame	6	9	SOMATIC	GRCh37	APTX-NOL6
+TCGA-CR-7376-01	CNTFR	9	34581095	KIF24	9	34297114		1	19	SOMATIC	GRCh37	CNTFR-KIF24
+TCGA-CR-7376-01	CHMP5	9	33276564	GALT	9	34646677		2	4	SOMATIC	GRCh37	CHMP5-GALT
+TCGA-CR-7376-01	NFX1	9	33319127	ARHGEF39	9	35664126	frameshift	1	3	SOMATIC	GRCh37	NFX1-ARHGEF39
+TCGA-CR-7376-01	UNC13B	9	35162305	DNAJB5	9	34993200	frameshift	1	1	SOMATIC	GRCh37	UNC13B-DNAJB5
+TCGA-CR-7377-01	PARD3	10	34814876	ARMC4	10	27907777	frameshift	4	25	SOMATIC	GRCh37	PARD3-ARMC4
+TCGA-CR-7377-01	ERC1	12	1116033	ANKRD26	10	27005723	frameshift	1	3	SOMATIC	GRCh37	ERC1-ANKRD26
+TCGA-CR-7379-01	DSG1	18	31340025	DSCAS	18	31150799		6	12	SOMATIC	GRCh37	DSG1-DSCAS
+TCGA-CR-7379-01	GAS6	13	113846527	ATP4B	13	113654942	in-frame	4	10	SOMATIC	GRCh37	GAS6-ATP4B
+TCGA-CR-7379-01	NUDT3	6	34392264	CDH12	5	21817132	frameshift	1	9	SOMATIC	GRCh37	NUDT3-CDH12
+TCGA-CR-7379-01	ZC3H4	19	47081513	SAE1	19	47203671	frameshift	1	4	SOMATIC	GRCh37	ZC3H4-SAE1
+TCGA-CR-7380-01	IDH3A	15	78149430	SH2D7	15	78094116	in-frame	4	2	SOMATIC	GRCh37	IDH3A-SH2D7
+TCGA-CR-7382-01	RNH1	11	507113	HRAS	11	533944		51	314	SOMATIC	GRCh37	RNH1-HRAS
+TCGA-CR-7382-01	NFRKB	11	129892715	FEN1	11	61796922	in-frame	1	10	SOMATIC	GRCh37	NFRKB-FEN1
+TCGA-CR-7383-01	DCUN1D4	4	51863709	GPM6B	X	13785808	in-frame	9	49	SOMATIC	GRCh37	DCUN1D4-GPM6B
+TCGA-CR-7383-01	PCMTD1	8	51898930	ARHGAP26	5	143207198	in-frame	2	1	SOMATIC	GRCh37	PCMTD1-ARHGAP26
+TCGA-CR-7385-01	TRIM25	17	56892018	TRIM37	17	58982921	frameshift	14	43	SOMATIC	GRCh37	TRIM25-TRIM37
+TCGA-CR-7386-01	MAP2K5	15	67543470	RAB27A	15	55234956		1	6	SOMATIC	GRCh37	MAP2K5-RAB27A
+TCGA-CR-7388-01	RAP1GDS1	4	98352601	GSTCD	4	105845441	in-frame	4	9	SOMATIC	GRCh37	RAP1GDS1-GSTCD
+TCGA-CR-7388-01	CBFB	16	67029813	ATP13A3	3	194462236		1	9	SOMATIC	GRCh37	CBFB-ATP13A3
+TCGA-CR-7389-01	ADAM17	2	9555509	ITGB1BP1	2	9418732		1	12	SOMATIC	GRCh37	ADAM17-ITGB1BP1
+TCGA-CR-7390-01	SHC1	1	154965543	EFNA3	1	155085091	frameshift	7	51	SOMATIC	GRCh37	SHC1-EFNA3
+TCGA-CR-7390-01	SPIDR	8	47713641	SNX7	1	98760054	frameshift	7	20	SOMATIC	GRCh37	SPIDR-SNX7
+TCGA-CR-7392-01	LRRC1	6	53795415	MLIP	6	54124473	in-frame	3	24	SOMATIC	GRCh37	LRRC1-MLIP
+TCGA-CR-7392-01	CUX1	7	102115273	CAV2	7	116316432		2	11	SOMATIC	GRCh37	CUX1-CAV2
+TCGA-CR-7392-01	ROCK2	2	11192148	LPIN1	2	11765533	frameshift	1	3	SOMATIC	GRCh37	ROCK2-LPIN1
+TCGA-CR-7395-01	GNB1	1	1890820	NADK	1	1757310		11	15	SOMATIC	GRCh37	GNB1-NADK
+TCGA-CR-7397-01	SCMH1	1	41186121	SHISA5	3	48501293	in-frame	2	34	SOMATIC	GRCh37	SCMH1-SHISA5
+TCGA-CR-7397-01	ITCH	20	34424525	CASS4	20	56445900	frameshift	2	15	SOMATIC	GRCh37	ITCH-CASS4
+TCGA-CR-7399-01	AK3	9	4722506	RCL1	9	4823548	in-frame	44	168	SOMATIC	GRCh37	AK3-RCL1
+TCGA-CR-7399-01	DGCR2	22	19122128	ANO1	11	70103066	frameshift	28	123	SOMATIC	GRCh37	DGCR2-ANO1
+TCGA-CR-7399-01	VTI1B	14	67656416	PLEKHH1	14	67585568	in-frame	7	47	SOMATIC	GRCh37	VTI1B-PLEKHH1
+TCGA-CR-7401-01	APP	21	26021840	FRG2LP	18	14138856		12	80	SOMATIC	GRCh37	APP-FRG2LP
+TCGA-CR-7402-01	DSG2	18	31541314	DSG4	18	31399272	in-frame	62	275	SOMATIC	GRCh37	DSG2-DSG4
+TCGA-CR-7402-01	VCL	10	74043153	SEC24C	10	73766760	in-frame	30	103	SOMATIC	GRCh37	VCL-SEC24C
+TCGA-CR-7404-01	EFNA1	1	155128069	FLAD1	1	154989560	frameshift	1	4	SOMATIC	GRCh37	EFNA1-FLAD1
+TCGA-CV-5430-01	OSGIN2	8	89914746	RIPK2	8	89786593	in-frame	27	61	SOMATIC	GRCh37	OSGIN2-RIPK2
+TCGA-CV-5430-01	PHF8	X	54022259	SLCO1C1	12	20717132	frameshift	1	7	SOMATIC	GRCh37	PHF8-SLCO1C1
+TCGA-CV-5431-01	FBXL20	17	39401361	UNC45B	17	35171322	in-frame	33	117	SOMATIC	GRCh37	FBXL20-UNC45B
+TCGA-CV-5431-01	IGHGP	14	105668254	NOTCH1	9	136508977		11	1	SOMATIC	GRCh37	IGHGP-NOTCH1
+TCGA-CV-5431-01	TGFBRAP1	2	105296356	CCDC146	7	77236947	in-frame	1	3	SOMATIC	GRCh37	TGFBRAP1-CCDC146
+TCGA-CV-5431-01	ERBB2	17	39715939	CTTN	11	70422940	in-frame	1	1	SOMATIC	GRCh37	ERBB2-CTTN
+TCGA-CV-5432-01	PFKFB4	3	48521986	COL7A1	3	48571278	in-frame	1	5	SOMATIC	GRCh37	PFKFB4-COL7A1
+TCGA-CV-5434-01	PTPRZ1	7	122055087	TSPAN33	7	129161679	in-frame	14	83	SOMATIC	GRCh37	PTPRZ1-TSPAN33
+TCGA-CV-5434-01	ROCK1	18	21006351	DCC	18	53386043	in-frame	10	44	SOMATIC	GRCh37	ROCK1-DCC
+TCGA-CV-5434-01	NLK	17	28043331	RAD51D	17	35106481	frameshift	3	10	SOMATIC	GRCh37	NLK-RAD51D
+TCGA-CV-5434-01	NLK	17	28043331	RAD51L3-RFFL	17	35106481	frameshift	3	10	SOMATIC	GRCh37	NLK-RAD51L3-RFFL
+TCGA-CV-5436-01	SLX4IP	20	10458231	SLC24A3	20	19280959	frameshift	2	12	SOMATIC	GRCh37	SLX4IP-SLC24A3
+TCGA-CV-5436-01	AHR	7	17310123	TSPAN13	7	16783417	frameshift	1	3	SOMATIC	GRCh37	AHR-TSPAN13
+TCGA-CV-5440-01	FHOD3	18	36687178	MS4A15	11	60763706		3	12	SOMATIC	GRCh37	FHOD3-MS4A15
+TCGA-CV-5440-01	DTD1	20	18628233	RALGAPA2	20	20546832	in-frame	3	6	SOMATIC	GRCh37	DTD1-RALGAPA2
+TCGA-CV-5440-01	USP8	15	50490525	MYEF2	15	48168839	in-frame	2	9	SOMATIC	GRCh37	USP8-MYEF2
+TCGA-CV-5441-01	DDX1	2	15596763	C3orf67	3	58806456	in-frame	1	1	SOMATIC	GRCh37	DDX1-C3orf67
+TCGA-CV-5442-01	PKP1	1	201332903	JUP	17	41755174		3	7	SOMATIC	GRCh37	PKP1-JUP
+TCGA-CV-5443-01	ITCH	20	34471515	DEFB118	20	31372857	frameshift	47	258	SOMATIC	GRCh37	ITCH-DEFB118
+TCGA-CV-5443-01	SLC26A11	17	80237594	OAF	11	120228868	in-frame	2	11	SOMATIC	GRCh37	SLC26A11-OAF
+TCGA-CV-5443-01	PLGRKT	9	5431897	CD274	9	5456100		1	10	SOMATIC	GRCh37	PLGRKT-CD274
+TCGA-CV-5444-01	ESYT2	7	158748194	CNTNAP2	7	147043907	in-frame	1	20	SOMATIC	GRCh37	ESYT2-CNTNAP2
+TCGA-CV-5444-01	PRR4	12	11121010	SPSB2	12	6882287		2	9	SOMATIC	GRCh37	PRR4-SPSB2
+TCGA-CV-5970-01	ACAP2	3	195442795	IQCG	3	197914042	frameshift	1	26	SOMATIC	GRCh37	ACAP2-IQCG
+TCGA-CV-5970-01	HSPB11	1	53939985	ZCCHC11	1	52497183	frameshift	1	6	SOMATIC	GRCh37	HSPB11-ZCCHC11
+TCGA-CV-5971-01	MYBPC2	19	50452003	DES	2	219421340	in-frame	1	9	SOMATIC	GRCh37	MYBPC2-DES
+TCGA-CV-5973-01	NFYA	6	41094497	TSPO2	6	41042966		4	36	SOMATIC	GRCh37	NFYA-TSPO2
+TCGA-CV-5973-01	OTUB1	11	63988752	RPS6KA4	11	64365301	in-frame	3	14	SOMATIC	GRCh37	OTUB1-RPS6KA4
+TCGA-CV-5978-01	ADD1	4	2844024	ADK	10	74394141		7	30	SOMATIC	GRCh37	ADD1-ADK
+TCGA-CV-5979-01	GABARAP	17	7241424	GPS2	17	7314659		28	63	SOMATIC	GRCh37	GABARAP-GPS2
+TCGA-CV-5979-01	IPO9	1	201871327	CSRP1	1	201496304		1	1	SOMATIC	GRCh37	IPO9-CSRP1
+TCGA-CV-6433-01	RALY	20	34031604	ASXL1	20	32428128		3	12	SOMATIC	GRCh37	RALY-ASXL1
+TCGA-CV-6441-01	HSPB11	1	53923904	NDC1	1	53772489	in-frame	5	54	SOMATIC	GRCh37	HSPB11-NDC1
+TCGA-CV-6441-01	OPA3	19	45584623	EML2	19	45642352	in-frame	3	30	SOMATIC	GRCh37	OPA3-EML2
+TCGA-CV-6933-01	CLNS1A	11	77637590	DCBLD1	6	117532260	frameshift	2	1	SOMATIC	GRCh37	CLNS1A-DCBLD1
+TCGA-CV-6935-01	ATAD2	8	123369058	ERBB4	2	211665477	frameshift	5	24	SOMATIC	GRCh37	ATAD2-ERBB4
+TCGA-CV-6936-01	LMAN2L	2	96734409	FAM178B	2	96929320	in-frame	2	29	SOMATIC	GRCh37	LMAN2L-FAM178B
+TCGA-CV-6937-01	PI4KA	22	20793193	CCDC74BP1	22	20592100		48	193	SOMATIC	GRCh37	PI4KA-CCDC74BP1
+TCGA-CV-6937-01	FKBP1A	20	1392834	CDS2	20	5189067	frameshift	10	64	SOMATIC	GRCh37	FKBP1A-CDS2
+TCGA-CV-6937-01	ATP11B	3	182869331	TFRC	3	196058632	in-frame	4	30	SOMATIC	GRCh37	ATP11B-TFRC
+TCGA-CV-6937-01	SMPD4P1	22	20613663	KLHL22	22	20471515		6	10	SOMATIC	GRCh37	SMPD4P1-KLHL22
+TCGA-CV-6937-01	KIAA1549L	11	33574873	WARS2	1	119076607	frameshift	4	10	SOMATIC	GRCh37	KIAA1549L-WARS2
+TCGA-CV-6937-01	KLHL22	22	20464858	KIAA1549L	11	33656012	frameshift	1	5	SOMATIC	GRCh37	KLHL22-KIAA1549L
+TCGA-CV-6938-01	MBD5	2	148021684	ACVR2A	2	147896301		1	6	SOMATIC	GRCh37	MBD5-ACVR2A
+TCGA-CV-6939-01	ZNF718	4	131505	PLEKHG4B	5	139483	frameshift	4	28	SOMATIC	GRCh37	ZNF718-PLEKHG4B
+TCGA-CV-6939-01	NAALADL1	11	65045822	PATL1	11	59654072	in-frame	1	14	SOMATIC	GRCh37	NAALADL1-PATL1
+TCGA-CV-6939-01	LRP5	11	68446533	HSCB	22	28743882	in-frame	1	2	SOMATIC	GRCh37	LRP5-HSCB
+TCGA-CV-6940-01	NAA25	12	112087683	SLC25A21	14	36684925	in-frame	18	154	SOMATIC	GRCh37	NAA25-SLC25A21
+TCGA-CV-6940-01	FAM234A	16	249658	LUC7L	16	208188		2	24	SOMATIC	GRCh37	FAM234A-LUC7L
+TCGA-CV-6941-01	EGFR	7	55019365	ACADM	1	75732644	in-frame	32	172	SOMATIC	GRCh37	EGFR-ACADM
+TCGA-CV-6941-01	TBC1D22A	22	46997709	GCAT	22	37810027	in-frame	5	27	SOMATIC	GRCh37	TBC1D22A-GCAT
+TCGA-CV-6941-01	LPP	3	188609844	P3H2	3	189995442	in-frame	2	32	SOMATIC	GRCh37	LPP-P3H2
+TCGA-CV-6941-01	LIMK2	22	31258426	ATXN10	22	45806959	in-frame	3	22	SOMATIC	GRCh37	LIMK2-ATXN10
+TCGA-CV-6941-01	TP63	3	189808526	CYTH3	7	6190531	frameshift	4	16	SOMATIC	GRCh37	TP63-CYTH3
+TCGA-CV-6941-01	CELSR1	22	46463707	PACSIN2	22	42912157		4	12	SOMATIC	GRCh37	CELSR1-PACSIN2
+TCGA-CV-6941-01	ATXN10	22	45740538	TUBGCP6	22	50228028	in-frame	2	13	SOMATIC	GRCh37	ATXN10-TUBGCP6
+TCGA-CV-6941-01	FUS	16	31184396	PRSS36	16	31149731	in-frame	1	11	SOMATIC	GRCh37	FUS-PRSS36
+TCGA-CV-6941-01	SH3BP1	22	37643788	CACNA1I	22	39661965	in-frame	2	7	SOMATIC	GRCh37	SH3BP1-CACNA1I
+TCGA-CV-6941-01	ARHGEF2	1	155978067	SMG5	1	156274686		1	9	SOMATIC	GRCh37	ARHGEF2-SMG5
+TCGA-CV-6941-01	PRR14L	22	31738387	SOX10	22	37983868		2	5	SOMATIC	GRCh37	PRR14L-SOX10
+TCGA-CV-6941-01	SMARCB1	22	23825415	ACR	22	50744061	frameshift	1	8	SOMATIC	GRCh37	SMARCB1-ACR
+TCGA-CV-6948-01	TTC38	22	46278661	NACAP1	8	101367623		33	136	SOMATIC	GRCh37	TTC38-NACAP1
+TCGA-CV-6948-01	ZNF410	14	73909430	LIN52	14	74198922	in-frame	5	38	SOMATIC	GRCh37	ZNF410-LIN52
+TCGA-CV-6948-01	YME1L1	10	27142387	ANKRD26	10	26995147	frameshift	4	37	SOMATIC	GRCh37	YME1L1-ANKRD26
+TCGA-CV-6948-01	DGCR8	22	20080383	SGSM1	22	24844897		5	30	SOMATIC	GRCh37	DGCR8-SGSM1
+TCGA-CV-6948-01	MKRN2	3	12576741	C12orf75	12	105326970		2	22	SOMATIC	GRCh37	MKRN2-C12orf75
+TCGA-CV-6948-01	ERC1	12	991487	GRK3	22	25604377		1	17	SOMATIC	GRCh37	ERC1-GRK3
+TCGA-CV-6948-01	LHPP	10	124484326	TANGO6	16	69022828	in-frame	2	11	SOMATIC	GRCh37	LHPP-TANGO6
+TCGA-CV-6948-01	MRPS6	21	34073745	MYO3A	10	26201265	in-frame	2	11	SOMATIC	GRCh37	MRPS6-MYO3A
+TCGA-CV-6948-01	SLC5A3	21	34073745	MYO3A	10	26201265		2	11	SOMATIC	GRCh37	SLC5A3-MYO3A
+TCGA-CV-6948-01	ATP10D	4	47485519	GABRB1	4	47031914		1	3	SOMATIC	GRCh37	ATP10D-GABRB1
+TCGA-CV-6950-01	ABL1	9	130714455	EXOSC2	9	130695492	frameshift	2	11	SOMATIC	GRCh37	ABL1-EXOSC2
+TCGA-CV-6951-01	AAMDC	11	77842628	SCGB1D1	11	62192056	frameshift	1	4	SOMATIC	GRCh37	AAMDC-SCGB1D1
+TCGA-CV-6953-01	USP9X	X	41162877	MRPS31	13	40729601	frameshift	3	61	SOMATIC	GRCh37	USP9X-MRPS31
+TCGA-CV-6953-01	S100A9	1	153358361	IGHG1	14	105742844	frameshift	3	59	SOMATIC	GRCh37	S100A9-IGHG1
+TCGA-CV-6953-01	SELENOW	19	47780749	EHD2	19	47716558		3	34	SOMATIC	GRCh37	SELENOW-EHD2
+TCGA-CV-6953-01	ROCK1	18	21110818	B4GALT6	18	31666372	frameshift	5	18	SOMATIC	GRCh37	ROCK1-B4GALT6
+TCGA-CV-6953-01	IKBKG	X	154547745	GAB3	X	154716329		3	21	SOMATIC	GRCh37	IKBKG-GAB3
+TCGA-CV-6953-01	TRAPPC9	8	140405577	PTK2	8	140686694	in-frame	3	19	SOMATIC	GRCh37	TRAPPC9-PTK2
+TCGA-CV-6953-01	ASCC1	10	72196811	MICU1	10	72408037	in-frame	2	3	SOMATIC	GRCh37	ASCC1-MICU1
+TCGA-CV-6953-01	PARD3	10	34331117	HTRA1	10	122488902	in-frame	1	6	SOMATIC	GRCh37	PARD3-HTRA1
+TCGA-CV-6953-01	SPRR2E	1	153093553	SPRR2G	1	153150031	in-frame	1000	1000	SOMATIC	GRCh37	SPRR2E-SPRR2G
+TCGA-CV-6954-01	FHOD3	18	36372744	MOCOS	18	36256968	in-frame	2	14	SOMATIC	GRCh37	FHOD3-MOCOS
+TCGA-CV-6956-01	FSCN1	7	5605384	FBXL18	7	5438651		6	21	SOMATIC	GRCh37	FSCN1-FBXL18
+TCGA-CV-6959-01	TPX2	20	31778984	RALY	20	34072066		19	81	SOMATIC	GRCh37	TPX2-RALY
+TCGA-CV-6961-01	TMED10	14	75176355	TTLL5	14	75820007	in-frame	42	164	SOMATIC	GRCh37	TMED10-TTLL5
+TCGA-CV-6961-01	CUX1	7	102070417	THSD7A	7	11636961	in-frame	1	26	SOMATIC	GRCh37	CUX1-THSD7A
+TCGA-CV-6961-01	TTLL5	14	75793100	TMED10	14	75152143	in-frame	3	10	SOMATIC	GRCh37	TTLL5-TMED10
+TCGA-CV-6961-01	PCNT	21	46391376	POC1A	3	52075985	frameshift	1	3	SOMATIC	GRCh37	PCNT-POC1A
+TCGA-CV-6961-01	EED	11	86250449	HIKESHI	11	86306246		1000	1000	SOMATIC	GRCh37	EED-HIKESHI
+TCGA-CV-6962-01	C6orf48	6	31837435	TRIM40	6	30136412		3	5	SOMATIC	GRCh37	C6orf48-TRIM40
+TCGA-CV-7090-01	DHX15	4	24548855	RBPJ	4	26386353	frameshift	6	21	SOMATIC	GRCh37	DHX15-RBPJ
+TCGA-CV-7090-01	NRP2	2	205683363	PARD3B	2	205553324	frameshift	5	14	SOMATIC	GRCh37	NRP2-PARD3B
+TCGA-CV-7091-01	XPR1	1	180836716	TOR3A	1	179097828	in-frame	25	111	SOMATIC	GRCh37	XPR1-TOR3A
+TCGA-CV-7097-01	MCTP1	5	94923962	TNC	9	115021267	in-frame	9	18	SOMATIC	GRCh37	MCTP1-TNC
+TCGA-CV-7097-01	HELZ2	20	63572108	FNDC11	20	63555654		3	9	SOMATIC	GRCh37	HELZ2-FNDC11
+TCGA-CV-7099-01	LINC-PINT	7	131052425	GNGT1	7	93886506		5	3	SOMATIC	GRCh37	LINC-PINT-GNGT1
+TCGA-CV-7099-01	DLST	14	74889349	AHSA1	14	77464598	in-frame	1	1	SOMATIC	GRCh37	DLST-AHSA1
+TCGA-CV-7100-01	FGFR3	4	1806934	TACC3	4	1739702	in-frame	567	2161	SOMATIC	GRCh37	FGFR3-TACC3
+TCGA-CV-7100-01	LDLR	19	11089615	HSH2D	19	16152552	frameshift	89	347	SOMATIC	GRCh37	LDLR-HSH2D
+TCGA-CV-7100-01	SART1	11	65967821	CNTN5	11	99819544	frameshift	6	21	SOMATIC	GRCh37	SART1-CNTN5
+TCGA-CV-7101-01	RIOK3	18	23453502	TAF4B	18	26389845	in-frame	11	34	SOMATIC	GRCh37	RIOK3-TAF4B
+TCGA-CV-7101-01	GGCT	7	30498803	ZNRF2	7	30323642	frameshift	2	13	SOMATIC	GRCh37	GGCT-ZNRF2
+TCGA-CV-7101-01	TBL1XR1	3	177197121	KIAA1456	8	13006202		1	9	SOMATIC	GRCh37	TBL1XR1-KIAA1456
+TCGA-CV-7102-01	MGRN1	16	4665151	SNX29	16	12477719	in-frame	4	11	SOMATIC	GRCh37	MGRN1-SNX29
+TCGA-CV-7102-01	EFL1	15	82214717	CDADC1	13	49274291	in-frame	3	9	SOMATIC	GRCh37	EFL1-CDADC1
+TCGA-CV-7103-01	ACTL6A	3	179570241	ALG3	3	184245812	in-frame	36	129	SOMATIC	GRCh37	ACTL6A-ALG3
+TCGA-CV-7103-01	DNAJC19	3	180988023	ADK	10	74525256	in-frame	19	112	SOMATIC	GRCh37	DNAJC19-ADK
+TCGA-CV-7103-01	FRMD6	14	51491534	ABHD12B	14	50901829		2	1	SOMATIC	GRCh37	FRMD6-ABHD12B
+TCGA-CV-7104-01	LAMA3	18	23777619	SNRPD1	18	21629062	in-frame	34	217	SOMATIC	GRCh37	LAMA3-SNRPD1
+TCGA-CV-7104-01	CD72	9	35646403	TLN1	9	35703676		1	34	SOMATIC	GRCh37	CD72-TLN1
+TCGA-CV-7104-01	ACTB	7	5529535	COL17A1	10	104041344	frameshift	1	7	SOMATIC	GRCh37	ACTB-COL17A1
+TCGA-CV-7177-01	PSMD1	2	231146356	ATP2C1	3	130940630	in-frame	2	33	SOMATIC	GRCh37	PSMD1-ATP2C1
+TCGA-CV-7177-01	DIP2C	10	472439	TECTA	11	121125302	frameshift	1	8	SOMATIC	GRCh37	DIP2C-TECTA
+TCGA-CV-7235-01	SLC39A6	18	36114097	MAST2	1	46019596	frameshift	20	34	SOMATIC	GRCh37	SLC39A6-MAST2
+TCGA-CV-7235-01	MACF1	1	39105717	AKIRIN1	1	38998171	in-frame	18	38	SOMATIC	GRCh37	MACF1-AKIRIN1
+TCGA-CV-7235-01	CAP1	1	40061812	KCNQ4	1	40819875	in-frame	19	32	SOMATIC	GRCh37	CAP1-KCNQ4
+TCGA-CV-7235-01	ARHGAP42	11	100687832	YAP1	11	102205893	in-frame	5	25	SOMATIC	GRCh37	ARHGAP42-YAP1
+TCGA-CV-7235-01	ZNF385B	2	179861101	FKBP7	2	178465931		4	26	SOMATIC	GRCh37	ZNF385B-FKBP7
+TCGA-CV-7235-01	MAST2	1	46023980	CARD16	11	105044658	in-frame	1	4	SOMATIC	GRCh37	MAST2-CARD16
+TCGA-CV-7236-01	RNF216	7	5725324	MTHFD1L	6	151009819	in-frame	20	63	SOMATIC	GRCh37	RNF216-MTHFD1L
+TCGA-CV-7236-01	MTHFD1L	6	150972058	RNF216	7	5721172	in-frame	2	12	SOMATIC	GRCh37	MTHFD1L-RNF216
+TCGA-CV-7238-01	ZC3H3	8	143536257	TOP1MT	8	143331339	frameshift	5	30	SOMATIC	GRCh37	ZC3H3-TOP1MT
+TCGA-CV-7238-01	GLIPR2	9	36150949	GALT	9	34646677		2	4	SOMATIC	GRCh37	GLIPR2-GALT
+TCGA-CV-7238-01	KLHL5	4	39045096	SLC16A2	X	74520990		2	3	SOMATIC	GRCh37	KLHL5-SLC16A2
+TCGA-CV-7242-01	PER3	1	7794008	CAMTA1	1	7732448	frameshift	1	3	SOMATIC	GRCh37	PER3-CAMTA1
+TCGA-CV-7245-01	HNRNPUL1	19	41281275	BCKDHA	19	41410637	in-frame	11	194	SOMATIC	GRCh37	HNRNPUL1-BCKDHA
+TCGA-CV-7247-01	SRRM2	16	2760499	PRSS33	16	2786604		6	48	SOMATIC	GRCh37	SRRM2-PRSS33
+TCGA-CV-7247-01	PANX1	11	94129493	HEPHL1	11	94093501	frameshift	2	15	SOMATIC	GRCh37	PANX1-HEPHL1
+TCGA-CV-7247-01	INIP	9	112716461	C9orf84	9	111786035	frameshift	3	4	SOMATIC	GRCh37	INIP-C9orf84
+TCGA-CV-7248-01	CENPC	4	67518156	STAP1	4	67558752		14	98	SOMATIC	GRCh37	CENPC-STAP1
+TCGA-CV-7248-01	DST	6	56503997	FBLN5	14	91937201	frameshift	20	51	SOMATIC	GRCh37	DST-FBLN5
+TCGA-CV-7248-01	MPP6	7	24623784	OSBPL3	7	24863599	frameshift	6	23	SOMATIC	GRCh37	MPP6-OSBPL3
+TCGA-CV-7248-01	SACS	13	23358335	PHF3	6	63778066	in-frame	2	6	SOMATIC	GRCh37	SACS-PHF3
+TCGA-CV-7253-01	DHCR24	1	54854037	PCNX2	1	233179175	in-frame	105	338	SOMATIC	GRCh37	DHCR24-PCNX2
+TCGA-CV-7253-01	PXN	12	120221623	MSI1	12	120343105		43	192	SOMATIC	GRCh37	PXN-MSI1
+TCGA-CV-7253-01	NOL9	1	6554107	DNAJC11	1	6681037	in-frame	7	30	SOMATIC	GRCh37	NOL9-DNAJC11
+TCGA-CV-7253-01	GRHL2	8	101492789	TRIM13	13	49997667		5	24	SOMATIC	GRCh37	GRHL2-TRIM13
+TCGA-CV-7253-01	RITA1	12	113187048	GRHL2	8	101543241	in-frame	4	11	SOMATIC	GRCh37	RITA1-GRHL2
+TCGA-CV-7253-01	PCNX2	1	233198939	TP73	1	3682333		2	3	SOMATIC	GRCh37	PCNX2-TP73
+TCGA-CV-7253-01	CSNK1G1	15	64300319	INTS2	17	61869988	frameshift	1	5	SOMATIC	GRCh37	CSNK1G1-INTS2
+TCGA-CV-7253-01	GRHL2	8	101492789	KCNRG	13	50020214	in-frame	1	2	SOMATIC	GRCh37	GRHL2-KCNRG
+TCGA-CV-7254-01	RAB3D	19	11337172	DMBT1	10	122635991	frameshift	1	9	SOMATIC	GRCh37	RAB3D-DMBT1
+TCGA-CV-7254-01	LAMA3	18	23810503	ADHFE1	8	66460308	in-frame	1	5	SOMATIC	GRCh37	LAMA3-ADHFE1
+TCGA-CV-7255-01	HIRA	22	19431440	BCL2L13	22	17726677	in-frame	16	29	SOMATIC	GRCh37	HIRA-BCL2L13
+TCGA-CV-7255-01	AAK1	2	69556860	GALNT14	2	31147110		2	9	SOMATIC	GRCh37	AAK1-GALNT14
+TCGA-CV-7255-01	CELSR2	1	109273892	SORT1	1	109312131		1000	1000	SOMATIC	GRCh37	CELSR2-SORT1
+TCGA-CV-7261-01	GOLIM4	3	168024526	SLC40A1	2	189575320	in-frame	18	58	SOMATIC	GRCh37	GOLIM4-SLC40A1
+TCGA-CV-7261-01	ARHGEF2	1	155978365	UBQLN4	1	156051857	in-frame	1	5	SOMATIC	GRCh37	ARHGEF2-UBQLN4
+TCGA-CV-7261-01	PCCA	13	100157340	FSIP2	2	185828156	frameshift	1	5	SOMATIC	GRCh37	PCCA-FSIP2
+TCGA-CV-7261-01	SHROOM3	4	76586469	COL8A1	3	99744897		1	2	SOMATIC	GRCh37	SHROOM3-COL8A1
+TCGA-CV-7263-01	C1orf21	1	184477603	LAMC1	1	183116577	frameshift	3	4	SOMATIC	GRCh37	C1orf21-LAMC1
+TCGA-CV-7406-01	FBXO28	1	224114396	LYZL2	10	30612900	frameshift	13	50	SOMATIC	GRCh37	FBXO28-LYZL2
+TCGA-CV-7406-01	PDE5A	4	119596523	C4orf3	4	119298779	frameshift	2	27	SOMATIC	GRCh37	PDE5A-C4orf3
+TCGA-CV-7407-01	PTPRD	9	8733780	IDO1	8	39913889		11	68	SOMATIC	GRCh37	PTPRD-IDO1
+TCGA-CV-7407-01	TSHZ3	19	31349180	IFNL1	19	39296805	frameshift	7	10	SOMATIC	GRCh37	TSHZ3-IFNL1
+TCGA-CV-7407-01	HACL1	3	15571668	METTL6	3	15384187	frameshift	2	22	SOMATIC	GRCh37	HACL1-METTL6
+TCGA-CV-7407-01	PPP1R21	2	48511468	GTF2A1L	2	48669722	in-frame	4	5	SOMATIC	GRCh37	PPP1R21-GTF2A1L
+TCGA-CV-7407-01	FNBP1	9	129957360	MFSD14CP	9	96918826		1	12	SOMATIC	GRCh37	FNBP1-MFSD14CP
+TCGA-CV-7407-01	CALD1	7	134843971	AKR1B15	7	134564598		1	7	SOMATIC	GRCh37	CALD1-AKR1B15
+TCGA-CV-7407-01	CDC42BPA	1	227080893	PRKG1	10	51153164	in-frame	1	6	SOMATIC	GRCh37	CDC42BPA-PRKG1
+TCGA-CV-7409-01	TRAK2	2	201420417	KCTD18	2	200507091		7	57	SOMATIC	GRCh37	TRAK2-KCTD18
+TCGA-CV-7410-01	LPP	3	188225527	CLSTN2	3	140532324		6	30	SOMATIC	GRCh37	LPP-CLSTN2
+TCGA-CV-7410-01	APP	21	26089943	TMEM50B	21	33468926		1	33	SOMATIC	GRCh37	APP-TMEM50B
+TCGA-CV-7413-01	KPNA4	3	160565214	IFT80	3	160384646		7	21	SOMATIC	GRCh37	KPNA4-IFT80
+TCGA-CV-7413-01	SUPT7L	2	27660984	RBKS	2	27781788	frameshift	4	9	SOMATIC	GRCh37	SUPT7L-RBKS
+TCGA-CV-7414-01	PIK3R3	1	46131847	ZSWIM5	1	45088237	in-frame	2	15	SOMATIC	GRCh37	PIK3R3-ZSWIM5
+TCGA-CV-7414-01	ITGA2	5	52989532	NDUFS4	5	53646233	in-frame	1	4	SOMATIC	GRCh37	ITGA2-NDUFS4
+TCGA-CV-7414-01	BICD2	9	92715253	ASPN	9	92466571	in-frame	1	3	SOMATIC	GRCh37	BICD2-ASPN
+TCGA-CV-7415-01	GLTSCR1	19	47673762	ZNF793	19	37548362		8	15	SOMATIC	GRCh37	GLTSCR1-ZNF793
+TCGA-CV-7415-01	SMARCA2	9	2088613	DMRT1	9	916763	in-frame	4	28	SOMATIC	GRCh37	SMARCA2-DMRT1
+TCGA-CV-7415-01	GTF2IRD1	7	74454176	HSPB1	7	76303802		2	1	SOMATIC	GRCh37	GTF2IRD1-HSPB1
+TCGA-CV-7416-01	TUBGCP3	13	112565111	TFDP1	13	113610996	in-frame	5	151	SOMATIC	GRCh37	TUBGCP3-TFDP1
+TCGA-CV-7416-01	CHST11	12	104457514	HCFC2	12	104066167	in-frame	2	4	SOMATIC	GRCh37	CHST11-HCFC2
+TCGA-CV-7416-01	RSPH3	6	158999712	MIF4GD	17	75268192	in-frame	1000	1000	SOMATIC	GRCh37	RSPH3-MIF4GD
+TCGA-CV-7418-01	LRP5	11	68312805	CLPB	11	72359008	in-frame	6	29	SOMATIC	GRCh37	LRP5-CLPB
+TCGA-CV-7418-01	NIPBL	5	36958231	SPEF2	5	35753624	frameshift	6	15	SOMATIC	GRCh37	NIPBL-SPEF2
+TCGA-CV-7418-01	FOXK2	17	82582934	FN3KRP	17	82726480	frameshift	4	19	SOMATIC	GRCh37	FOXK2-FN3KRP
+TCGA-CV-7418-01	PMS1	2	189873656	HIBCH	2	190246212	in-frame	2	4	SOMATIC	GRCh37	PMS1-HIBCH
+TCGA-CV-7421-01	EWSR1	22	29273864	ABR	17	1125367	in-frame	14	48	SOMATIC	GRCh37	EWSR1-ABR
+TCGA-CV-7421-01	VPS41	7	38789801	AES	19	3054194	frameshift	10	37	SOMATIC	GRCh37	VPS41-AES
+TCGA-CV-7421-01	PLAT	8	42207494	EFCAB8	20	32943636		5	15	SOMATIC	GRCh37	PLAT-EFCAB8
+TCGA-CV-7421-01	BCR	22	23182239	TOM1	22	35327271	frameshift	3	12	SOMATIC	GRCh37	BCR-TOM1
+TCGA-CV-7421-01	PLA2G6	22	38142050	SCARF2	22	20426020		4	7	SOMATIC	GRCh37	PLA2G6-SCARF2
+TCGA-CV-7421-01	TPX2	20	31760179	DUSP15	20	31850676	frameshift	2	14	SOMATIC	GRCh37	TPX2-DUSP15
+TCGA-CV-7422-01	TRABD	22	50185976	DDR2	1	162655211		5	17	SOMATIC	GRCh37	TRABD-DDR2
+TCGA-CV-7422-01	ARFIP1	4	152780226	DCTD	4	182915575		2	1	SOMATIC	GRCh37	ARFIP1-DCTD
+TCGA-CV-7422-01	ANKRD42	11	83198642	PICALM	11	85959060	in-frame	1	1	SOMATIC	GRCh37	ANKRD42-PICALM
+TCGA-CV-7424-01	DTNB	2	25451548	CNOT4	7	135422353	in-frame	6	16	SOMATIC	GRCh37	DTNB-CNOT4
+TCGA-CV-7424-01	AP2A2	11	926088	TRIM22	11	5697248	frameshift	4	7	SOMATIC	GRCh37	AP2A2-TRIM22
+TCGA-CV-7424-01	PPIL2	22	21683257	KIAA1671	22	25181699	in-frame	1	3	SOMATIC	GRCh37	PPIL2-KIAA1671
+TCGA-CV-7424-01	ANKIB1	7	92392292	GNAI1	7	80199225	in-frame	1	1	SOMATIC	GRCh37	ANKIB1-GNAI1
+TCGA-CV-7428-01	NFIX	19	13025552	RALGPS1	9	127166069	in-frame	7	26	SOMATIC	GRCh37	NFIX-RALGPS1
+TCGA-CV-7428-01	TMEM51	1	15153954	KAZN	1	15043989		7	15	SOMATIC	GRCh37	TMEM51-KAZN
+TCGA-CV-7428-01	SMU1	9	33068824	B4GALT1	9	33104781	in-frame	3	6	SOMATIC	GRCh37	SMU1-B4GALT1
+TCGA-CV-7429-01	GNA13	17	65053502	BMI1	10	22328134	frameshift	9	51	SOMATIC	GRCh37	GNA13-BMI1
+TCGA-CV-7430-01	ELP3	8	28158633	MYO5C	15	52208643	in-frame	9	33	SOMATIC	GRCh37	ELP3-MYO5C
+TCGA-CV-7430-01	IRAK2	3	10165048	SRGAP3	3	9124917	in-frame	8	36	SOMATIC	GRCh37	IRAK2-SRGAP3
+TCGA-CV-7430-01	PDLIM1	10	95263864	SORBS1	10	95322021	frameshift	2	6	SOMATIC	GRCh37	PDLIM1-SORBS1
+TCGA-CV-7433-01	LAMB3	1	209622536	NAMPT	7	106254504	frameshift	3	11	SOMATIC	GRCh37	LAMB3-NAMPT
+TCGA-CV-7433-01	MFF	2	227328789	COL4A3	2	227282365		4	6	SOMATIC	GRCh37	MFF-COL4A3
+TCGA-CV-7434-01	PQLC1	18	79943329	HSBP1L1	18	79966612	frameshift	28	210	SOMATIC	GRCh37	PQLC1-HSBP1L1
+TCGA-CV-7434-01	OPA1	3	193593409	ATP13A4	3	193459231	in-frame	8	24	SOMATIC	GRCh37	OPA1-ATP13A4
+TCGA-CV-7435-01	NEDD4L	18	58165861	UBE2G1	17	4307123	frameshift	8	68	SOMATIC	GRCh37	NEDD4L-UBE2G1
+TCGA-CV-7437-01	DPY19L1	7	35010468	SDK1	7	3821450	in-frame	3	21	SOMATIC	GRCh37	DPY19L1-SDK1
+TCGA-CV-7438-01	PPP1R12A	12	79934695	TPGS2	18	36818973	frameshift	1	2	SOMATIC	GRCh37	PPP1R12A-TPGS2
+TCGA-CV-7440-01	KMT2C	7	152205106	GTF2IRD1	7	74589851	in-frame	29	35	SOMATIC	GRCh37	KMT2C-GTF2IRD1
+TCGA-CV-7446-01	ARG2	14	67651346	IPPK	9	92652639		4	12	SOMATIC	GRCh37	ARG2-IPPK
+TCGA-CV-7446-01	NCOA2	8	70403700	EIF3E	8	108203503		1	1	SOMATIC	GRCh37	NCOA2-EIF3E
+TCGA-CV-7446-01	IPPK	9	92656456	VTI1B	14	67651481	in-frame	1000	1000	SOMATIC	GRCh37	IPPK-VTI1B
+TCGA-CV-7568-01	PGAP1	2	196870941	ZDBF2	2	206304717	frameshift	9	66	SOMATIC	GRCh37	PGAP1-ZDBF2
+TCGA-CV-A45P-01	EXOC2	6	488979	FRMD4B	3	69336586		1	28	SOMATIC	GRCh37	EXOC2-FRMD4B
+TCGA-CV-A45R-01	REV1	2	99489817	TMEM131	2	97776018		2	7	SOMATIC	GRCh37	REV1-TMEM131
+TCGA-CV-A45T-01	SEC23B	20	18525932	ZCCHC7	9	37349357	in-frame	8	26	SOMATIC	GRCh37	SEC23B-ZCCHC7
+TCGA-CV-A45T-01	DENND1A	9	123557570	ENG	9	127818832	in-frame	2	8	SOMATIC	GRCh37	DENND1A-ENG
+TCGA-CV-A45T-01	ZCCHC7	9	37327834	SEC23B	20	18542296	in-frame	1	6	SOMATIC	GRCh37	ZCCHC7-SEC23B
+TCGA-CV-A45U-01	C11orf68	11	65919042	DRAP1	11	65920019		21	32	SOMATIC	GRCh37	C11orf68-DRAP1
+TCGA-CV-A45W-01	C14orf2	14	103921470	BRF1	14	105252579		14	33	SOMATIC	GRCh37	C14orf2-BRF1
+TCGA-CV-A45X-01	VPS53	17	697418	ABR	17	1100735	in-frame	6	21	SOMATIC	GRCh37	VPS53-ABR
+TCGA-CV-A45X-01	PPFIA1	11	70272436	RBM4	11	66639700		6	20	SOMATIC	GRCh37	PPFIA1-RBM4
+TCGA-CV-A45X-01	KREMEN1	22	29073227	MAPK1	22	21769320	frameshift	2	4	SOMATIC	GRCh37	KREMEN1-MAPK1
+TCGA-CV-A45X-01	ADAM9	8	39091346	ERCC8	5	60928959	frameshift	1	2	SOMATIC	GRCh37	ADAM9-ERCC8
+TCGA-CV-A45Y-01	CAPS2	12	75371079	KCNC2	12	75051317		2	4	SOMATIC	GRCh37	CAPS2-KCNC2
+TCGA-CV-A461-01	MOB3A	19	2078140	DAND5	19	12973389	frameshift	6	13	SOMATIC	GRCh37	MOB3A-DAND5
+TCGA-CV-A464-01	ZNF462	9	106984409	RAD23B	9	107306379	in-frame	2	15	SOMATIC	GRCh37	ZNF462-RAD23B
+TCGA-CV-A465-01	ZNF267	16	31885256	GPR180	13	94621078	in-frame	5	36	SOMATIC	GRCh37	ZNF267-GPR180
+TCGA-CV-A465-01	MRPL30	2	99181249	FAM178B	2	96960440		8	2	SOMATIC	GRCh37	MRPL30-FAM178B
+TCGA-CV-A6JD-01	YWHAZ	8	100951929	UBA1	X	47198803		2	1	SOMATIC	GRCh37	YWHAZ-UBA1
+TCGA-CV-A6JE-01	HELZ	17	67151046	PSMD12	17	67341052	frameshift	8	69	SOMATIC	GRCh37	HELZ-PSMD12
+TCGA-CV-A6JN-01	CTTN	11	70422995	FHIT	3	60014075	in-frame	2	36	SOMATIC	GRCh37	CTTN-FHIT
+TCGA-CV-A6JU-01	IGSF3	1	116666284	C1orf137	1	116694759		15	48	SOMATIC	GRCh37	IGSF3-C1orf137
+TCGA-CX-7085-01	SPRR2G	1	153150014	SPRR2D	1	153040291	in-frame	1000	1000	SOMATIC	GRCh37	SPRR2G-SPRR2D
+TCGA-CX-7086-01	TBC1D10A	22	30299444	POLR3H	22	41540795	in-frame	8	20	SOMATIC	GRCh37	TBC1D10A-POLR3H
+TCGA-CX-7086-01	CBX7	22	39149789	VPREB1	22	22244946	frameshift	4	14	SOMATIC	GRCh37	CBX7-VPREB1
+TCGA-CX-7086-01	BCR	22	23182239	UPB1	22	24500107	frameshift	1	14	SOMATIC	GRCh37	BCR-UPB1
+TCGA-CX-7086-01	OSBP2	22	30870682	NF2	22	29642202	in-frame	1	12	SOMATIC	GRCh37	OSBP2-NF2
+TCGA-CX-7086-01	CRCT1	1	152516010	SPRR2A	1	153056653		1000	1000	SOMATIC	GRCh37	CRCT1-SPRR2A
+TCGA-CX-7219-01	EMP2	16	10532204	SORL1	11	121590488		24	0	SOMATIC	GRCh37	EMP2-SORL1
+TCGA-D6-6515-01	NDUFA7	19	8316496	PRKCG	19	53903073	frameshift	22	78	SOMATIC	GRCh37	NDUFA7-PRKCG
+TCGA-D6-6517-01	IFT20	17	28335340	VTN	17	28370270		12	123	SOMATIC	GRCh37	IFT20-VTN
+TCGA-D6-6517-01	DST	6	56458370	HMGN1	21	39349057		6	8	SOMATIC	GRCh37	DST-HMGN1
+TCGA-D6-6517-01	F3	1	94541537	C11orf80	11	66816053	in-frame	2	2	SOMATIC	GRCh37	F3-C11orf80
+TCGA-D6-6825-01	LAMB3	1	209622536	NAB1	2	190673101	frameshift	15	19	SOMATIC	GRCh37	LAMB3-NAB1
+TCGA-D6-6825-01	USP16	21	29030773	CNBD2	20	35972629	in-frame	4	27	SOMATIC	GRCh37	USP16-CNBD2
+TCGA-D6-6826-01	VGLL4	3	11601833	CHL1	3	377818	in-frame	11	102	SOMATIC	GRCh37	VGLL4-CHL1
+TCGA-D6-6826-01	RNF130	5	180013061	TBC1D9B	5	179904812	frameshift	1	5	SOMATIC	GRCh37	RNF130-TBC1D9B
+TCGA-D6-6826-01	SDK2	17	73365258	CDC42EP4	17	73286612		1000	1000	SOMATIC	GRCh37	SDK2-CDC42EP4
+TCGA-D6-6827-01	RB1	13	48307406	HTR2C	X	114906589	frameshift	5	28	SOMATIC	GRCh37	RB1-HTR2C
+TCGA-D6-6827-01	USPL1	13	30618056	RB1	13	48342599		4	5	SOMATIC	GRCh37	USPL1-RB1
+TCGA-D6-8568-01	NLRC5	16	57017188	CYB5B	16	69459093		15	62	SOMATIC	GRCh37	NLRC5-CYB5B
+TCGA-D6-8568-01	OTUB1	11	64001520	GBA1	1	155238650	frameshift	1	2	SOMATIC	GRCh37	OTUB1-GBA1
+TCGA-D6-8569-01	COL5A1	9	134772834	SPATA31D3	9	81946468	frameshift	9	22	SOMATIC	GRCh37	COL5A1-SPATA31D3
+TCGA-D6-8569-01	CAMSAP1	9	135907000	SDCCAG3	9	136407938	in-frame	2	23	SOMATIC	GRCh37	CAMSAP1-SDCCAG3
+TCGA-D6-8569-01	RXRA	9	134421805	PRRC2B	9	131430090		2	9	SOMATIC	GRCh37	RXRA-PRRC2B
+TCGA-D6-A4Z9-01	DYRK1A	21	37367628	IFNGR2	21	33421480		10	15	SOMATIC	GRCh37	DYRK1A-IFNGR2
+TCGA-D6-A4Z9-01	DIP2A	21	46509376	NRIP1	21	14968526		3	12	SOMATIC	GRCh37	DIP2A-NRIP1
+TCGA-D6-A4ZB-01	PRMT2	21	46649739	WRB	21	39390698	in-frame	3	8	SOMATIC	GRCh37	PRMT2-WRB
+TCGA-D6-A4ZB-01	C1S	12	7063067	PTPRO	12	15410280		2	5	SOMATIC	GRCh37	C1S-PTPRO
+TCGA-D6-A4ZB-01	SCAPER	15	76404524	TMEM266	15	76134168		2	5	SOMATIC	GRCh37	SCAPER-TMEM266
+TCGA-D6-A6EM-01	ITGB5	3	124901266	FGL1	8	17885571		1	6	SOMATIC	GRCh37	ITGB5-FGL1
+TCGA-D6-A6EN-01	MINK1	17	4833640	ALOX12	17	7000336	in-frame	6	25	SOMATIC	GRCh37	MINK1-ALOX12
+TCGA-D6-A6EO-01	FAM160A1	4	151409465	HPF1	4	169753835		6	32	SOMATIC	GRCh37	FAM160A1-HPF1
+TCGA-D6-A6ES-01	PSMC6	14	52711524	KANSL2	12	48655060	in-frame	3	1	SOMATIC	GRCh37	PSMC6-KANSL2
+TCGA-D6-A74Q-01	STIP1	11	64186270	UBE2G1	17	4307123	frameshift	16	45	SOMATIC	GRCh37	STIP1-UBE2G1
+TCGA-D6-A74Q-01	ANKRD12	18	9137873	RIOK3	18	23462964		1	3	SOMATIC	GRCh37	ANKRD12-RIOK3
+TCGA-DQ-5624-01	ERP44	9	100052417	CHRDL2	11	74718832	in-frame	53	246	SOMATIC	GRCh37	ERP44-CHRDL2
+TCGA-DQ-5624-01	SLC2A11	22	23875241	LLPH	12	66124018	in-frame	15	99	SOMATIC	GRCh37	SLC2A11-LLPH
+TCGA-DQ-5624-01	ALG10B	12	38318458	IGFBP6	12	53102045	in-frame	10	36	SOMATIC	GRCh37	ALG10B-IGFBP6
+TCGA-DQ-5624-01	ALG10	12	34024159	IGFBP6	12	53102045	in-frame	1000	1000	SOMATIC	GRCh37	ALG10-IGFBP6
+TCGA-DQ-5629-01	TMEM11	17	21214091	UBAP1	9	34220908	frameshift	2	27	SOMATIC	GRCh37	TMEM11-UBAP1
+TCGA-DQ-5629-01	PPP1R37	19	45093527	ZNF225	19	44115760		2	6	SOMATIC	GRCh37	PPP1R37-ZNF225
+TCGA-DQ-5630-01	DCLRE1C	10	14949036	OR7E26P	10	15000006		8	32	SOMATIC	GRCh37	DCLRE1C-OR7E26P
+TCGA-DQ-5630-01	SWAP70	11	9694286	WEE1	11	9581532	frameshift	2	10	SOMATIC	GRCh37	SWAP70-WEE1
+TCGA-DQ-5630-01	STN1	10	103882645	SH3PXD2A	10	103801362		1000	1000	SOMATIC	GRCh37	STN1-SH3PXD2A
+TCGA-DQ-5631-01	VSTM2L	20	37933589	RPRD1B	20	38089726	in-frame	4	24	SOMATIC	GRCh37	VSTM2L-RPRD1B
+TCGA-DQ-7588-01	FAT1	4	186633684	CFAP97	4	185164179	in-frame	15	653	SOMATIC	GRCh37	FAT1-CFAP97
+TCGA-DQ-7589-01	MED24	17	40026156	PPP1R1B	17	39635607	frameshift	9	163	SOMATIC	GRCh37	MED24-PPP1R1B
+TCGA-DQ-7589-01	DHX8	17	43484185	KRTAP4-1	17	41185321		4	40	SOMATIC	GRCh37	DHX8-KRTAP4-1
+TCGA-DQ-7589-01	CCND1	11	69643991	FGF4	11	69774127	in-frame	4	11	SOMATIC	GRCh37	CCND1-FGF4
+TCGA-DQ-7589-01	HAUS6	9	19094317	PMPCA	9	136412490	frameshift	5	7	SOMATIC	GRCh37	HAUS6-PMPCA
+TCGA-DQ-7589-01	ZDHHC21	9	14690337	ELAVL2	9	23731125		2	16	SOMATIC	GRCh37	ZDHHC21-ELAVL2
+TCGA-DQ-7589-01	CDK14	7	90604249	ORC5	7	104204234	in-frame	2	14	SOMATIC	GRCh37	CDK14-ORC5
+TCGA-DQ-7589-01	ATXN1	6	16522627	ZNF788	19	12135775		4	5	SOMATIC	GRCh37	ATXN1-ZNF788
+TCGA-DQ-7589-01	HACD3	15	65530718	RAB11A	15	65850864		3	4	SOMATIC	GRCh37	HACD3-RAB11A
+TCGA-DQ-7589-01	SNX30	9	112751157	CNTLN	9	17484295	in-frame	1	12	SOMATIC	GRCh37	SNX30-CNTLN
+TCGA-DQ-7589-01	PARG	10	49908455	FAM21EP	10	50021467		1	9	SOMATIC	GRCh37	PARG-FAM21EP
+TCGA-DQ-7589-01	TAF1A	1	222584128	SLC12A7	5	1085473	in-frame	1	3	SOMATIC	GRCh37	TAF1A-SLC12A7
+TCGA-DQ-7589-01	BCAS3	17	61078529	TLK2	17	62596585	in-frame	1	2	SOMATIC	GRCh37	BCAS3-TLK2
+TCGA-DQ-7590-01	PITX1	5	135033713	P4HA2	5	132218644	frameshift	10	27	SOMATIC	GRCh37	PITX1-P4HA2
+TCGA-DQ-7590-01	MKRN1	7	140459007	BRAF	7	140781693	in-frame	1	3	SOMATIC	GRCh37	MKRN1-BRAF
+TCGA-DQ-7591-01	KPNA6	1	32108134	RHCE	1	25370540	in-frame	54	74	SOMATIC	GRCh37	KPNA6-RHCE
+TCGA-DQ-7591-01	WDTC1	1	27234951	TMEM39B	1	32074951		6	52	SOMATIC	GRCh37	WDTC1-TMEM39B
+TCGA-DQ-7591-01	MAD1L1	7	2149152	SERGEF	11	17788413	frameshift	9	23	SOMATIC	GRCh37	MAD1L1-SERGEF
+TCGA-DQ-7591-01	PARD6G	18	80202710	CHST1	11	45652606		2	22	SOMATIC	GRCh37	PARD6G-CHST1
+TCGA-DQ-7591-01	KIF3B	20	32316874	NINL	20	25526598		4	7	SOMATIC	GRCh37	KIF3B-NINL
+TCGA-DQ-7591-01	CS	12	56291631	MUCL1	12	54858193		3	6	SOMATIC	GRCh37	CS-MUCL1
+TCGA-DQ-7591-01	GINS1	20	25407895	DEFB123	20	31450029	frameshift	1	14	SOMATIC	GRCh37	GINS1-DEFB123
+TCGA-DQ-7591-01	DNAJC8	1	28232921	KDF1	1	26952412		1	8	SOMATIC	GRCh37	DNAJC8-KDF1
+TCGA-DQ-7591-01	NAV1	1	201649425	HN1L	16	1691843	in-frame	1	7	SOMATIC	GRCh37	NAV1-HN1L
+TCGA-DQ-7591-01	PHB2	12	6970196	RBP5	12	7124730	frameshift	2	3	SOMATIC	GRCh37	PHB2-RBP5
+TCGA-DQ-7591-01	TASP1	20	13528446	AHCY	20	34295585	frameshift	1	7	SOMATIC	GRCh37	TASP1-AHCY
+TCGA-DQ-7591-01	SNRNP40	1	31289254	EPB41	1	29039254	frameshift	1	3	SOMATIC	GRCh37	SNRNP40-EPB41
+TCGA-DQ-7592-01	DHTKD1	10	12069187	CDC123	10	12230948	in-frame	13	65	SOMATIC	GRCh37	DHTKD1-CDC123
+TCGA-DQ-7592-01	FRS2	12	69470530	LEMD3	12	65210926		2	25	SOMATIC	GRCh37	FRS2-LEMD3
+TCGA-DQ-7592-01	SMO	7	129209397	STRIP2	7	129464612	in-frame	1	2	SOMATIC	GRCh37	SMO-STRIP2
+TCGA-DQ-7593-01	WDR11	10	120905416	PDLIM1	10	95271784	in-frame	4	22	SOMATIC	GRCh37	WDR11-PDLIM1
+TCGA-DQ-7594-01	ACACA	17	37406262	CCDC192	5	127797103	frameshift	11	45	SOMATIC	GRCh37	ACACA-CCDC192
+TCGA-DQ-7594-01	NFE2L2	2	177264532	RFTN2	2	197572280	in-frame	8	39	SOMATIC	GRCh37	NFE2L2-RFTN2
+TCGA-DQ-7594-01	AGPS	2	177513908	MOB4	2	197540111	in-frame	4	4	SOMATIC	GRCh37	AGPS-MOB4
+TCGA-DQ-7594-01	METTL8	2	171392043	RFTN2	2	197572280	frameshift	1	13	SOMATIC	GRCh37	METTL8-RFTN2
+TCGA-F7-7848-01	MRPL21	11	68892890	SHANK2	11	70473439	in-frame	43	166	SOMATIC	GRCh37	MRPL21-SHANK2
+TCGA-F7-7848-01	RPS6KB2	11	67429240	PCNX3	11	65617940	frameshift	11	99	SOMATIC	GRCh37	RPS6KB2-PCNX3
+TCGA-F7-7848-01	C11orf80	11	66759096	TSGA10IP	11	65945715	frameshift	4	20	SOMATIC	GRCh37	C11orf80-TSGA10IP
+TCGA-F7-7848-01	DYNLL1	12	120470104	COQ5	12	120510123		1	7	SOMATIC	GRCh37	DYNLL1-COQ5
+TCGA-F7-8298-01	METTL16	17	2473524	DHX8	17	43489449	in-frame	8	7	SOMATIC	GRCh37	METTL16-DHX8
+TCGA-F7-8298-01	HELZ	17	67239433	WIPF2	17	40256391		2	21	SOMATIC	GRCh37	HELZ-WIPF2
+TCGA-F7-8489-01	CASP1	11	105033064	TTC6	14	37802094		3	23	SOMATIC	GRCh37	CASP1-TTC6
+TCGA-F7-8489-01	ZFHX3	16	72889731	PMFBP1	16	72120089	frameshift	1	2	SOMATIC	GRCh37	ZFHX3-PMFBP1
+TCGA-F7-A50G-01	AEBP2	12	19493986	GYS2	12	21546470	frameshift	24	93	SOMATIC	GRCh37	AEBP2-GYS2
+TCGA-F7-A50I-01	CLSTN1	1	9773272	PIK3CD-AS2	1	9672719		4	66	SOMATIC	GRCh37	CLSTN1-PIK3CD-AS2
+TCGA-F7-A50I-01	CCDC47	17	63760914	USP37	2	218553724	in-frame	1	8	SOMATIC	GRCh37	CCDC47-USP37
+TCGA-F7-A50I-01	UTP6	17	31887236	BCAS3	17	61034666	frameshift	2	3	SOMATIC	GRCh37	UTP6-BCAS3
+TCGA-F7-A61V-01	KXD1	19	18565021	CRLF1	19	18573007		1	12	SOMATIC	GRCh37	KXD1-CRLF1
+TCGA-F7-A61W-01	C10orf76	10	102056085	LDB1	10	102111536		2	13	SOMATIC	GRCh37	C10orf76-LDB1
+TCGA-F7-A61W-01	AKR1A1	1	45561878	AGO3	1	36004341	frameshift	3	6	SOMATIC	GRCh37	AKR1A1-AGO3
+TCGA-F7-A620-01	F3	1	94541537	C11orf80	11	66816053	in-frame	1	1	SOMATIC	GRCh37	F3-C11orf80
+TCGA-F7-A623-01	PPIG	2	169614681	SSB	2	169805474	in-frame	5	27	SOMATIC	GRCh37	PPIG-SSB
+TCGA-F7-A623-01	SMAP1	6	70798737	KHDC1	6	73292040	frameshift	5	11	SOMATIC	GRCh37	SMAP1-KHDC1
+TCGA-F7-A623-01	FUT10	8	33473064	RNF122	8	33558771		5	8	SOMATIC	GRCh37	FUT10-RNF122
+TCGA-F7-A623-01	BECN1	17	42813948	GPATCH8	17	44438715		4	7	SOMATIC	GRCh37	BECN1-GPATCH8
+TCGA-F7-A623-01	KIF13B	8	29099133	SLC25A21	14	36875004	in-frame	1	14	SOMATIC	GRCh37	KIF13B-SLC25A21
+TCGA-F7-A623-01	TANC2	17	63099357	CEP112	17	65961598	frameshift	2	8	SOMATIC	GRCh37	TANC2-CEP112
+TCGA-F7-A623-01	VTI1A	10	112464657	ACSL5	10	112394918	frameshift	1	9	SOMATIC	GRCh37	VTI1A-ACSL5
+TCGA-H7-A6C4-01	UBAC2	13	99244624	CLYBL	13	99772824	in-frame	1	18	SOMATIC	GRCh37	UBAC2-CLYBL
+TCGA-H7-A6C4-01	WWC2	4	183099622	CCDC110	4	185471049	frameshift	2	7	SOMATIC	GRCh37	WWC2-CCDC110
+TCGA-H7-A76A-01	DENND1A	9	123609436	NDUFA8	9	122152408	in-frame	4	17	SOMATIC	GRCh37	DENND1A-NDUFA8
+TCGA-HD-7229-01	CHRM3	1	239827378	FMN2	1	240472372		4	16	SOMATIC	GRCh37	CHRM3-FMN2
+TCGA-HD-7229-01	PHF21A	11	46076754	MIR670HG	11	43569767		4	6	SOMATIC	GRCh37	PHF21A-MIR670HG
+TCGA-HD-7229-01	JAK2	9	5029906	GLDC	9	6565429	in-frame	1	2	SOMATIC	GRCh37	JAK2-GLDC
+TCGA-HD-7753-01	NSD2	4	1871542	PIBF1	13	72965274		65	239	SOMATIC	GRCh37	NSD2-PIBF1
+TCGA-HD-7753-01	PARD6G	18	80247277	RFTN2	2	197572280	in-frame	17	102	SOMATIC	GRCh37	PARD6G-RFTN2
+TCGA-HD-7753-01	LAMC2	1	183231103	WASHC3	12	102046119	in-frame	11	46	SOMATIC	GRCh37	LAMC2-WASHC3
+TCGA-HD-7753-01	FILIP1L	3	99876072	IMPG2	3	101269573		8	16	SOMATIC	GRCh37	FILIP1L-IMPG2
+TCGA-HD-7753-01	VRK1	14	96860735	SAMD4A	14	54702062	frameshift	1	3	SOMATIC	GRCh37	VRK1-SAMD4A
+TCGA-HD-7831-01	IGKV1OR2-6	2	97355327	IGKC	2	88857683		3	49	SOMATIC	GRCh37	IGKV1OR2-6-IGKC
+TCGA-HD-7831-01	FAM49B	8	129850835	CCDC26	8	129399684		3	17	SOMATIC	GRCh37	FAM49B-CCDC26
+TCGA-HD-7831-01	COL6A2	21	46122158	MYH9	22	36299042	in-frame	1	7	SOMATIC	GRCh37	COL6A2-MYH9
+TCGA-HD-7832-01	SEC24A	5	134692657	PCBD2	5	134959040	in-frame	1	3	SOMATIC	GRCh37	SEC24A-PCBD2
+TCGA-HD-8224-01	NSD2	4	1901251	PHTF2	7	77893608	in-frame	7	49	SOMATIC	GRCh37	NSD2-PHTF2
+TCGA-HD-8224-01	C15orf41	15	36579961	RYR3	15	33722715	frameshift	1	4	SOMATIC	GRCh37	C15orf41-RYR3
+TCGA-HD-8314-01	NIPAL3	1	24453504	GRHL3	1	24364185	frameshift	31	64	SOMATIC	GRCh37	NIPAL3-GRHL3
+TCGA-HD-8314-01	BPIFB2	20	33020587	MUC5B	11	1260626	frameshift	1	3	SOMATIC	GRCh37	BPIFB2-MUC5B
+TCGA-HD-A634-01	GPD2	2	156476207	NR4A2	2	156326000	frameshift	23	161	SOMATIC	GRCh37	GPD2-NR4A2
+TCGA-HD-A634-01	NR4A2	2	156330668	GPD2	2	156476098		4	30	SOMATIC	GRCh37	NR4A2-GPD2
+TCGA-HD-A6HZ-01	PLPP1	5	55534572	SPEF2	5	35806707	frameshift	8	25	SOMATIC	GRCh37	PLPP1-SPEF2
+TCGA-HD-A6HZ-01	ACTR3	2	113955706	SLC4A10	2	161620915		5	15	SOMATIC	GRCh37	ACTR3-SLC4A10
+TCGA-HD-A6HZ-01	PTPRF	1	43623403	LRP12	8	104509074		4	10	SOMATIC	GRCh37	PTPRF-LRP12
+TCGA-HD-A6HZ-01	GPR161	1	168136257	MPC2	1	167920631	frameshift	1	5	SOMATIC	GRCh37	GPR161-MPC2
+TCGA-HD-A6HZ-01	CACNA2D1	7	81982567	CDK14	7	91045897	frameshift	1	2	SOMATIC	GRCh37	CACNA2D1-CDK14
+TCGA-HD-A6I0-01	ARHGEF37	5	149581624	MIR205HG	1	209429181		1	1	SOMATIC	GRCh37	ARHGEF37-MIR205HG
+TCGA-HL-7533-01	TBL1X	X	9501849	GPR143	X	9743673		15	69	SOMATIC	GRCh37	TBL1X-GPR143
+TCGA-HL-7533-01	NF1	17	31169997	RNF135	17	30997242	in-frame	7	24	SOMATIC	GRCh37	NF1-RNF135
+TCGA-HL-7533-01	IQGAP1	15	90390873	SPPL2A	15	50707874	frameshift	8	7	SOMATIC	GRCh37	IQGAP1-SPPL2A
+TCGA-IQ-7630-01	PSAP	10	71851182	ASCC1	10	72213331		1	12	SOMATIC	GRCh37	PSAP-ASCC1
+TCGA-IQ-7631-01	LRP5	11	68312805	ZNF317	19	9155925		2	11	SOMATIC	GRCh37	LRP5-ZNF317
+TCGA-IQ-7632-01	PWP2	21	44124727	TRAPPC10	21	44074324	in-frame	3	5	SOMATIC	GRCh37	PWP2-TRAPPC10
+TCGA-IQ-A61G-01	ASNSD1	2	189661610	PMS1	2	189843964	in-frame	6	32	SOMATIC	GRCh37	ASNSD1-PMS1
+TCGA-IQ-A61G-01	EML3	11	62605113	INTS5	11	62649999	in-frame	2	6	SOMATIC	GRCh37	EML3-INTS5
+TCGA-IQ-A61H-01	GRHL2	8	101492789	CRMP1	4	5828668	frameshift	74	210	SOMATIC	GRCh37	GRHL2-CRMP1
+TCGA-IQ-A61H-01	GRHL2	8	101649499	SPAG1	8	100162279		1	17	SOMATIC	GRCh37	GRHL2-SPAG1
+TCGA-IQ-A61H-01	FCHSD2	11	73083695	STARD10	11	72793924		3	5	SOMATIC	GRCh37	FCHSD2-STARD10
+TCGA-IQ-A61H-01	ATP6V1C1	8	103042407	VPS13B	8	99556450	in-frame	1	3	SOMATIC	GRCh37	ATP6V1C1-VPS13B
+TCGA-IQ-A61I-01	CXCL1	4	73869989	AFP	4	73453765	in-frame	2	14	SOMATIC	GRCh37	CXCL1-AFP
+TCGA-IQ-A61I-01	FANCC	9	95135346	ACOT11	1	54584655	in-frame	1	8	SOMATIC	GRCh37	FANCC-ACOT11
+TCGA-KU-A66T-01	KDM5C	X	53216074	HUWE1	X	53680186		44	200	SOMATIC	GRCh37	KDM5C-HUWE1
+TCGA-KU-A66T-01	NSD3	8	38304587	TCEA1	8	53970463	frameshift	22	223	SOMATIC	GRCh37	NSD3-TCEA1
+TCGA-KU-A66T-01	MYO1B	2	191245626	NCKAP1	2	182964808		5	17	SOMATIC	GRCh37	MYO1B-NCKAP1
+TCGA-KU-A66T-01	CHM	X	85873052	KCNIP4	4	20850667	frameshift	1	4	SOMATIC	GRCh37	CHM-KCNIP4
+TCGA-KU-A66T-01	FAM171B	2	186694411	ZNF75D	X	135252011		1	2	SOMATIC	GRCh37	FAM171B-ZNF75D
+TCGA-KU-A6H7-01	CPSF6	12	69262562	COL16A1	1	31652853	frameshift	70	296	SOMATIC	GRCh37	CPSF6-COL16A1
+TCGA-KU-A6H7-01	COL16A1	1	31653599	CPSF6	12	69269512	frameshift	20	120	SOMATIC	GRCh37	COL16A1-CPSF6
+TCGA-KU-A6H7-01	HSPA8	11	123060593	VSTM5	11	93821323	frameshift	1	28	SOMATIC	GRCh37	HSPA8-VSTM5
+TCGA-MT-A51X-01	UNC13B	9	35231219	UBE2R2	9	33886881	frameshift	7	31	SOMATIC	GRCh37	UNC13B-UBE2R2
+TCGA-MT-A51X-01	GTF2IRD1	7	74454176	SEM1	7	96637306		4	5	SOMATIC	GRCh37	GTF2IRD1-SEM1
+TCGA-MT-A67A-01	CCAR2	8	22608065	PPP3CC	8	22540615	frameshift	2	2	SOMATIC	GRCh37	CCAR2-PPP3CC
+TCGA-MT-A67F-01	RBM17	10	6106238	PRKACB	1	84179177	in-frame	9	48	SOMATIC	GRCh37	RBM17-PRKACB
+TCGA-MT-A7BN-01	NT5DC1	6	116115770	SEC63	6	107883146	in-frame	5	20	SOMATIC	GRCh37	NT5DC1-SEC63
+TCGA-MT-A7BN-01	PREP	6	105281746	PTPRK	6	128322310	frameshift	1	9	SOMATIC	GRCh37	PREP-PTPRK
+TCGA-MT-A7BN-01	BPGM	7	134646937	AKR1B15	7	134568158		1	2	SOMATIC	GRCh37	BPGM-AKR1B15
+TCGA-MT-A7BN-01	ZNF529	19	36572333	FAM187B	19	35225212	in-frame	1	2	SOMATIC	GRCh37	ZNF529-FAM187B
+TCGA-MZ-A5BI-01	ZFPM2	8	105634357	ANXA13	8	123681359	frameshift	28	69	SOMATIC	GRCh37	ZFPM2-ANXA13
+TCGA-MZ-A5BI-01	NFE2L3	7	26183784	TPST1	7	66352505	in-frame	3	25	SOMATIC	GRCh37	NFE2L3-TPST1
+TCGA-MZ-A5BI-01	UBR5	8	102257632	TRAF3	14	102886189	in-frame	3	5	SOMATIC	GRCh37	UBR5-TRAF3
+TCGA-MZ-A5BI-01	SUZ12	17	31988497	LRRC37B	17	32053266	frameshift	1000	1000	SOMATIC	GRCh37	SUZ12-LRRC37B
+TCGA-MZ-A6I9-01	HSD17B12	11	43840064	RPS6KB1	17	59910562	in-frame	1	2	SOMATIC	GRCh37	HSD17B12-RPS6KB1
+TCGA-MZ-A7D7-01	TOP1	20	41029455	CA10	17	51747818	frameshift	12	11	SOMATIC	GRCh37	TOP1-CA10
+TCGA-MZ-A7D7-01	JARID2	6	15452175	HFE	6	26091314	in-frame	1	11	SOMATIC	GRCh37	JARID2-HFE
+TCGA-MZ-A7D7-01	UVRAG	11	75912039	DPP3	11	66492716	frameshift	1	3	SOMATIC	GRCh37	UVRAG-DPP3
+TCGA-P3-A5Q6-01	NELL2	12	44607169	MUC19	12	40397879		2	5	SOMATIC	GRCh37	NELL2-MUC19
+TCGA-P3-A5Q6-01	KMT2A	11	118436944	ATP5L	11	118431024	in-frame	1	1	SOMATIC	GRCh37	KMT2A-ATP5L
+TCGA-P3-A5QA-01	MYH9	22	36282713	RBFOX2	22	35746561	in-frame	30	48	SOMATIC	GRCh37	MYH9-RBFOX2
+TCGA-P3-A5QA-01	FAM160A1	4	151482648	MYO18B	22	25868320		1	6	SOMATIC	GRCh37	FAM160A1-MYO18B
+TCGA-P3-A5QE-01	SPAG7	17	4967720	DNAH17	17	78475833	frameshift	1	17	SOMATIC	GRCh37	SPAG7-DNAH17
+TCGA-P3-A5QF-01	CPSF1	8	144399588	VPS28	8	144423922	in-frame	8	20	SOMATIC	GRCh37	CPSF1-VPS28
+TCGA-P3-A6SW-01	ZBTB49	4	4290353	IGKJ5	2	88860603		13	0	SOMATIC	GRCh37	ZBTB49-IGKJ5
+TCGA-P3-A6SW-01	MIDN	19	1255694	HMGB2P1	19	1203272		3	4	SOMATIC	GRCh37	MIDN-HMGB2P1
+TCGA-P3-A6SX-01	RPS10	6	34424669	ITPR3	6	33655766	in-frame	2	10	SOMATIC	GRCh37	RPS10-ITPR3
+TCGA-P3-A6SX-01	SAMD9	7	93114795	VPS50	7	93239866		2	6	SOMATIC	GRCh37	SAMD9-VPS50
+TCGA-P3-A6T0-01	UBE2L3	22	21611043	BID	22	17739488	in-frame	1	11	SOMATIC	GRCh37	UBE2L3-BID
+TCGA-P3-A6T3-01	NRP2	2	205697721	PARD3B	2	205615456	in-frame	2	7	SOMATIC	GRCh37	NRP2-PARD3B
+TCGA-P3-A6T5-01	PRSS23	11	86823593	LGALS12	11	63510463	frameshift	7	26	SOMATIC	GRCh37	PRSS23-LGALS12
+TCGA-P3-A6T5-01	APLP2	11	130070082	SLC22A10	11	63362380		4	2	SOMATIC	GRCh37	APLP2-SLC22A10
+TCGA-P3-A6T7-01	CRYBG3	3	97900485	MYBPC1	12	101614496	frameshift	4	4	SOMATIC	GRCh37	CRYBG3-MYBPC1
+TCGA-P3-A6T7-01	P4HB	17	81859181	CENPX	17	82019219	in-frame	1	4	SOMATIC	GRCh37	P4HB-CENPX
+TCGA-P3-A6T7-01	RGMA	15	93072916	GLYATL1P3	11	59093934	in-frame	1	2	SOMATIC	GRCh37	RGMA-GLYATL1P3
+TCGA-P3-A6T8-01	TMPRSS2	21	41471806	HSF2BP	21	43529962	in-frame	22	47	SOMATIC	GRCh37	TMPRSS2-HSF2BP
+TCGA-P3-A6T8-01	SLC35G2	3	136819214	IL20RB	3	136980466		8	43	SOMATIC	GRCh37	SLC35G2-IL20RB
+TCGA-P3-A6T8-01	EIF3A	10	119049801	TBC1D1	4	38089932	frameshift	7	6	SOMATIC	GRCh37	EIF3A-TBC1D1
+TCGA-P3-A6T8-01	AGO1	1	35902337	SLC25A3P1	1	53415524		3	8	SOMATIC	GRCh37	AGO1-SLC25A3P1
+TCGA-P3-A6T8-01	WNK1	12	754324	KDM4B	19	5016257		1	7	SOMATIC	GRCh37	WNK1-KDM4B
+TCGA-QK-A64Z-01	TRA2B	3	185937825	HRH4	18	24468788	frameshift	6	27	SOMATIC	GRCh37	TRA2B-HRH4
+TCGA-QK-A64Z-01	TMEM241	18	23384990	RIOK3	18	23466133	in-frame	5	12	SOMATIC	GRCh37	TMEM241-RIOK3
+TCGA-QK-A64Z-01	YEATS2	3	183762279	HTR3C	3	184055312	in-frame	5	8	SOMATIC	GRCh37	YEATS2-HTR3C
+TCGA-QK-A652-01	LENG1	19	54158282	NIT2	3	100341073	frameshift	8	25	SOMATIC	GRCh37	LENG1-NIT2
+TCGA-QK-A6IG-01	STK39	2	168247228	PARVA	11	12473745	in-frame	2	5	SOMATIC	GRCh37	STK39-PARVA
+TCGA-QK-A6IG-01	PRR12	19	49601918	SNRNP70	19	49101390	in-frame	1	3	SOMATIC	GRCh37	PRR12-SNRNP70
+TCGA-QK-A6IH-01	DENND5B	12	31495810	TSPAN9	12	3083653		1	1	SOMATIC	GRCh37	DENND5B-TSPAN9
+TCGA-QK-A6IJ-01	RALY	20	33994131	PXMP4	20	33714736		9	21	SOMATIC	GRCh37	RALY-PXMP4
+TCGA-QK-A6V9-01	PLSCR1	3	146517006	MACROD2	20	16041201	frameshift	7	18	SOMATIC	GRCh37	PLSCR1-MACROD2
+TCGA-QK-A6VB-01	DDB1	11	61323979	STX3	11	59773211	in-frame	25	79	SOMATIC	GRCh37	DDB1-STX3
+TCGA-QK-A6VC-01	PBRM1	3	52678500	GLT8D1	3	52700496		10	16	SOMATIC	GRCh37	PBRM1-GLT8D1
+TCGA-QK-A6VC-01	NFE2L1	17	48056598	COPZ2	17	48033944	in-frame	1	7	SOMATIC	GRCh37	NFE2L1-COPZ2
+TCGA-QK-A8Z7-01	JUP	17	41758715	NT5C3B	17	41825657	in-frame	5	82	SOMATIC	GRCh37	JUP-NT5C3B
+TCGA-QK-A8Z7-01	NMRAL2P	3	185968717	FBXL6	8	144357121		4	17	SOMATIC	GRCh37	NMRAL2P-FBXL6
+TCGA-QK-A8Z7-01	FOXA3	19	45864525	RGS6	14	72454528	frameshift	4	5	SOMATIC	GRCh37	FOXA3-RGS6
+TCGA-QK-A8Z8-01	TMEM165	4	55424643	KIAA1211	4	56272321		19	45	SOMATIC	GRCh37	TMEM165-KIAA1211
+TCGA-QK-A8Z8-01	RAB28	4	13460699	STAP1	4	67590884	frameshift	1	9	SOMATIC	GRCh37	RAB28-STAP1
+TCGA-QK-A8Z9-01	SP140L	2	230392229	PDE6D	2	231739202		10	33	SOMATIC	GRCh37	SP140L-PDE6D
+TCGA-QK-A8Z9-01	AMOTL1	11	94729055	CEP295	11	93721312	in-frame	6	27	SOMATIC	GRCh37	AMOTL1-CEP295
+TCGA-QK-A8Z9-01	HADHA	2	26230192	PRKAR1B	7	596304	frameshift	2	1	SOMATIC	GRCh37	HADHA-PRKAR1B
+TCGA-QK-A8Z9-01	TENM3	4	182449083	NR3C2	4	148194862	in-frame	1	2	SOMATIC	GRCh37	TENM3-NR3C2
+TCGA-QK-A8ZA-01	ESYT2	7	158797942	ZNF595	4	59430	in-frame	9	23	SOMATIC	GRCh37	ESYT2-ZNF595
+TCGA-QK-A8ZA-01	ATP11A	13	112690455	NAXD	13	110622216	frameshift	8	18	SOMATIC	GRCh37	ATP11A-NAXD
+TCGA-QK-A8ZA-01	PRRC2B	9	131394263	UHRF2	9	6504593		4	12	SOMATIC	GRCh37	PRRC2B-UHRF2
+TCGA-QK-A8ZA-01	BTBD9	6	38577600	PLEKHB1	11	73660753	in-frame	1	9	SOMATIC	GRCh37	BTBD9-PLEKHB1
+TCGA-QK-A8ZA-01	ZCCHC14	16	87460008	C16orf95	16	87141103		1	5	SOMATIC	GRCh37	ZCCHC14-C16orf95
+TCGA-QK-A8ZB-01	HEBP1	12	12987152	NCK1	3	136948259	frameshift	35	189	SOMATIC	GRCh37	HEBP1-NCK1
+TCGA-QK-A8ZB-01	NCK1	3	136946295	HEBP1	12	12975479	frameshift	44	96	SOMATIC	GRCh37	NCK1-HEBP1
+TCGA-QK-A8ZB-01	IL20RB	3	136946295	HEBP1	12	12975479		44	54	SOMATIC	GRCh37	IL20RB-HEBP1
+TCGA-QK-A8ZB-01	PDIA6	2	10812678	DKK3	11	11968487	frameshift	23	48	SOMATIC	GRCh37	PDIA6-DKK3
+TCGA-QK-A8ZB-01	BRWD3	X	80791854	NALF1	13	107170786	in-frame	6	39	SOMATIC	GRCh37	BRWD3-NALF1
+TCGA-QK-A8ZB-01	MAP4K3	2	39378066	EML4	2	42280850	in-frame	2	4	SOMATIC	GRCh37	MAP4K3-EML4
+TCGA-QK-A8ZB-01	LPIN1	2	11820514	TIMM17A	1	201957511	frameshift	1	4	SOMATIC	GRCh37	LPIN1-TIMM17A
+TCGA-RS-A6TO-01	NEAT1	11	65424014	CNIH2	11	66283035		85	152	SOMATIC	GRCh37	NEAT1-CNIH2
+TCGA-RS-A6TO-01	NEAT1_3	11	65424014	CNIH2	11	66283035		85	98	SOMATIC	GRCh37	NEAT1_3-CNIH2
+TCGA-RS-A6TO-01	IPPK	9	92669908	IARS	9	92256800	in-frame	2	19	SOMATIC	GRCh37	IPPK-IARS
+TCGA-RS-A6TO-01	LRFN3	19	35935782	GMFG	19	39333126		2	2	SOMATIC	GRCh37	LRFN3-GMFG
+TCGA-RS-A6TO-01	GLS	2	190902026	MYO1B	2	191276887		1	5	SOMATIC	GRCh37	GLS-MYO1B
+TCGA-RS-A6TO-01	MYO9B	19	17102557	SPC24	19	11146430	in-frame	1	2	SOMATIC	GRCh37	MYO9B-SPC24
+TCGA-RS-A6TP-01	RCBTB2	13	48510629	EPSTI1	13	42926429	in-frame	17	58	SOMATIC	GRCh37	RCBTB2-EPSTI1
+TCGA-RS-A6TP-01	MAP2K4	17	12021001	PSMD12	17	67357578	in-frame	8	15	SOMATIC	GRCh37	MAP2K4-PSMD12
+TCGA-RS-A6TP-01	TRPC4AP	20	35078046	SOGA1	20	36804902	in-frame	6	15	SOMATIC	GRCh37	TRPC4AP-SOGA1
+TCGA-RS-A6TP-01	KIF3B	20	32316874	PXMP4	20	33714736	in-frame	3	2	SOMATIC	GRCh37	KIF3B-PXMP4
+TCGA-RS-A6TP-01	NINL	20	25489244	TTLL9	20	31937396	in-frame	1	8	SOMATIC	GRCh37	NINL-TTLL9
+TCGA-T2-A6WZ-01	USP9X	X	41219231	BLVRB	19	40458545	in-frame	21	106	SOMATIC	GRCh37	USP9X-BLVRB
+TCGA-T2-A6WZ-01	MACROD1	11	64151239	BAD	11	64284376		5	15	SOMATIC	GRCh37	MACROD1-BAD
+TCGA-T2-A6X0-01	CCDC88C	14	91305765	RASGEF1B	4	81915358	in-frame	19	97	SOMATIC	GRCh37	CCDC88C-RASGEF1B
+TCGA-T2-A6X0-01	BCL2L13	22	17655832	CUX2	12	111334441	in-frame	6	17	SOMATIC	GRCh37	BCL2L13-CUX2
+TCGA-T2-A6X0-01	DAPP1	4	99863072	COL4A3	2	227311786	frameshift	4	7	SOMATIC	GRCh37	DAPP1-COL4A3
+TCGA-T2-A6X0-01	COPS8	2	237099038	RIN3	14	92684987		4	1	SOMATIC	GRCh37	COPS8-RIN3
+TCGA-T2-A6X0-01	UFSP2	4	185425866	EPHA4	2	221501172	frameshift	3	5	SOMATIC	GRCh37	UFSP2-EPHA4
+TCGA-T2-A6X0-01	PEX14	1	10623116	CASZ1	1	10796650		1000	1000	SOMATIC	GRCh37	PEX14-CASZ1
+TCGA-T3-A92M-01	ZMAT5	22	29766872	NIPSNAP1	22	29561862		5	11	SOMATIC	GRCh37	ZMAT5-NIPSNAP1
+TCGA-T3-A92M-01	FHOD3	18	36298000	MOCOS	18	36256968	frameshift	4	8	SOMATIC	GRCh37	FHOD3-MOCOS
+TCGA-T3-A92M-01	OSBPL1A	18	24239220	MYO16	13	109120370	frameshift	3	12	SOMATIC	GRCh37	OSBPL1A-MYO16
+TCGA-T3-A92M-01	CCDC142	2	74481223	M1AP	2	74581847	in-frame	2	5	SOMATIC	GRCh37	CCDC142-M1AP
+TCGA-T3-A92M-01	NCS1	9	130223159	TOR1B	9	129804073	frameshift	2	4	SOMATIC	GRCh37	NCS1-TOR1B
+TCGA-T3-A92N-01	BCL2L13	22	17696210	VPS8	3	184898565	in-frame	4	11	SOMATIC	GRCh37	BCL2L13-VPS8
+TCGA-TN-A7HJ-01	B4GALT1	9	33120419	HSPC324	9	136649065		7	16	SOMATIC	GRCh37	B4GALT1-HSPC324
+TCGA-TN-A7HJ-01	GNRHR2	1	145919900	S100A13	1	153619038		4	11	SOMATIC	GRCh37	GNRHR2-S100A13
+TCGA-TN-A7HJ-01	DNAAF5	7	770618	SMYD3	1	245929937	frameshift	2	1	SOMATIC	GRCh37	DNAAF5-SMYD3
+TCGA-TN-A7HJ-01	SENP5	3	196930900	KCNMB3	3	179244693	frameshift	1	5	SOMATIC	GRCh37	SENP5-KCNMB3
+TCGA-UF-A719-01	TULP4	6	158498812	FNDC1	6	159214945	in-frame	8	29	SOMATIC	GRCh37	TULP4-FNDC1
+TCGA-UF-A71A-01	RABEP1	17	5332152	RNF167	17	4940487		6	28	SOMATIC	GRCh37	RABEP1-RNF167
+TCGA-UF-A71A-01	TTK	6	80014586	BCKDHB	6	80200934	in-frame	8	16	SOMATIC	GRCh37	TTK-BCKDHB
+TCGA-UF-A71B-01	TMEM241	18	23309680	PACS1	11	66193486	in-frame	1	5	SOMATIC	GRCh37	TMEM241-PACS1
+TCGA-UF-A71E-01	EPC1	10	32305772	QPCT	2	37359580	frameshift	8	10	SOMATIC	GRCh37	EPC1-QPCT
+TCGA-UF-A7J9-01	RASSF8	12	26068923	BMAL2	12	27400534		5	10	SOMATIC	GRCh37	RASSF8-BMAL2
+TCGA-UF-A7J9-01	ERC1	12	1408247	HEBP1	12	12989415	in-frame	1	17	SOMATIC	GRCh37	ERC1-HEBP1
+TCGA-UF-A7JA-01	STAG1	3	136398749	SPSB4	3	141147142	frameshift	4	7	SOMATIC	GRCh37	STAG1-SPSB4
+TCGA-UF-A7JA-01	TRAPPC11	4	183679486	ING2	4	183510282	frameshift	3	3	SOMATIC	GRCh37	TRAPPC11-ING2
+TCGA-UF-A7JA-01	PRKCD	3	53190001	SLC4A8	12	51489700	in-frame	2	5	SOMATIC	GRCh37	PRKCD-SLC4A8
+TCGA-UF-A7JD-01	SNHG6	8	66925437	PPP1R42	8	67010831		13	39	SOMATIC	GRCh37	SNHG6-PPP1R42
+TCGA-UF-A7JD-01	POGZ	1	151423397	SLC6A13	12	243813	in-frame	4	13	SOMATIC	GRCh37	POGZ-SLC6A13
+TCGA-UF-A7JD-01	SLFN5	17	35243143	CDK5RAP3	17	47973519		3	15	SOMATIC	GRCh37	SLFN5-CDK5RAP3
+TCGA-UF-A7JD-01	SMIM15	5	61161088	ELOVL7	5	60799230		2	11	SOMATIC	GRCh37	SMIM15-ELOVL7
+TCGA-UF-A7JH-01	LEMD3	12	65171118	TSPAN8	12	71282819		1	11	SOMATIC	GRCh37	LEMD3-TSPAN8
+TCGA-UF-A7JJ-01	AEBP2	12	19473355	PIK3C2G	12	18609535	frameshift	6	2	SOMATIC	GRCh37	AEBP2-PIK3C2G
+TCGA-UF-A7JJ-01	PARP4	13	24512706	COL9A1	6	70283820		1	15	SOMATIC	GRCh37	PARP4-COL9A1
+TCGA-UF-A7JK-01	POMK	8	43103830	ANK1	8	41734069	in-frame	9	26	SOMATIC	GRCh37	POMK-ANK1
+TCGA-UF-A7JK-01	MAP4	3	47914817	ULK2	17	19777716	frameshift	1	11	SOMATIC	GRCh37	MAP4-ULK2
+TCGA-UF-A7JV-01	YAP1	11	102162571	SHANK2	11	70502931	frameshift	3	4	SOMATIC	GRCh37	YAP1-SHANK2
+TCGA-UF-A7JV-01	PACS1	11	66193573	FOLH1	11	49158043	in-frame	2	7	SOMATIC	GRCh37	PACS1-FOLH1
+TCGA-UF-A7JV-01	UVRAG	11	75815524	RRAS2	11	14295855	in-frame	3	1	SOMATIC	GRCh37	UVRAG-RRAS2
+TCGA-UF-A7JV-01	CTSC	11	88334937	MMP12	11	102873112	in-frame	1	7	SOMATIC	GRCh37	CTSC-MMP12
+TCGA-UF-A7JV-01	LAMTOR1	11	72098289	UVRAG	11	75851883	in-frame	1	4	SOMATIC	GRCh37	LAMTOR1-UVRAG
+TCGA-UP-A6WW-01	CYLD	16	50782466	UNGP1	16	51278781		13	17	SOMATIC	GRCh37	CYLD-UNGP1
+TCGA-UP-A6WW-01	TSPAN5	4	98658146	MAPK10	4	86017375	in-frame	3	20	SOMATIC	GRCh37	TSPAN5-MAPK10
+TCGA-UP-A6WW-01	C9orf3	9	94956015	CUEDC1	17	57885879		1	5	SOMATIC	GRCh37	C9orf3-CUEDC1

data_timeline_sample_acquisition.txt

@@ -0,0 +1,520 @@
+PATIENT_ID	START_DATE	STOP_DATE	EVENT_TYPE	SAMPLE_ID	COUNTRY	SAMPLE_PRESCREENED	SUBMITTED_FOR_LCE	TOP_SLIDE_SUBMITTED	TUMOR_NECROSIS_PERCENT	TUMOR_NUCLEI_PERCENT	TUMOR_WEIGHT	VESSEL_USED
+TCGA-4P-AA8J	1		Sample Acquisition	TCGA-4P-AA8J-01	United States	Yes	No	Yes	10	80	100	Cryosette
+TCGA-BA-4074	6		Sample Acquisition	TCGA-BA-4074-01		Yes		Yes	0	70	210	Cassette
+TCGA-BA-4076	0		Sample Acquisition	TCGA-BA-4076-01		Yes		Yes	0	70	120	Cassette
+TCGA-BA-4078	0		Sample Acquisition	TCGA-BA-4078-01		Yes		Yes	0	70	380	Cassette
+TCGA-BA-5149	25		Sample Acquisition	TCGA-BA-5149-01		Yes		No	30	70	235	Cryovial
+TCGA-BA-5151	0		Sample Acquisition	TCGA-BA-5151-01		Yes		No	30	70	173	Cryovial
+TCGA-BA-5152	79		Sample Acquisition	TCGA-BA-5152-01		Yes		No	0	70	135	Cryovial
+TCGA-BA-5153	0		Sample Acquisition	TCGA-BA-5153-01		Yes		No	5	90	88	Cryovial
+TCGA-BA-5555	38		Sample Acquisition	TCGA-BA-5555-01		Yes		No	30	70	167	Cryovial
+TCGA-BA-5556	32		Sample Acquisition	TCGA-BA-5556-01		Yes		No	0	70	168	Cryovial
+TCGA-BA-5557	26		Sample Acquisition	TCGA-BA-5557-01		Yes		No	0	70	97	Cryovial
+TCGA-BA-5558	43		Sample Acquisition	TCGA-BA-5558-01		Yes		No	30	70	99	Cryovial
+TCGA-BA-5559	40		Sample Acquisition	TCGA-BA-5559-01		Yes		No	0	70	125	Cryovial
+TCGA-BA-6869	47		Sample Acquisition	TCGA-BA-6869-01	United States	Yes		Yes	0	70	230	Cryovial
+TCGA-BA-6870	0		Sample Acquisition	TCGA-BA-6870-01	United States	Yes		No	25	60	105	Cryovial
+TCGA-BA-6871	5		Sample Acquisition	TCGA-BA-6871-01	United States	Yes		No	10	60	425	Cryovial
+TCGA-BA-6872	37		Sample Acquisition	TCGA-BA-6872-01	United States	Yes		No	0	60	171	Cryovial
+TCGA-BA-6873	16		Sample Acquisition	TCGA-BA-6873-01	United States	Yes		No	0	60	114	Cryovial
+TCGA-BA-7269	32		Sample Acquisition	TCGA-BA-7269-01	United States	Yes		No	10	70	196	Cryovial
+TCGA-BA-A4IF	0		Sample Acquisition	TCGA-BA-A4IF-01	United States	No	No	No			220	Cryovial
+TCGA-BA-A4IG	41		Sample Acquisition	TCGA-BA-A4IG-01	United States	No	No	No			272	Cryovial
+TCGA-BA-A4IH	45		Sample Acquisition	TCGA-BA-A4IH-01	United States	No	No	No			458	Cryovial
+TCGA-BA-A4II	82		Sample Acquisition	TCGA-BA-A4II-01	United States	No	No	No			254	Cryovial
+TCGA-BA-A6D8	56		Sample Acquisition	TCGA-BA-A6D8-01	United States	Yes	No	No	10	60	233	Cryovial
+TCGA-BA-A6DA	22		Sample Acquisition	TCGA-BA-A6DA-01	United States	Yes	Yes	No	5	25	330	Cryovial
+TCGA-BA-A6DB	23		Sample Acquisition	TCGA-BA-A6DB-01	United States	Yes	Yes	No	1	10	165	Cryovial
+TCGA-BA-A6DD	26		Sample Acquisition	TCGA-BA-A6DD-01	United States	Yes	Yes	No	0	30	324	Cryovial
+TCGA-BA-A6DE	40		Sample Acquisition	TCGA-BA-A6DE-01	United States	Yes	Yes	No	0	20	214	Cryovial
+TCGA-BA-A6DF	0		Sample Acquisition	TCGA-BA-A6DF-01	United States	Yes	Yes	No	10	10	304	Cryovial
+TCGA-BA-A6DG	43		Sample Acquisition	TCGA-BA-A6DG-01	United States	Yes	Yes	No	30	30	223	Cryovial
+TCGA-BA-A6DI	0		Sample Acquisition	TCGA-BA-A6DI-01	United States	Yes	Yes	No	10	30	109	Cryovial
+TCGA-BA-A6DJ	58		Sample Acquisition	TCGA-BA-A6DJ-01	United States	Yes	Yes	No	0	40	486	Cryovial
+TCGA-BA-A6DL	0		Sample Acquisition	TCGA-BA-A6DL-01	United States	Yes	Yes	No	0	20	209	Cryovial
+TCGA-BA-A8YP	0		Sample Acquisition	TCGA-BA-A8YP-01	United States	Yes	Yes	No	5	50	323	Cryovial
+TCGA-BB-4217	52		Sample Acquisition	TCGA-BB-4217-01	United States	Yes		Yes	30	70	150	Cryovial
+TCGA-BB-4223	36		Sample Acquisition	TCGA-BB-4223-01	United States	Yes		Yes	30	70	100	Cryovial
+TCGA-BB-4224	-1		Sample Acquisition	TCGA-BB-4224-01	United States	Yes		Yes	30	70	100	Cryovial
+TCGA-BB-4225	-10		Sample Acquisition	TCGA-BB-4225-01	United States	Yes		Yes	30	70	100	Cryovial
+TCGA-BB-4227	7		Sample Acquisition	TCGA-BB-4227-01	United States	Yes		Yes	30	70	100	Cryovial
+TCGA-BB-4228	30		Sample Acquisition	TCGA-BB-4228-01	United States	Yes		Yes	30	70	100	Cryovial
+TCGA-BB-7861	0		Sample Acquisition	TCGA-BB-7861-01	United States	Yes	No	Yes	20	60	125	Cryovial
+TCGA-BB-7862	55		Sample Acquisition	TCGA-BB-7862-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-7863	42		Sample Acquisition	TCGA-BB-7863-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-7864	58		Sample Acquisition	TCGA-BB-7864-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-7866	0		Sample Acquisition	TCGA-BB-7866-01	United States	Yes	No	Yes	20	70	125	Cryovial
+TCGA-BB-7870	20		Sample Acquisition	TCGA-BB-7870-01	United States	Yes	No	Yes	20	95	125	Cryovial
+TCGA-BB-7871	49		Sample Acquisition	TCGA-BB-7871-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-7872	51		Sample Acquisition	TCGA-BB-7872-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-8596	46		Sample Acquisition	TCGA-BB-8596-01	United States	Yes	No	Yes	20	75	125	Cryovial
+TCGA-BB-8601	0		Sample Acquisition	TCGA-BB-8601-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-A5HU	30		Sample Acquisition	TCGA-BB-A5HU-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-A5HY	36		Sample Acquisition	TCGA-BB-A5HY-01	United States	Yes	No	Yes	5	95	125	Cryovial
+TCGA-BB-A5HZ	46		Sample Acquisition	TCGA-BB-A5HZ-01	United States	Yes	No	Yes	5	95	125	Cryovial
+TCGA-BB-A6UM	28		Sample Acquisition	TCGA-BB-A6UM-01	United States	Yes	No	Yes	20	80	125	Cryovial
+TCGA-BB-A6UO	34		Sample Acquisition	TCGA-BB-A6UO-01	United States	Yes	No	Yes	10	90	125	Cryovial
+TCGA-C9-A47Z	5		Sample Acquisition	TCGA-C9-A47Z-01	Vietnam	Yes	No	Yes	0	75	350	Other
+TCGA-C9-A480	4		Sample Acquisition	TCGA-C9-A480-01	Vietnam	Yes	Yes	Yes	0	50	300	Other
+TCGA-CN-4722	0		Sample Acquisition	TCGA-CN-4722-01		Yes		No	30	70	123	Cryovial
+TCGA-CN-4723	43		Sample Acquisition	TCGA-CN-4723-01		Yes		No	30	70	120	Cryovial
+TCGA-CN-4725	17		Sample Acquisition	TCGA-CN-4725-01		Yes		No	30	70	114	Cryovial
+TCGA-CN-4726	30		Sample Acquisition	TCGA-CN-4726-01		Yes		No	30	70	125	Cryovial
+TCGA-CN-4727	5		Sample Acquisition	TCGA-CN-4727-01	United States	Yes		No	30	70	123	Cryovial
+TCGA-CN-4728	0		Sample Acquisition	TCGA-CN-4728-01	United States	Yes		No	30	70	104	Cryovial
+TCGA-CN-4729	55		Sample Acquisition	TCGA-CN-4729-01		Yes		No	30	70	100	Cryovial
+TCGA-CN-4730	54		Sample Acquisition	TCGA-CN-4730-01		Yes		No	30	70	138	Cryovial
+TCGA-CN-4731	22		Sample Acquisition	TCGA-CN-4731-01		Yes		No	30	70	100	Cryovial
+TCGA-CN-4733	42		Sample Acquisition	TCGA-CN-4733-01		Yes		No	30	70	100	Cryovial
+TCGA-CN-4734	16		Sample Acquisition	TCGA-CN-4734-01		Yes		No	30	70	100	Cryovial
+TCGA-CN-4735	0		Sample Acquisition	TCGA-CN-4735-01		Yes		No	30	70	150	Cryovial
+TCGA-CN-4736	48		Sample Acquisition	TCGA-CN-4736-01		Yes		No	30	70	127	Cryovial
+TCGA-CN-4737	14		Sample Acquisition	TCGA-CN-4737-01		Yes		No	30	70	253	Cryovial
+TCGA-CN-4738	43		Sample Acquisition	TCGA-CN-4738-01		Yes		No	30	70	267	Cryovial
+TCGA-CN-4739	46		Sample Acquisition	TCGA-CN-4739-01		Yes		No	30	70	258	Cryovial
+TCGA-CN-4740	21		Sample Acquisition	TCGA-CN-4740-01		Yes		No	30	70	305	Cryovial
+TCGA-CN-4741	35		Sample Acquisition	TCGA-CN-4741-01		Yes		No	30	70	238	Cryovial
+TCGA-CN-4742	46		Sample Acquisition	TCGA-CN-4742-01		Yes		No	30	70	656	Cryovial
+TCGA-CN-5355	26		Sample Acquisition	TCGA-CN-5355-01		Yes		No	30	70	246	Cryovial
+TCGA-CN-5356	9		Sample Acquisition	TCGA-CN-5356-01		Yes		No	30	70	125	Cryovial
+TCGA-CN-5358	21		Sample Acquisition	TCGA-CN-5358-01		Yes		No	30	70	212	Cryovial
+TCGA-CN-5359	14		Sample Acquisition	TCGA-CN-5359-01		Yes		No	30	70	177	Cryovial
+TCGA-CN-5360	0		Sample Acquisition	TCGA-CN-5360-01		Yes		No	30	70	280	Cryovial
+TCGA-CN-5361	12		Sample Acquisition	TCGA-CN-5361-01		Yes		No	30	70	284	Cryovial
+TCGA-CN-5363	3		Sample Acquisition	TCGA-CN-5363-01		Yes		No	30	70	225	Cryovial
+TCGA-CN-5364	79		Sample Acquisition	TCGA-CN-5364-01		Yes		No	30	70	217	Cryovial
+TCGA-CN-5365	30		Sample Acquisition	TCGA-CN-5365-01		Yes		No	30	70	164	Cryovial
+TCGA-CN-5366	7		Sample Acquisition	TCGA-CN-5366-01		Yes		No	30	70	398	Cryovial
+TCGA-CN-5367	34		Sample Acquisition	TCGA-CN-5367-01		Yes		No	30	70	249	Cryovial
+TCGA-CN-5369	0		Sample Acquisition	TCGA-CN-5369-01		Yes		No	30	70	266	Cryovial
+TCGA-CN-5370	53		Sample Acquisition	TCGA-CN-5370-01		Yes		No	30	70	2257	Cryovial
+TCGA-CN-5373	22		Sample Acquisition	TCGA-CN-5373-01		Yes		No	30	70	135	Cryovial
+TCGA-CN-5374	70		Sample Acquisition	TCGA-CN-5374-01		Yes		No	30	70	133	Cryovial
+TCGA-CN-6010	0		Sample Acquisition	TCGA-CN-6010-01		Yes		No	30	70	180	Cryovial
+TCGA-CN-6011	33		Sample Acquisition	TCGA-CN-6011-01		Yes		No	30	70	277	Cryovial
+TCGA-CN-6012	0		Sample Acquisition	TCGA-CN-6012-01	United States	Yes		No	30	70	117	Cryovial
+TCGA-CN-6013	27		Sample Acquisition	TCGA-CN-6013-01	United States	Yes		No	30	70	143	Cryovial
+TCGA-CN-6016	42		Sample Acquisition	TCGA-CN-6016-01	United States	Yes		No	30	70	335	Cryovial
+TCGA-CN-6017	33		Sample Acquisition	TCGA-CN-6017-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CN-6018	22		Sample Acquisition	TCGA-CN-6018-01	United States	Yes		No	30	70	294	Cryovial
+TCGA-CN-6019	23		Sample Acquisition	TCGA-CN-6019-01	United States	Yes		No	30	70	164	Cryovial
+TCGA-CN-6020	5		Sample Acquisition	TCGA-CN-6020-01	United States	Yes		No	30	70	368	Cryovial
+TCGA-CN-6021	21		Sample Acquisition	TCGA-CN-6021-01	United States	Yes		No	30	70	157	Cryovial
+TCGA-CN-6022	21		Sample Acquisition	TCGA-CN-6022-01	United States	Yes		No	30	70	215	Cryovial
+TCGA-CN-6023	19		Sample Acquisition	TCGA-CN-6023-01	United States	Yes		No	30	70	284	Cryovial
+TCGA-CN-6024	23		Sample Acquisition	TCGA-CN-6024-01	United States	Yes		No	30	70	277	Cryovial
+TCGA-CN-6988	3		Sample Acquisition	TCGA-CN-6988-01	United States	Yes		No	30	70	339	Cryovial
+TCGA-CN-6989	11		Sample Acquisition	TCGA-CN-6989-01	United States	Yes		No	30	70	208	Cryovial
+TCGA-CN-6992	0		Sample Acquisition	TCGA-CN-6992-01	United States	Yes		No	30	70	172	Cryovial
+TCGA-CN-6994	30		Sample Acquisition	TCGA-CN-6994-01	United States	Yes		No	30	70	340	Cryovial
+TCGA-CN-6995	26		Sample Acquisition	TCGA-CN-6995-01	United States	Yes		No	30	70	449	Cryovial
+TCGA-CN-6996	29		Sample Acquisition	TCGA-CN-6996-01	United States	Yes		No	30	70	222	Cryovial
+TCGA-CN-6997	21		Sample Acquisition	TCGA-CN-6997-01	United States	Yes		No	30	70	113	Cryovial
+TCGA-CN-6998	13		Sample Acquisition	TCGA-CN-6998-01	United States	Yes		No	30	70	246	Cryovial
+TCGA-CN-A6UY	0		Sample Acquisition	TCGA-CN-A6UY-01	United States	Yes	No	Yes	5	80	205	Cryovial
+TCGA-CN-A6V1	0		Sample Acquisition	TCGA-CN-A6V1-01	United States	Yes	No	Yes	0	70	170	Cryovial
+TCGA-CN-A6V3	83		Sample Acquisition	TCGA-CN-A6V3-01	United States	Yes	No	Yes	20	70	223	Cryovial
+TCGA-CN-A6V6	33		Sample Acquisition	TCGA-CN-A6V6-01	United States	Yes	No	Yes	0	90	211	Cryovial
+TCGA-CN-A6V7	29		Sample Acquisition	TCGA-CN-A6V7-01	United States	Yes	No	Yes	0	80	147	Cryovial
+TCGA-CN-A49A	28		Sample Acquisition	TCGA-CN-A49A-01	United States	Yes	No	Yes	5	80	294	Cryovial
+TCGA-CN-A49B	0		Sample Acquisition	TCGA-CN-A49B-01	United States	Yes	No	Yes	0	70	274	Cryovial
+TCGA-CN-A49C	0		Sample Acquisition	TCGA-CN-A49C-01	United States	Yes	No	Yes	0	90	291	Cryovial
+TCGA-CN-A63T	9		Sample Acquisition	TCGA-CN-A63T-01	United States	Yes	No	Yes	0	80	167	Cryovial
+TCGA-CN-A63U	9		Sample Acquisition	TCGA-CN-A63U-01	United States	Yes	No	Yes	10	80	222	Cryovial
+TCGA-CN-A63V	23		Sample Acquisition	TCGA-CN-A63V-01	United States	Yes	Yes	Yes	30	70	748	Cryovial
+TCGA-CN-A63W	7		Sample Acquisition	TCGA-CN-A63W-01	United States	Yes	No	Yes	0	80	142	Cryovial
+TCGA-CN-A63Y	22		Sample Acquisition	TCGA-CN-A63Y-01	United States	Yes	No	Yes	0	70	266	Cryovial
+TCGA-CN-A497	23		Sample Acquisition	TCGA-CN-A497-01	United States	Yes	No	Yes	0	80	205	Cryovial
+TCGA-CN-A498	11		Sample Acquisition	TCGA-CN-A498-01	United States	Yes	No	Yes	0	90	181	Cryovial
+TCGA-CN-A499	32		Sample Acquisition	TCGA-CN-A499-01	United States	Yes	Yes	Yes	0	60	106	Cryovial
+TCGA-CN-A640	43		Sample Acquisition	TCGA-CN-A640-01	United States	Yes	No	Yes	0	70	154	Cryovial
+TCGA-CN-A641	115		Sample Acquisition	TCGA-CN-A641-01	United States	Yes	No	Yes	10	70	145	Cryovial
+TCGA-CN-A642	21		Sample Acquisition	TCGA-CN-A642-01	United States	Yes	No	Yes	0	90	447	Cryovial
+TCGA-CQ-5323	0		Sample Acquisition	TCGA-CQ-5323-01	Canada	Yes		No	5	80	104	Cryovial
+TCGA-CQ-5324	0		Sample Acquisition	TCGA-CQ-5324-01	Canada	Yes		No	5	70	107	Cryovial
+TCGA-CQ-5325	0		Sample Acquisition	TCGA-CQ-5325-01	Canada	Yes		No	0	70	109	Cryovial
+TCGA-CQ-5326	14		Sample Acquisition	TCGA-CQ-5326-01	Canada	Yes		No	20	70	103	Cryovial
+TCGA-CQ-5327	0		Sample Acquisition	TCGA-CQ-5327-01	Canada	Yes		No	10	80	102	Cryovial
+TCGA-CQ-5329	0		Sample Acquisition	TCGA-CQ-5329-01	Canada	Yes		No	10	70	102	Cryovial
+TCGA-CQ-5330	0		Sample Acquisition	TCGA-CQ-5330-01	Canada	Yes		No	10	70	103	Cryovial
+TCGA-CQ-5331	43		Sample Acquisition	TCGA-CQ-5331-01		Yes		No	0	80	111	Cryovial
+TCGA-CQ-5332	0		Sample Acquisition	TCGA-CQ-5332-01	Canada	Yes		No	20	70	114	Cryovial
+TCGA-CQ-5333	0		Sample Acquisition	TCGA-CQ-5333-01	Canada	Yes		No	10	70	101	Cryovial
+TCGA-CQ-5334	0		Sample Acquisition	TCGA-CQ-5334-01	Canada	Yes		No	10	80	100	Cryovial
+TCGA-CQ-6218	21		Sample Acquisition	TCGA-CQ-6218-01	Canada	Yes		No	0	80	102	Cryovial
+TCGA-CQ-6219	86		Sample Acquisition	TCGA-CQ-6219-01	Canada	Yes		No	5	80	109	Cryovial
+TCGA-CQ-6220	66		Sample Acquisition	TCGA-CQ-6220-01	Canada	Yes		No	0	80	107	Cryovial
+TCGA-CQ-6222	93		Sample Acquisition	TCGA-CQ-6222-01	Canada	Yes		No	9	70	102	Cryovial
+TCGA-CQ-6223	140		Sample Acquisition	TCGA-CQ-6223-01	Canada	Yes		No	0	85	47	Cryovial
+TCGA-CQ-6224	0		Sample Acquisition	TCGA-CQ-6224-01	Canada	Yes		No	0	70	90	Cryovial
+TCGA-CQ-6225	233		Sample Acquisition	TCGA-CQ-6225-01	Canada	Yes		No	15	70	103	Cryovial
+TCGA-CQ-6227	48		Sample Acquisition	TCGA-CQ-6227-01	Canada	Yes		No	10	70	102	Cryovial
+TCGA-CQ-6228	66		Sample Acquisition	TCGA-CQ-6228-01	Canada	Yes		No	10	70	106	Cryovial
+TCGA-CQ-6229	56		Sample Acquisition	TCGA-CQ-6229-01	Canada	Yes		No	0	70	99	Cryovial
+TCGA-CQ-7063	64		Sample Acquisition	TCGA-CQ-7063-01	Canada	Yes	No	No	0	90	91	Cryovial
+TCGA-CQ-7064	47		Sample Acquisition	TCGA-CQ-7064-01	Canada	Yes	No	No	0	90	103	Cryovial
+TCGA-CQ-7065	47		Sample Acquisition	TCGA-CQ-7065-01	Canada	Yes		No	0	80	88	Cryovial
+TCGA-CQ-7067	38		Sample Acquisition	TCGA-CQ-7067-01	Canada	Yes		No	0	70	124	Cryovial
+TCGA-CQ-7068	57		Sample Acquisition	TCGA-CQ-7068-01	Canada	Yes		No	0	80	108	Cryovial
+TCGA-CQ-7069	82		Sample Acquisition	TCGA-CQ-7069-01	Canada	Yes	No	No	0	80	87	Cryovial
+TCGA-CQ-7071	55		Sample Acquisition	TCGA-CQ-7071-01	Canada	Yes	No	No	0	70	130	Cryovial
+TCGA-CQ-7072	64		Sample Acquisition	TCGA-CQ-7072-01	Canada	Yes	No	No	0	80	117	Cryovial
+TCGA-CQ-A4C6	35		Sample Acquisition	TCGA-CQ-A4C6-01	Canada	Yes	No	No	5	70	80	Cryovial
+TCGA-CQ-A4C9	89		Sample Acquisition	TCGA-CQ-A4C9-01	Canada	Yes	No	No	5	70	78	Cryovial
+TCGA-CQ-A4CB	42		Sample Acquisition	TCGA-CQ-A4CB-01	Canada	Yes	No	No	5	70	77	Cryovial
+TCGA-CQ-A4CD	113		Sample Acquisition	TCGA-CQ-A4CD-01	Canada	Yes	No	No	5	70	85	Cryovial
+TCGA-CQ-A4CE	89		Sample Acquisition	TCGA-CQ-A4CE-01	Canada	Yes	No	No	0	70	107	Cryovial
+TCGA-CQ-A4CG	57		Sample Acquisition	TCGA-CQ-A4CG-01	Canada	Yes	No	No	5	70	113	Cryovial
+TCGA-CQ-A4CH	46		Sample Acquisition	TCGA-CQ-A4CH-01	Canada	Yes	No	No	5	70	120	Cryovial
+TCGA-CQ-A4CI	55		Sample Acquisition	TCGA-CQ-A4CI-01	Canada	Yes	No	No	5	70	81	Cryovial
+TCGA-CR-5243	13		Sample Acquisition	TCGA-CR-5243-01		Yes		No	20	80	100	Cryovial
+TCGA-CR-5247	0		Sample Acquisition	TCGA-CR-5247-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-5248	39		Sample Acquisition	TCGA-CR-5248-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-5249	0		Sample Acquisition	TCGA-CR-5249-01		Yes		No	20	80	100	Cryovial
+TCGA-CR-5250	28		Sample Acquisition	TCGA-CR-5250-01		Yes		No	20	80	100	Cryovial
+TCGA-CR-6467	0		Sample Acquisition	TCGA-CR-6467-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6470	42		Sample Acquisition	TCGA-CR-6470-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6471	34		Sample Acquisition	TCGA-CR-6471-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6472	18		Sample Acquisition	TCGA-CR-6472-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6473	0		Sample Acquisition	TCGA-CR-6473-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6474	44		Sample Acquisition	TCGA-CR-6474-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6477	0		Sample Acquisition	TCGA-CR-6477-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6478	34		Sample Acquisition	TCGA-CR-6478-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6480	0		Sample Acquisition	TCGA-CR-6480-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6481	8		Sample Acquisition	TCGA-CR-6481-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6482	0		Sample Acquisition	TCGA-CR-6482-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6484	48		Sample Acquisition	TCGA-CR-6484-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6487	36		Sample Acquisition	TCGA-CR-6487-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6488	49		Sample Acquisition	TCGA-CR-6488-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6491	70		Sample Acquisition	TCGA-CR-6491-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6492	35		Sample Acquisition	TCGA-CR-6492-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-6493	25		Sample Acquisition	TCGA-CR-6493-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CR-7364	35		Sample Acquisition	TCGA-CR-7364-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7365	43		Sample Acquisition	TCGA-CR-7365-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7367	48		Sample Acquisition	TCGA-CR-7367-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7368	54		Sample Acquisition	TCGA-CR-7368-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7369	31		Sample Acquisition	TCGA-CR-7369-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7370	0		Sample Acquisition	TCGA-CR-7370-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7371	82		Sample Acquisition	TCGA-CR-7371-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7372	55		Sample Acquisition	TCGA-CR-7372-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7373	36		Sample Acquisition	TCGA-CR-7373-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7374	0		Sample Acquisition	TCGA-CR-7374-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7376	47		Sample Acquisition	TCGA-CR-7376-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7377	76		Sample Acquisition	TCGA-CR-7377-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7379	46		Sample Acquisition	TCGA-CR-7379-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7380	58		Sample Acquisition	TCGA-CR-7380-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7382	62		Sample Acquisition	TCGA-CR-7382-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7383	0		Sample Acquisition	TCGA-CR-7383-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7385	30		Sample Acquisition	TCGA-CR-7385-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7386	49		Sample Acquisition	TCGA-CR-7386-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7388	33		Sample Acquisition	TCGA-CR-7388-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7389	17		Sample Acquisition	TCGA-CR-7389-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7390	74		Sample Acquisition	TCGA-CR-7390-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7391	51		Sample Acquisition	TCGA-CR-7391-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7392	32		Sample Acquisition	TCGA-CR-7392-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7393	26		Sample Acquisition	TCGA-CR-7393-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7394	45		Sample Acquisition	TCGA-CR-7394-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7395	47		Sample Acquisition	TCGA-CR-7395-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7397	16		Sample Acquisition	TCGA-CR-7397-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7398	7		Sample Acquisition	TCGA-CR-7398-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7399	39		Sample Acquisition	TCGA-CR-7399-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7401	61		Sample Acquisition	TCGA-CR-7401-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7402	0		Sample Acquisition	TCGA-CR-7402-01	United States	Yes		No	20	80	50	Cryovial
+TCGA-CR-7404	0		Sample Acquisition	TCGA-CR-7404-01	United States	Yes		No	20	80	100	Cryovial
+TCGA-CV-5430	0		Sample Acquisition	TCGA-CV-5430-01		Yes		No	0	75	200	Cryovial
+TCGA-CV-5431	0		Sample Acquisition	TCGA-CV-5431-01		Yes		No	0	80	200	Cryovial
+TCGA-CV-5432	0		Sample Acquisition	TCGA-CV-5432-01		Yes		No	0	75	200	Cryovial
+TCGA-CV-5434	0		Sample Acquisition	TCGA-CV-5434-01		Yes		No	0	75	200	Cryovial
+TCGA-CV-5435	0		Sample Acquisition	TCGA-CV-5435-01		Yes		No	0	70	200	Cryovial
+TCGA-CV-5436	0		Sample Acquisition	TCGA-CV-5436-01		Yes		No	0	75	200	Cryovial
+TCGA-CV-5439	0		Sample Acquisition	TCGA-CV-5439-01		Yes		No	0	75	200	Cryovial
+TCGA-CV-5440	0		Sample Acquisition	TCGA-CV-5440-01		Yes		No	0	75	200	Cryovial
+TCGA-CV-5441	0		Sample Acquisition	TCGA-CV-5441-01		Yes		No	0	70	200	Cryovial
+TCGA-CV-5442	2		Sample Acquisition	TCGA-CV-5442-01		Yes		No	0	75	200	Cryovial
+TCGA-CV-5443	0		Sample Acquisition	TCGA-CV-5443-01		Yes		No	0	70	200	Cryovial
+TCGA-CV-5444	0		Sample Acquisition	TCGA-CV-5444-01		Yes		No	0	70	200	Cryovial
+TCGA-CV-5966	0		Sample Acquisition	TCGA-CV-5966-01		Yes		No	30	70	200	Cryovial
+TCGA-CV-5970	0		Sample Acquisition	TCGA-CV-5970-01		Yes		No	30	70	200	Cryovial
+TCGA-CV-5971	0		Sample Acquisition	TCGA-CV-5971-01		Yes		No	30	70	200	Cryovial
+TCGA-CV-5973	0		Sample Acquisition	TCGA-CV-5973-01		Yes		No	30	70	200	Cryovial
+TCGA-CV-5976	0		Sample Acquisition	TCGA-CV-5976-01		Yes		No	30	70	200	Cryovial
+TCGA-CV-5977	0		Sample Acquisition	TCGA-CV-5977-01		Yes		No	20	80	200	Cryovial
+TCGA-CV-5978	0		Sample Acquisition	TCGA-CV-5978-01		Yes		No	30	70	200	Cryovial
+TCGA-CV-5979	0		Sample Acquisition	TCGA-CV-5979-01	United States	Yes		No	20	80	200	Cryovial
+TCGA-CV-6003	0		Sample Acquisition	TCGA-CV-6003-01		Yes		No	20	80	200	Cryovial
+TCGA-CV-6433	0		Sample Acquisition	TCGA-CV-6433-01	United States	Yes		No	20	80	200	Cryovial
+TCGA-CV-6436	0		Sample Acquisition	TCGA-CV-6436-01	United States	Yes		No	20	80	200	Cryovial
+TCGA-CV-6441	0		Sample Acquisition	TCGA-CV-6441-01	United States	Yes		No	25	75	200	Cryovial
+TCGA-CV-6933	0		Sample Acquisition	TCGA-CV-6933-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6934	0		Sample Acquisition	TCGA-CV-6934-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6935	0		Sample Acquisition	TCGA-CV-6935-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6936	0		Sample Acquisition	TCGA-CV-6936-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6937	0		Sample Acquisition	TCGA-CV-6937-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6938	0		Sample Acquisition	TCGA-CV-6938-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6939	0		Sample Acquisition	TCGA-CV-6939-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6940	0		Sample Acquisition	TCGA-CV-6940-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6941	0		Sample Acquisition	TCGA-CV-6941-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6942	0		Sample Acquisition	TCGA-CV-6942-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6943	0		Sample Acquisition	TCGA-CV-6943-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6945	0		Sample Acquisition	TCGA-CV-6945-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6948	0		Sample Acquisition	TCGA-CV-6948-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6950	0		Sample Acquisition	TCGA-CV-6950-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6951	0		Sample Acquisition	TCGA-CV-6951-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6952	0		Sample Acquisition	TCGA-CV-6952-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6953	0		Sample Acquisition	TCGA-CV-6953-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6954	0		Sample Acquisition	TCGA-CV-6954-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6955	0		Sample Acquisition	TCGA-CV-6955-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6956	0		Sample Acquisition	TCGA-CV-6956-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6959	0		Sample Acquisition	TCGA-CV-6959-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6960	0		Sample Acquisition	TCGA-CV-6960-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6961	0		Sample Acquisition	TCGA-CV-6961-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-6962	0		Sample Acquisition	TCGA-CV-6962-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7089	0		Sample Acquisition	TCGA-CV-7089-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7090	0		Sample Acquisition	TCGA-CV-7090-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7091	0		Sample Acquisition	TCGA-CV-7091-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7095	0		Sample Acquisition	TCGA-CV-7095-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7097	18		Sample Acquisition	TCGA-CV-7097-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7099	0		Sample Acquisition	TCGA-CV-7099-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7100	0		Sample Acquisition	TCGA-CV-7100-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7101	0		Sample Acquisition	TCGA-CV-7101-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7102	0		Sample Acquisition	TCGA-CV-7102-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7103	0		Sample Acquisition	TCGA-CV-7103-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7104	0		Sample Acquisition	TCGA-CV-7104-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7177	0		Sample Acquisition	TCGA-CV-7177-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7178	0		Sample Acquisition	TCGA-CV-7178-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7180	0		Sample Acquisition	TCGA-CV-7180-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7183	0		Sample Acquisition	TCGA-CV-7183-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7235	0		Sample Acquisition	TCGA-CV-7235-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7236	0		Sample Acquisition	TCGA-CV-7236-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7238	18		Sample Acquisition	TCGA-CV-7238-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7242	-7		Sample Acquisition	TCGA-CV-7242-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7243	0		Sample Acquisition	TCGA-CV-7243-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7245	0		Sample Acquisition	TCGA-CV-7245-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7247	0		Sample Acquisition	TCGA-CV-7247-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7248	0		Sample Acquisition	TCGA-CV-7248-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7250	0		Sample Acquisition	TCGA-CV-7250-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7252	0		Sample Acquisition	TCGA-CV-7252-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7253	0		Sample Acquisition	TCGA-CV-7253-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7254	0		Sample Acquisition	TCGA-CV-7254-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7255	0		Sample Acquisition	TCGA-CV-7255-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7261	0		Sample Acquisition	TCGA-CV-7261-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7263	0		Sample Acquisition	TCGA-CV-7263-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7406	507		Sample Acquisition	TCGA-CV-7406-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7407	0		Sample Acquisition	TCGA-CV-7407-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7409	0		Sample Acquisition	TCGA-CV-7409-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7410	718		Sample Acquisition	TCGA-CV-7410-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7411	0		Sample Acquisition	TCGA-CV-7411-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7413	0		Sample Acquisition	TCGA-CV-7413-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7414	0		Sample Acquisition	TCGA-CV-7414-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7415	0		Sample Acquisition	TCGA-CV-7415-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7416	445		Sample Acquisition	TCGA-CV-7416-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7418	0		Sample Acquisition	TCGA-CV-7418-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7421	0		Sample Acquisition	TCGA-CV-7421-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7422	0		Sample Acquisition	TCGA-CV-7422-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7423	0		Sample Acquisition	TCGA-CV-7423-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7424	0		Sample Acquisition	TCGA-CV-7424-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7425	0		Sample Acquisition	TCGA-CV-7425-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7427	0		Sample Acquisition	TCGA-CV-7427-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7428	0		Sample Acquisition	TCGA-CV-7428-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7429	0		Sample Acquisition	TCGA-CV-7429-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7430	0		Sample Acquisition	TCGA-CV-7430-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7432	0		Sample Acquisition	TCGA-CV-7432-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7433	0		Sample Acquisition	TCGA-CV-7433-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7434	0		Sample Acquisition	TCGA-CV-7434-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7435	0		Sample Acquisition	TCGA-CV-7435-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7437	34		Sample Acquisition	TCGA-CV-7437-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7438	0		Sample Acquisition	TCGA-CV-7438-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7440	216		Sample Acquisition	TCGA-CV-7440-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7446	0		Sample Acquisition	TCGA-CV-7446-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-7568	419		Sample Acquisition	TCGA-CV-7568-01	United States	Yes		No	30	70	200	Cryovial
+TCGA-CV-A6JD	0		Sample Acquisition	TCGA-CV-A6JD-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6JE	0		Sample Acquisition	TCGA-CV-A6JE-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6JM	0		Sample Acquisition	TCGA-CV-A6JM-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6JN	0		Sample Acquisition	TCGA-CV-A6JN-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6JO	0		Sample Acquisition	TCGA-CV-A6JO-01	United States	Yes	Yes	Yes	30	70		Cryovial
+TCGA-CV-A6JT	0		Sample Acquisition	TCGA-CV-A6JT-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6JU	0		Sample Acquisition	TCGA-CV-A6JU-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6JY	0		Sample Acquisition	TCGA-CV-A6JY-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6JZ	0		Sample Acquisition	TCGA-CV-A6JZ-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6K0	0		Sample Acquisition	TCGA-CV-A6K0-01	United States	Yes	Yes	Yes	30	70		Cryovial
+TCGA-CV-A6K1	0		Sample Acquisition	TCGA-CV-A6K1-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A6K2	0		Sample Acquisition	TCGA-CV-A6K2-01	United States	Yes	Yes	Yes			200	Cryovial
+TCGA-CV-A45O	0		Sample Acquisition	TCGA-CV-A45O-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45P	0		Sample Acquisition	TCGA-CV-A45P-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45Q	0		Sample Acquisition	TCGA-CV-A45Q-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45R	0		Sample Acquisition	TCGA-CV-A45R-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45T	0		Sample Acquisition	TCGA-CV-A45T-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45U	0		Sample Acquisition	TCGA-CV-A45U-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45V	0		Sample Acquisition	TCGA-CV-A45V-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45W	0		Sample Acquisition	TCGA-CV-A45W-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45X	0		Sample Acquisition	TCGA-CV-A45X-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45Y	0		Sample Acquisition	TCGA-CV-A45Y-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A45Z	0		Sample Acquisition	TCGA-CV-A45Z-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A460	0		Sample Acquisition	TCGA-CV-A460-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A461	0		Sample Acquisition	TCGA-CV-A461-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A463	0		Sample Acquisition	TCGA-CV-A463-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A464	0		Sample Acquisition	TCGA-CV-A464-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A465	0		Sample Acquisition	TCGA-CV-A465-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CV-A468	0		Sample Acquisition	TCGA-CV-A468-01	United States	Yes	No	Yes	30	70	200	Cryovial
+TCGA-CX-7085	15		Sample Acquisition	TCGA-CX-7085-01	United States	Yes		Yes	15	70	200	Cryovial
+TCGA-CX-7086	26		Sample Acquisition	TCGA-CX-7086-01	United States	Yes		Yes	10	85	200	Cryovial
+TCGA-CX-7219	26		Sample Acquisition	TCGA-CX-7219-01	United States	Yes		Yes	15	75	200	Cryovial
+TCGA-CX-A4AQ	0		Sample Acquisition	TCGA-CX-A4AQ-01	United States	Yes	No	No	0	75	100	Cryovial
+TCGA-D6-6515	36		Sample Acquisition	TCGA-D6-6515-01	Poland	Yes		Yes	10	80	227	Cryovial
+TCGA-D6-6516	18		Sample Acquisition	TCGA-D6-6516-01	Poland	Yes		Yes	20	80	192	Cryovial
+TCGA-D6-6517	11		Sample Acquisition	TCGA-D6-6517-01	Poland	Yes		Yes	10	90		Cryovial
+TCGA-D6-6823	9		Sample Acquisition	TCGA-D6-6823-01	Poland	Yes		Yes	10	90	310	Cryovial
+TCGA-D6-6824	42		Sample Acquisition	TCGA-D6-6824-01	Poland	Yes		Yes	20	80	265	Cryovial
+TCGA-D6-6825	0		Sample Acquisition	TCGA-D6-6825-01	Poland	Yes		Yes	5	95	166	Cryovial
+TCGA-D6-6826	20		Sample Acquisition	TCGA-D6-6826-01	Poland	Yes		Yes	10	99	255	Cryovial
+TCGA-D6-6827	15		Sample Acquisition	TCGA-D6-6827-01	Poland	Yes		Yes	5	90	182	Cryovial
+TCGA-D6-8568	0		Sample Acquisition	TCGA-D6-8568-01	Poland	Yes	No	Yes	1	75	100	Cryovial
+TCGA-D6-8569	22		Sample Acquisition	TCGA-D6-8569-01	Poland	Yes	No	Yes	5	95	100	Cryovial
+TCGA-D6-A4Z9	0		Sample Acquisition	TCGA-D6-A4Z9-01	Poland	Yes	No	Yes	10	70	165	Cryovial
+TCGA-D6-A4ZB	0		Sample Acquisition	TCGA-D6-A4ZB-01	Poland	Yes	No	Yes	1	75	123	Cryovial
+TCGA-D6-A6EK	0		Sample Acquisition	TCGA-D6-A6EK-01	Poland	Yes	No	Yes	5	80	136	Cryovial
+TCGA-D6-A6EM	1		Sample Acquisition	TCGA-D6-A6EM-01	Poland	Yes	No	Yes	5	80	109	Cryovial
+TCGA-D6-A6EN	0		Sample Acquisition	TCGA-D6-A6EN-01	Poland	Yes	No	Yes	5	99	100	Cryovial
+TCGA-D6-A6EO	0		Sample Acquisition	TCGA-D6-A6EO-01	Poland	Yes	No	Yes	10	80	298	Cryovial
+TCGA-D6-A6EP	-9		Sample Acquisition	TCGA-D6-A6EP-01	Poland	Yes	No	Yes	15	92	298	Cryovial
+TCGA-D6-A6EQ	-1		Sample Acquisition	TCGA-D6-A6EQ-01	Poland	Yes	No	Yes	10	75	180	Cryovial
+TCGA-D6-A6ES	39		Sample Acquisition	TCGA-D6-A6ES-01	Poland	Yes	No	Yes	10	95	100	Cryovial
+TCGA-D6-A74Q	0		Sample Acquisition	TCGA-D6-A74Q-01	Poland	Yes	No	Yes	1	85	100	Cryovial
+TCGA-DQ-5624	0		Sample Acquisition	TCGA-DQ-5624-01	United States	Yes		Yes	10	90	180	Cryomold
+TCGA-DQ-5625	0		Sample Acquisition	TCGA-DQ-5625-01	United States	Yes		Yes	0	90	120	Cryomold
+TCGA-DQ-5629	20		Sample Acquisition	TCGA-DQ-5629-01	United States	Yes		Yes	0	80	107	Cryomold
+TCGA-DQ-5630	0		Sample Acquisition	TCGA-DQ-5630-01	United States	Yes		Yes	5	70	200	Cryomold
+TCGA-DQ-5631	0		Sample Acquisition	TCGA-DQ-5631-01	United States	Yes		Yes	0	100	100	Cryomold
+TCGA-DQ-7588	0		Sample Acquisition	TCGA-DQ-7588-01	United States	Yes		Yes	0	70	320	Cryomold
+TCGA-DQ-7589	0		Sample Acquisition	TCGA-DQ-7589-01	United States	Yes		Yes	5	80	224	Cryomold
+TCGA-DQ-7590	0		Sample Acquisition	TCGA-DQ-7590-01	United States	Yes		Yes	0	85	144	Cryomold
+TCGA-DQ-7591	0		Sample Acquisition	TCGA-DQ-7591-01	United States	Yes		Yes	0	90	300	Cryomold
+TCGA-DQ-7592	0		Sample Acquisition	TCGA-DQ-7592-01	United States	Yes		Yes	0	85	120	Cryomold
+TCGA-DQ-7593	0		Sample Acquisition	TCGA-DQ-7593-01	United States	Yes		Yes	5	90	128	Cryomold
+TCGA-DQ-7594	0		Sample Acquisition	TCGA-DQ-7594-01	United States	Yes		Yes	5	90	200	Cryomold
+TCGA-DQ-7595	0		Sample Acquisition	TCGA-DQ-7595-01	United States	Yes		Yes	5	95	120	Cryomold
+TCGA-DQ-7596	0		Sample Acquisition	TCGA-DQ-7596-01	United States	Yes	No	Yes	0	90	120	Cryomold
+TCGA-F7-7848	0		Sample Acquisition	TCGA-F7-7848-01	Russia	Yes		Yes	3	85	692	Cassette
+TCGA-F7-8298	0		Sample Acquisition	TCGA-F7-8298-01	Russia	Yes	No	Yes	7	73	1195	Cassette
+TCGA-F7-8489	0		Sample Acquisition	TCGA-F7-8489-01	Russia	Yes	Yes	Yes	0	30	645	Cassette
+TCGA-F7-A50G	0		Sample Acquisition	TCGA-F7-A50G-01	Russia	Yes	No	Yes	0	90	856	Cassette
+TCGA-F7-A50I	76		Sample Acquisition	TCGA-F7-A50I-01	United States	Yes	No	Yes	0	100	158	Cassette
+TCGA-F7-A50J	32		Sample Acquisition	TCGA-F7-A50J-01	United States	Yes	No	Yes	0	88	151	Cassette
+TCGA-F7-A61S	2		Sample Acquisition	TCGA-F7-A61S-01	Ukraine	Yes	No	Yes	0	70	1394	Cassette
+TCGA-F7-A61V	-4		Sample Acquisition	TCGA-F7-A61V-01	United States	Yes	No	Yes	0	98	330	Cassette
+TCGA-F7-A61W	8		Sample Acquisition	TCGA-F7-A61W-01	Vietnam	Yes	No	Yes	0	80	613	Cassette
+TCGA-F7-A620	13		Sample Acquisition	TCGA-F7-A620-01	Ukraine	Yes	No	Yes	0	60	742	Cassette
+TCGA-F7-A622	13		Sample Acquisition	TCGA-F7-A622-01	Ukraine	Yes	No	Yes	0	95	355	Cassette
+TCGA-F7-A623	0		Sample Acquisition	TCGA-F7-A623-01	Russia	Yes	Yes	Yes	0	50	1043	Cassette
+TCGA-F7-A624	0		Sample Acquisition	TCGA-F7-A624-01	Russia	Yes	No	Yes	0	100	584	Cassette
+TCGA-H7-7774	30		Sample Acquisition	TCGA-H7-7774-01	United States	Yes		Yes	0	20	150	Cryovial
+TCGA-H7-8501	19		Sample Acquisition	TCGA-H7-8501-01	United States	Yes	No	Yes	10	70	270	Cryovial
+TCGA-H7-8502	30		Sample Acquisition	TCGA-H7-8502-01	United States	Yes	Yes	Yes	45	35	160	Cryovial
+TCGA-H7-A6C4	21		Sample Acquisition	TCGA-H7-A6C4-01	United States	Yes	Yes	Yes	0	55	170	Cryovial
+TCGA-H7-A6C5	13		Sample Acquisition	TCGA-H7-A6C5-01	United States	Yes	No	Yes	0	70	150	Cryovial
+TCGA-H7-A76A	8		Sample Acquisition	TCGA-H7-A76A-01	United States	Yes	Yes	Yes	0	40	530	Cryovial
+TCGA-HD-7229	0		Sample Acquisition	TCGA-HD-7229-01	United States	Yes		Yes	8	60	21	Cryovial
+TCGA-HD-7753	0		Sample Acquisition	TCGA-HD-7753-01	United States	Yes		Yes	0	68	33	Cryovial
+TCGA-HD-7754	21		Sample Acquisition	TCGA-HD-7754-01	United States	Yes		Yes	0	80	155	Cryovial
+TCGA-HD-7831	0		Sample Acquisition	TCGA-HD-7831-01	United States	Yes		Yes	0	60	28	Cryovial
+TCGA-HD-7832	0		Sample Acquisition	TCGA-HD-7832-01	United States	Yes		Yes	0	75	8	Cryovial
+TCGA-HD-7917	37		Sample Acquisition	TCGA-HD-7917-01	United States	Yes	No	Yes	0	60	54	Cryovial
+TCGA-HD-8224	55		Sample Acquisition	TCGA-HD-8224-01	United States	Yes	No	Yes	0	70	114	Cryovial
+TCGA-HD-8314	39		Sample Acquisition	TCGA-HD-8314-01	United States	Yes	No	Yes	0	70	182	Cryovial
+TCGA-HD-8634	24		Sample Acquisition	TCGA-HD-8634-01	United States	Yes	No	Yes	0	65	90	Cryovial
+TCGA-HD-8635	25		Sample Acquisition	TCGA-HD-8635-01	United States	Yes	No	Yes	0	65	74	Cryovial
+TCGA-HD-A4C1	3		Sample Acquisition	TCGA-HD-A4C1-01	United States	Yes	No	Yes	0	90	74	Cryovial
+TCGA-HD-A6HZ	108		Sample Acquisition	TCGA-HD-A6HZ-01	United States	Yes	No	No	0	70	68	Cryovial
+TCGA-HD-A6I0	27		Sample Acquisition	TCGA-HD-A6I0-01	United States	Yes	No	No	0	80	48	Cryovial
+TCGA-HD-A633	33		Sample Acquisition	TCGA-HD-A633-01	United States	Yes	No	No	10	85	70	Cryovial
+TCGA-HD-A634	6		Sample Acquisition	TCGA-HD-A634-01	United States	Yes	No	No	3	90	52	Cryovial
+TCGA-HL-7533	0		Sample Acquisition	TCGA-HL-7533-01	United States	Yes		Yes	0	80	200	Cryovial
+TCGA-IQ-7630	47		Sample Acquisition	TCGA-IQ-7630-01	United States	Yes		Yes	0	90	150	Polypropylene Tube
+TCGA-IQ-7631	49		Sample Acquisition	TCGA-IQ-7631-01	United States	Yes		Yes	0	80	150	Polypropylene Tube
+TCGA-IQ-7632	36		Sample Acquisition	TCGA-IQ-7632-01	United States	Yes		Yes	0	90	150	Polypropylene Tube
+TCGA-IQ-A6SG	-4		Sample Acquisition	TCGA-IQ-A6SG-01	United States	Yes	No	Yes	0	80	200	Cassette
+TCGA-IQ-A6SH	0		Sample Acquisition	TCGA-IQ-A6SH-01	United States	Yes	No	Yes	0	80	200	Cassette
+TCGA-IQ-A61E	47		Sample Acquisition	TCGA-IQ-A61E-01	United States	Yes	No	Yes	0	80	200	Cassette
+TCGA-IQ-A61G	34		Sample Acquisition	TCGA-IQ-A61G-01	United States	Yes	No	Yes	0	80	200	15 Ml Tube
+TCGA-IQ-A61H	52		Sample Acquisition	TCGA-IQ-A61H-01	United States	Yes	No	Yes	0	70	200	15 Ml Tube
+TCGA-IQ-A61I	0		Sample Acquisition	TCGA-IQ-A61I-01	United States	Yes	No	Yes	0	90	200	Cassette
+TCGA-IQ-A61J	0		Sample Acquisition	TCGA-IQ-A61J-01	United States	Yes	No	Yes	0	80	200	15Ml Tube
+TCGA-IQ-A61K	55		Sample Acquisition	TCGA-IQ-A61K-01	United States	Yes	No	Yes	0	90	200	15Ml Tube
+TCGA-IQ-A61L	20		Sample Acquisition	TCGA-IQ-A61L-01	United States	Yes	No	Yes	0	100	200	15Ml Tube
+TCGA-IQ-A61O	15		Sample Acquisition	TCGA-IQ-A61O-01	United States	Yes	No	Yes	0	100	200	15 Ml Tube
+TCGA-KU-A6H7	21		Sample Acquisition	TCGA-KU-A6H7-01	United States	Yes	No	Yes	0	90	105	Other
+TCGA-KU-A6H8	14		Sample Acquisition	TCGA-KU-A6H8-01	United States	Yes	Yes	Yes	0	35	785	Other
+TCGA-MT-A7BN	0		Sample Acquisition	TCGA-MT-A7BN-01	United States	Yes	Yes	Yes	5	50	170	Cryomold
+TCGA-MT-A51W	12		Sample Acquisition	TCGA-MT-A51W-01	United States	Yes	No	Yes	0	70	150	Cryomold
+TCGA-MT-A51X	29		Sample Acquisition	TCGA-MT-A51X-01	United States	Yes	No	Yes	0	80	140	Cryomold
+TCGA-MT-A67A	29		Sample Acquisition	TCGA-MT-A67A-01	United States	Yes	No	Yes	10	80	60	Cryovial
+TCGA-MT-A67D	39		Sample Acquisition	TCGA-MT-A67D-01	United States	Yes	No	Yes	0	60	300	Cryomold
+TCGA-MT-A67F	27		Sample Acquisition	TCGA-MT-A67F-01	United States	Yes	No	Yes	0	90	160	Cryomold
+TCGA-MT-A67G	0		Sample Acquisition	TCGA-MT-A67G-01	United States	Yes	No	Yes	0	80	170	Cryomold
+TCGA-MZ-A5BI	15		Sample Acquisition	TCGA-MZ-A5BI-01	United States	Yes	No	Yes	2	70	250	Other
+TCGA-MZ-A6I9	36		Sample Acquisition	TCGA-MZ-A6I9-01	United States	Yes	No	Yes	0	60	250	Cryovial
+TCGA-MZ-A7D7	37		Sample Acquisition	TCGA-MZ-A7D7-01	United States	Yes	No	Yes	0	70	87	Cryovial
+TCGA-P3-A5Q5	0		Sample Acquisition	TCGA-P3-A5Q5-01	United States	Yes	Yes	No	5	40	150	Cryomold
+TCGA-P3-A5Q6	0		Sample Acquisition	TCGA-P3-A5Q6-01	United States	Yes	Yes	No	5	40	150	Cryomold
+TCGA-P3-A5QA	0		Sample Acquisition	TCGA-P3-A5QA-01	United States	Yes	No	No	5	90	100	Cryomold
+TCGA-P3-A5QE	0		Sample Acquisition	TCGA-P3-A5QE-01	United States	Yes	No	No	5	60	100	Cryomold
+TCGA-P3-A5QF	0		Sample Acquisition	TCGA-P3-A5QF-01	United States	Yes	No	No	15	60	100	Cryomold
+TCGA-P3-A6SW	14		Sample Acquisition	TCGA-P3-A6SW-01	United States	Yes	Yes	No	15	40	150	Cryomold
+TCGA-P3-A6SX	-9		Sample Acquisition	TCGA-P3-A6SX-01	United States	Yes	Yes	No	10	50	150	Cryomold
+TCGA-P3-A6T0	1		Sample Acquisition	TCGA-P3-A6T0-01	United States	Yes	Yes	No	50	50	150	Cryomold
+TCGA-P3-A6T2	10		Sample Acquisition	TCGA-P3-A6T2-01	United States	Yes	Yes	No	5	30	150	Cryomold
+TCGA-P3-A6T3	-12		Sample Acquisition	TCGA-P3-A6T3-01	United States	Yes	Yes	No	10	40	150	Cryomold
+TCGA-P3-A6T4	-4		Sample Acquisition	TCGA-P3-A6T4-01	United States	Yes	No	No	5	80	150	Cryomold
+TCGA-P3-A6T5	8		Sample Acquisition	TCGA-P3-A6T5-01	United States	Yes	Yes	No	10	50	150	Cryomold
+TCGA-P3-A6T6	-9		Sample Acquisition	TCGA-P3-A6T6-01	United States	Yes	Yes	No	10	60	150	Cryomold
+TCGA-P3-A6T7	4		Sample Acquisition	TCGA-P3-A6T7-01	United States	Yes	Yes	No	10	50	150	Cryomold
+TCGA-P3-A6T8	9		Sample Acquisition	TCGA-P3-A6T8-01	United States	Yes	Yes	No	0	30	150	Cryomold
+TCGA-QK-A6IF	0		Sample Acquisition	TCGA-QK-A6IF-01	United States	Yes	Yes	Yes	0	40	90	Cryovial
+TCGA-QK-A6IG	0		Sample Acquisition	TCGA-QK-A6IG-01	United States	Yes	No	Yes	1	70	150	Cryovial
+TCGA-QK-A6IH	0		Sample Acquisition	TCGA-QK-A6IH-01	United States	Yes	No	Yes	1	65	100	Cryovial
+TCGA-QK-A6II	0		Sample Acquisition	TCGA-QK-A6II-01	United States	Yes	Yes	Yes	0	55	300	Cryovial
+TCGA-QK-A6IJ	0		Sample Acquisition	TCGA-QK-A6IJ-01	United States	Yes	No	Yes	0	65	90	Cryovial
+TCGA-QK-A6V9	0		Sample Acquisition	TCGA-QK-A6V9-01	United States	Yes	No	Yes	0	70	100	Cryovial
+TCGA-QK-A6VB	0		Sample Acquisition	TCGA-QK-A6VB-01	United States	Yes	No	Yes	5	75	500	Cryovial
+TCGA-QK-A6VC	0		Sample Acquisition	TCGA-QK-A6VC-01	United States	Yes	No	Yes	15	65	500	Cryovial
+TCGA-QK-A8Z7	0		Sample Acquisition	TCGA-QK-A8Z7-01	United States	Yes	No	Yes	10	65	300	Cryovial
+TCGA-QK-A8Z8	0		Sample Acquisition	TCGA-QK-A8Z8-01	United States	Yes	No	Yes	0	90	120	Cryovial
+TCGA-QK-A8Z9	0		Sample Acquisition	TCGA-QK-A8Z9-01	United States	Yes	No	Yes	0	70	300	Cryovial
+TCGA-QK-A8ZA	0		Sample Acquisition	TCGA-QK-A8ZA-01	United States	Yes	No	Yes	1	80	100	Cryovial
+TCGA-QK-A8ZB	0		Sample Acquisition	TCGA-QK-A8ZB-01	United States	Yes	No	Yes	1	70	200	Cryovial
+TCGA-QK-A64Z	0		Sample Acquisition	TCGA-QK-A64Z-01	United States	Yes	No	Yes	0	80	200	Cryomold
+TCGA-QK-A652	0		Sample Acquisition	TCGA-QK-A652-01	United States	Yes	Yes	Yes	0	30	300	Cryovial
+TCGA-QK-AA3J	0		Sample Acquisition	TCGA-QK-AA3J-01	United States	Yes	No	Yes	0	90	80	Cryovial
+TCGA-QK-AA3K	0		Sample Acquisition	TCGA-QK-AA3K-01	United States	Yes	No	Yes	0	95	200	Cryovial
+TCGA-RS-A6TO	0		Sample Acquisition	TCGA-RS-A6TO-01	United States	Yes	No	Yes	5	80	330	Cryomold
+TCGA-RS-A6TP	0		Sample Acquisition	TCGA-RS-A6TP-01	United States	Yes	No	Yes	5	70	270	Cryomold
+TCGA-T2-A6WX	31		Sample Acquisition	TCGA-T2-A6WX-01	United States	Yes	No	Yes	5	85	200	Cryomold
+TCGA-T2-A6WZ	57		Sample Acquisition	TCGA-T2-A6WZ-01	United States	Yes	No	Yes	0	60	200	Cryomold
+TCGA-T2-A6X0	33		Sample Acquisition	TCGA-T2-A6X0-01	United States	Yes	No	Yes	5	65	200	Cryomold
+TCGA-T2-A6X2	0		Sample Acquisition	TCGA-T2-A6X2-01	United States	Yes	No	Yes	0	65	200	Cryomold
+TCGA-T3-A92M	0		Sample Acquisition	TCGA-T3-A92M-01	United States	Yes	No	Yes	0	90	250	Cryovial
+TCGA-T3-A92N	-2		Sample Acquisition	TCGA-T3-A92N-01	United States	Yes	No	Yes	0	80	130	Cryovial
+TCGA-TN-A7HI	2		Sample Acquisition	TCGA-TN-A7HI-01	United States	Yes	No	Yes	10	80	110	Cryomold
+TCGA-TN-A7HJ	-12		Sample Acquisition	TCGA-TN-A7HJ-01	United States	Yes	No	Yes	5	95	210	Cryomold
+TCGA-TN-A7HL	1		Sample Acquisition	TCGA-TN-A7HL-01	United States	Yes	No	Yes	10	75	150	Cryomold
+TCGA-UF-A7J9	91		Sample Acquisition	TCGA-UF-A7J9-01	Brazil	Yes	No	Yes	10	60	63	Cryovial
+TCGA-UF-A7JA	123		Sample Acquisition	TCGA-UF-A7JA-01	Brazil	Yes	No	Yes	0	60	79	Cryovial
+TCGA-UF-A7JC	81		Sample Acquisition	TCGA-UF-A7JC-01	Brazil	Yes	No	Yes	0	90	264	Cryovial
+TCGA-UF-A7JD	154		Sample Acquisition	TCGA-UF-A7JD-01	Brazil	Yes	No	Yes	10	90	164	Cryovial
+TCGA-UF-A7JF	0		Sample Acquisition	TCGA-UF-A7JF-01	Brazil	Yes	No	Yes	0	80	74	Cryovial
+TCGA-UF-A7JH	54		Sample Acquisition	TCGA-UF-A7JH-01	Brazil	Yes	No	Yes	5	70	125	Cryovial
+TCGA-UF-A7JJ	24		Sample Acquisition	TCGA-UF-A7JJ-01	Brazil	Yes	No	Yes	0	70	199	Cryovial
+TCGA-UF-A7JK	85		Sample Acquisition	TCGA-UF-A7JK-01	Brazil	Yes	No	Yes	5	70	74	Cryovial
+TCGA-UF-A7JO	75		Sample Acquisition	TCGA-UF-A7JO-01	Brazil	Yes	No	Yes	0	70	50	Cryovial
+TCGA-UF-A7JS	21		Sample Acquisition	TCGA-UF-A7JS-01	Brazil	Yes	No	Yes	0	70	199	Cryovial
+TCGA-UF-A7JT	104		Sample Acquisition	TCGA-UF-A7JT-01	Brazil	Yes	No	Yes	0	80	191	Cryovial
+TCGA-UF-A7JV	0		Sample Acquisition	TCGA-UF-A7JV-01	Brazil	Yes	No	Yes	15	70	113	Cryovial
+TCGA-UF-A71A	82		Sample Acquisition	TCGA-UF-A71A-01	Brazil	Yes	No	Yes	0	60	227	Cryovial
+TCGA-UF-A71B	129		Sample Acquisition	TCGA-UF-A71B-01	Brazil	Yes	No	Yes	0	70	98	Cryovial
+TCGA-UF-A71D	97		Sample Acquisition	TCGA-UF-A71D-01	Brazil	Yes	No	Yes	0	90	166	Cryovial
+TCGA-UF-A71E	152		Sample Acquisition	TCGA-UF-A71E-01	Brazil	Yes	No	Yes	0	60	210	Cryovial
+TCGA-UF-A718	95		Sample Acquisition	TCGA-UF-A718-01	Brazil	Yes	No	Yes	0	90	158	Cryovial
+TCGA-UF-A719	84		Sample Acquisition	TCGA-UF-A719-01	Brazil	Yes	No	Yes	05	80	169	Cryovial
+TCGA-UP-A6WW	36		Sample Acquisition	TCGA-UP-A6WW-01	United States	Yes	Yes	Yes	10	60	210	Cryovial
+TCGA-WA-A7GZ	47		Sample Acquisition	TCGA-WA-A7GZ-01	Germany	Yes	No	No	0	70	70	Cryovial
+TCGA-WA-A7H4	24		Sample Acquisition	TCGA-WA-A7H4-01	Germany	Yes	No	No	0	65	146	Cryovial

data_timeline_status.txt

@@ -0,0 +1,1234 @@
+PATIENT_ID	START_DATE	STOP_DATE	EVENT_TYPE	STATUS	CLINICAL_STAGE	PATHOLOGIC_STAGE	SYSTEM_VERSION	CLINICAL_M	CLINICAL_N	CLINICAL_T	PATHOLOGIC_M	PATHOLOGIC_N	PATHOLOGIC_T	ANATOMIC_SITE	TUMOR_STATUS	PRIMARY_THERAPY_OUTCOME_SUCCESS	VITAL_STATUS
+TCGA-BA-A6DD	173		STATUS	DECEASED													
+TCGA-BA-A6DF	238		STATUS	DECEASED													
+TCGA-BA-A6DG	69		STATUS	DECEASED													
+TCGA-BA-A6DI	336		STATUS	DECEASED													
+TCGA-BB-A6UO	268		STATUS	DECEASED													
+TCGA-CV-5970	406		STATUS	DECEASED													
+TCGA-CV-5978	215		STATUS	DECEASED													
+TCGA-CV-6935	295		STATUS	DECEASED													
+TCGA-CV-6937	624		STATUS	DECEASED													
+TCGA-CV-6939	666		STATUS	DECEASED													
+TCGA-CV-6943	602		STATUS	DECEASED													
+TCGA-CV-6945	366		STATUS	DECEASED													
+TCGA-CV-6951	915		STATUS	DECEASED													
+TCGA-CV-6955	334		STATUS	DECEASED													
+TCGA-CV-7097	385		STATUS	DECEASED													
+TCGA-CV-7100	274		STATUS	DECEASED													
+TCGA-CV-7101	160		STATUS	DECEASED													
+TCGA-CV-7103	1591		STATUS	DECEASED													
+TCGA-CV-7178	2166		STATUS	DECEASED													
+TCGA-CV-7180	327		STATUS	DECEASED													
+TCGA-CV-7236	144		STATUS	DECEASED													
+TCGA-CV-7247	577		STATUS	DECEASED													
+TCGA-CV-7248	521		STATUS	DECEASED													
+TCGA-CV-7254	1459		STATUS	DECEASED													
+TCGA-CV-7263	560		STATUS	DECEASED													
+TCGA-CV-7406	1748		STATUS	DECEASED													
+TCGA-CV-7407	1081		STATUS	DECEASED													
+TCGA-CV-7410	6417		STATUS	DECEASED													
+TCGA-CV-7411	2717		STATUS	DECEASED													
+TCGA-CV-7415	695		STATUS	DECEASED													
+TCGA-CV-7416	763		STATUS	DECEASED													
+TCGA-CV-7423	3059		STATUS	DECEASED													
+TCGA-CV-7424	453		STATUS	DECEASED													
+TCGA-CV-7425	1718		STATUS	DECEASED													
+TCGA-CV-7428	1671		STATUS	DECEASED													
+TCGA-CV-7430	495		STATUS	DECEASED													
+TCGA-CV-7437	506		STATUS	DECEASED													
+TCGA-CV-7440	675		STATUS	DECEASED													
+TCGA-CV-7446	1093		STATUS	DECEASED													
+TCGA-CV-7568	927		STATUS	DECEASED													
+TCGA-CV-A6JO	197		STATUS	DECEASED													
+TCGA-IQ-A61I	2		STATUS	DECEASED													
+TCGA-IQ-A61K	161		STATUS	DECEASED													
+TCGA-MZ-A5BI	217		STATUS	DECEASED													
+TCGA-P3-A5QF	330		STATUS	DECEASED													
+TCGA-P3-A6SX	1430		STATUS	DECEASED													
+TCGA-P3-A6T3	577		STATUS	DECEASED													
+TCGA-P3-A6T4	62		STATUS	DECEASED													
+TCGA-P3-A6T7	487		STATUS	DECEASED													
+TCGA-QK-A8Z8	171		STATUS	DECEASED													
+TCGA-T2-A6WX	209		STATUS	DECEASED													
+TCGA-UF-A71A	86		STATUS	DECEASED													
+TCGA-UF-A7JK	424		STATUS	DECEASED													
+TCGA-UF-A7JO	631		STATUS	DECEASED													
+TCGA-UF-A7JT	993		STATUS	DECEASED													
+TCGA-UF-A7JV	90		STATUS	DECEASED													
+TCGA-BA-4074	462		STATUS	DECEASED													
+TCGA-BA-4076	415		STATUS	DECEASED													
+TCGA-BA-4078	276		STATUS	DECEASED													
+TCGA-BA-5149	806		STATUS	DECEASED													
+TCGA-BA-5153	1762		STATUS	DECEASED													
+TCGA-BA-5559	2083		STATUS	DECEASED													
+TCGA-BA-6868	472		STATUS	DECEASED													
+TCGA-BA-6870	451		STATUS	DECEASED													
+TCGA-BA-6871	108		STATUS	DECEASED													
+TCGA-BA-6872	384		STATUS	DECEASED													
+TCGA-BA-A6DJ	407		STATUS	DECEASED													
+TCGA-BB-A5HY	321		STATUS	DECEASED													
+TCGA-C9-A47Z	191		STATUS	DECEASED													
+TCGA-CN-4726	142		STATUS	DECEASED													
+TCGA-CN-4731	998		STATUS	DECEASED													
+TCGA-CN-4736	395		STATUS	DECEASED													
+TCGA-CN-4738	436		STATUS	DECEASED													
+TCGA-CN-4739	1394		STATUS	DECEASED													
+TCGA-CN-4740	839		STATUS	DECEASED													
+TCGA-CN-4742	397		STATUS	DECEASED													
+TCGA-CN-5358	261		STATUS	DECEASED													
+TCGA-CN-5359	377		STATUS	DECEASED													
+TCGA-CN-5361	2120		STATUS	DECEASED													
+TCGA-CN-5363	253		STATUS	DECEASED													
+TCGA-CN-5364	493		STATUS	DECEASED													
+TCGA-CN-5365	351		STATUS	DECEASED													
+TCGA-CN-5366	360		STATUS	DECEASED													
+TCGA-CN-5367	352		STATUS	DECEASED													
+TCGA-CN-5369	380		STATUS	DECEASED													
+TCGA-CN-5370	259		STATUS	DECEASED													
+TCGA-CN-5374	1732		STATUS	DECEASED													
+TCGA-CN-6013	727		STATUS	DECEASED													
+TCGA-CN-6017	853		STATUS	DECEASED													
+TCGA-CN-6018	580		STATUS	DECEASED													
+TCGA-CN-6020	205		STATUS	DECEASED													
+TCGA-CN-6021	276		STATUS	DECEASED													
+TCGA-CN-6022	281		STATUS	DECEASED													
+TCGA-CN-6024	337		STATUS	DECEASED													
+TCGA-CN-6989	980		STATUS	DECEASED													
+TCGA-CN-6995	112		STATUS	DECEASED													
+TCGA-CN-6996	530		STATUS	DECEASED													
+TCGA-CN-6997	988		STATUS	DECEASED													
+TCGA-CN-6998	357		STATUS	DECEASED													
+TCGA-CN-A49A	526		STATUS	DECEASED													
+TCGA-CN-A63W	377		STATUS	DECEASED													
+TCGA-CN-A498	773		STATUS	DECEASED													
+TCGA-CN-A640	134		STATUS	DECEASED													
+TCGA-CN-A642	82		STATUS	DECEASED													
+TCGA-CQ-5325	654		STATUS	DECEASED													
+TCGA-CQ-5326	89		STATUS	DECEASED													
+TCGA-CQ-5332	317		STATUS	DECEASED													
+TCGA-CQ-5333	341		STATUS	DECEASED													
+TCGA-CQ-5334	129		STATUS	DECEASED													
+TCGA-CQ-6219	479		STATUS	DECEASED													
+TCGA-CQ-6220	985		STATUS	DECEASED													
+TCGA-CQ-6225	403		STATUS	DECEASED													
+TCGA-CQ-6227	129		STATUS	DECEASED													
+TCGA-CQ-6228	456		STATUS	DECEASED													
+TCGA-CQ-A4CG	430		STATUS	DECEASED													
+TCGA-CQ-A4CH	379		STATUS	DECEASED													
+TCGA-CR-6471	1202		STATUS	DECEASED													
+TCGA-CR-6474	564		STATUS	DECEASED													
+TCGA-CR-6478	183		STATUS	DECEASED													
+TCGA-CR-6493	282		STATUS	DECEASED													
+TCGA-CR-7369	1090		STATUS	DECEASED													
+TCGA-CR-7371	94		STATUS	DECEASED													
+TCGA-CR-7377	279		STATUS	DECEASED													
+TCGA-CR-7380	606		STATUS	DECEASED													
+TCGA-CR-7383	521		STATUS	DECEASED													
+TCGA-CR-7388	823		STATUS	DECEASED													
+TCGA-CV-5431	522		STATUS	DECEASED													
+TCGA-CV-5434	3314		STATUS	DECEASED													
+TCGA-CV-5435	2319		STATUS	DECEASED													
+TCGA-CV-5436	584		STATUS	DECEASED													
+TCGA-CV-5439	546		STATUS	DECEASED													
+TCGA-CV-5966	545		STATUS	DECEASED													
+TCGA-CV-6441	292		STATUS	DECEASED													
+TCGA-CV-6933	2741		STATUS	DECEASED													
+TCGA-CV-6934	65		STATUS	DECEASED													
+TCGA-CV-6936	166		STATUS	DECEASED													
+TCGA-CV-6938	144		STATUS	DECEASED													
+TCGA-CV-6940	804		STATUS	DECEASED													
+TCGA-CV-6941	342		STATUS	DECEASED													
+TCGA-CV-6948	1289		STATUS	DECEASED													
+TCGA-CV-6950	459		STATUS	DECEASED													
+TCGA-CV-6952	185		STATUS	DECEASED													
+TCGA-CV-6953	1641		STATUS	DECEASED													
+TCGA-CV-6954	2002		STATUS	DECEASED													
+TCGA-CV-6956	217		STATUS	DECEASED													
+TCGA-CV-6959	256		STATUS	DECEASED													
+TCGA-CV-6960	862		STATUS	DECEASED													
+TCGA-CV-6961	76		STATUS	DECEASED													
+TCGA-CV-6962	126		STATUS	DECEASED													
+TCGA-CV-7089	1972		STATUS	DECEASED													
+TCGA-CV-7095	572		STATUS	DECEASED													
+TCGA-CV-7099	243		STATUS	DECEASED													
+TCGA-CV-7102	56		STATUS	DECEASED													
+TCGA-CV-7104	393		STATUS	DECEASED													
+TCGA-CV-7177	663		STATUS	DECEASED													
+TCGA-CV-7250	2900		STATUS	DECEASED													
+TCGA-CV-7252	151		STATUS	DECEASED													
+TCGA-CV-7253	361		STATUS	DECEASED													
+TCGA-CV-7255	64		STATUS	DECEASED													
+TCGA-CV-7409	543		STATUS	DECEASED													
+TCGA-CV-7413	294		STATUS	DECEASED													
+TCGA-CV-7414	14		STATUS	DECEASED													
+TCGA-CV-7418	789		STATUS	DECEASED													
+TCGA-CV-7421	2		STATUS	DECEASED													
+TCGA-CV-7422	1037		STATUS	DECEASED													
+TCGA-CV-7427	4760		STATUS	DECEASED													
+TCGA-CV-7429	107		STATUS	DECEASED													
+TCGA-CV-7432	2570		STATUS	DECEASED													
+TCGA-CV-7433	601		STATUS	DECEASED													
+TCGA-CV-7434	218		STATUS	DECEASED													
+TCGA-CV-7435	4680		STATUS	DECEASED													
+TCGA-CV-7438	194		STATUS	DECEASED													
+TCGA-CV-A6JD	182		STATUS	DECEASED													
+TCGA-CV-A6JM	194		STATUS	DECEASED													
+TCGA-CV-A6K2	317		STATUS	DECEASED													
+TCGA-CV-A45Q	5152		STATUS	DECEASED													
+TCGA-CV-A45T	4856		STATUS	DECEASED													
+TCGA-CV-A45U	1079		STATUS	DECEASED													
+TCGA-CV-A45V	32		STATUS	DECEASED													
+TCGA-CV-A45W	1398		STATUS	DECEASED													
+TCGA-CV-A45X	198		STATUS	DECEASED													
+TCGA-CV-A45Y	2703		STATUS	DECEASED													
+TCGA-CV-A45Z	1466		STATUS	DECEASED													
+TCGA-CV-A460	1838		STATUS	DECEASED													
+TCGA-CV-A461	2064		STATUS	DECEASED													
+TCGA-CV-A463	23		STATUS	DECEASED													
+TCGA-CV-A465	215		STATUS	DECEASED													
+TCGA-CV-A468	464		STATUS	DECEASED													
+TCGA-D6-6515	403		STATUS	DECEASED													
+TCGA-D6-6826	348		STATUS	DECEASED													
+TCGA-DQ-5625	1133		STATUS	DECEASED													
+TCGA-DQ-5629	941		STATUS	DECEASED													
+TCGA-DQ-5631	548		STATUS	DECEASED													
+TCGA-DQ-7588	427		STATUS	DECEASED													
+TCGA-F7-A622	359		STATUS	DECEASED													
+TCGA-HD-7917	836		STATUS	DECEASED													
+TCGA-HD-8224	446		STATUS	DECEASED													
+TCGA-HD-8634	385		STATUS	DECEASED													
+TCGA-HD-A634	130		STATUS	DECEASED													
+TCGA-IQ-A61O	421		STATUS	DECEASED													
+TCGA-KU-A6H8	327		STATUS	DECEASED													
+TCGA-KU-A66S	406		STATUS	DECEASED													
+TCGA-MZ-A6I9	489		STATUS	DECEASED													
+TCGA-P3-A5Q6	480		STATUS	DECEASED													
+TCGA-P3-A6T5	882		STATUS	DECEASED													
+TCGA-P3-A6T6	395		STATUS	DECEASED													
+TCGA-QK-A6IG	222		STATUS	DECEASED													
+TCGA-QK-A6II	284		STATUS	DECEASED													
+TCGA-QK-A8Z9	449		STATUS	DECEASED													
+TCGA-QK-A8ZA	371		STATUS	DECEASED													
+TCGA-QK-A64Z	641		STATUS	DECEASED													
+TCGA-RS-A6TO	387		STATUS	DECEASED													
+TCGA-T2-A6WZ	484		STATUS	DECEASED													
+TCGA-T3-A92N	95		STATUS	DECEASED													
+TCGA-UF-A7JC	546		STATUS	DECEASED													
+TCGA-UF-A7JD	739		STATUS	DECEASED													
+TCGA-UF-A7JS	680		STATUS	DECEASED													
+TCGA-UF-A71E	1504		STATUS	DECEASED													
+TCGA-WA-A7GZ	625		STATUS	DECEASED													
+TCGA-CN-6020	98		STATUS	Last Known Alive													
+TCGA-CQ-5327	1184		STATUS	Last Known Alive													
+TCGA-CV-5431	176		STATUS	Last Known Alive													
+TCGA-CV-5432	3930		STATUS	Last Known Alive													
+TCGA-CV-5434	3295		STATUS	Last Known Alive													
+TCGA-CV-5435	1704		STATUS	Last Known Alive													
+TCGA-CV-5436	548		STATUS	Last Known Alive													
+TCGA-CV-5439	501		STATUS	Last Known Alive													
+TCGA-CV-5440	2732		STATUS	Last Known Alive													
+TCGA-CV-5443	2567		STATUS	Last Known Alive													
+TCGA-CV-5444	1969		STATUS	Last Known Alive													
+TCGA-CV-5970	406		STATUS	Last Known Alive													
+TCGA-CV-5971	540		STATUS	Last Known Alive													
+TCGA-CV-5976	1478		STATUS	Last Known Alive													
+TCGA-CV-5978	215		STATUS	Last Known Alive													
+TCGA-CV-5979	1315		STATUS	Last Known Alive													
+TCGA-CV-6003	1246		STATUS	Last Known Alive													
+TCGA-CV-6433	405		STATUS	Last Known Alive													
+TCGA-DQ-5624	1149		STATUS	Last Known Alive													
+TCGA-DQ-5629	516		STATUS	Last Known Alive													
+TCGA-DQ-5630	477		STATUS	Last Known Alive													
+TCGA-DQ-5631	540		STATUS	Last Known Alive													
+TCGA-4P-AA8J	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t4a	mx	n2c	t2				
+TCGA-BA-4074	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t3	m0	n2c	t2				
+TCGA-BA-4076	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2c	t3		nx	tx				
+TCGA-BA-4078	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2a	t2							
+TCGA-BA-5149	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n2c	t3				
+TCGA-BA-5151	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-BA-5152	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-BA-5153	0		STATUS	Initial Diagnosis	stage III		6th	m0	n1	t2		nx	t2				
+TCGA-BA-5555	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t2		n2c	t3				
+TCGA-BA-5556	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-BA-5557	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n2	t2		n1	t1				
+TCGA-BA-5558	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n1	t4a		nx	tx				
+TCGA-BA-5559	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t3		nx	tx				
+TCGA-BA-6868	0		STATUS	Initial Diagnosis	stage IVb		7th	m0	n3	t3		nx	tx				
+TCGA-BA-6869	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-BA-6870	0		STATUS	Initial Diagnosis	stage IVc		7th	m1	n2c	t3		nx	tx				
+TCGA-BA-6871	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t3		nx	tx				
+TCGA-BA-6872	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2c	t3		nx	tx				
+TCGA-BA-6873	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2		n2b	t4a				
+TCGA-BA-7269	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t2		n1	t2				
+TCGA-BA-A4IF	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n0	t4	mx	nx	tx				
+TCGA-BA-A4IG	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2	t2	mx	nx	t1				
+TCGA-BA-A4IH	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t2	m0	n1	t2				
+TCGA-BA-A4II	0		STATUS	Initial Diagnosis	stage I	stage II	7th	m0	n0	t1	m0	n0	t2				
+TCGA-BA-A6D8	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	m0	n2c	t4a				
+TCGA-BA-A6DA	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	m0	n2c	t4a				
+TCGA-BA-A6DB	0		STATUS	Initial Diagnosis	stage II	stage I	7th	m0	n0	t2	m0	n0	t1				
+TCGA-BA-A6DD	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	m0	n2c	t4a				
+TCGA-BA-A6DE	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n0	t3	m0	n0	t2				
+TCGA-BA-A6DF	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a	m0	n0	t4a				
+TCGA-BA-A6DG	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t4a	mx	nx	tx				
+TCGA-BA-A6DI	0		STATUS	Initial Diagnosis	stage III		7th	m0	n0	t3	m0	nx	tx				
+TCGA-BA-A6DJ	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4	m0	n2c	t4a				
+TCGA-BA-A6DL	0		STATUS	Initial Diagnosis	stage III		7th	m0	n0	t3	m0	n0	t0				
+TCGA-BA-A8YP	0		STATUS	Initial Diagnosis	stage IVb	stage IVb	7th	m0	n3	t4	m0	n3	t4a				
+TCGA-BB-4217	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	m0	n2c	t4a				
+TCGA-BB-4223	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	m0	n2b	t2				
+TCGA-BB-4224	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n2b	t2				
+TCGA-BB-4225	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2c	t3		nx	tx				
+TCGA-BB-4227	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2b	t4a				
+TCGA-BB-4228	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2		nx	t3				
+TCGA-BB-7861	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	tx		n1	t1				
+TCGA-BB-7862	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2		n2c	t3				
+TCGA-BB-7863	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-BB-7864	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t3		n2c	t2				
+TCGA-BB-7866	0		STATUS	Initial Diagnosis	stage III		7th	m0	n1	t3		nx	tx				
+TCGA-BB-7870	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n0	t4a				
+TCGA-BB-7871	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a		n2c	t4a				
+TCGA-BB-7872	0		STATUS	Initial Diagnosis	stage IVa	stage I	7th	m0	n2c	t2		n0	t1				
+TCGA-BB-8596	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4	mx	nx	t4a				
+TCGA-BB-8601	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	mx	n1	t3				
+TCGA-BB-A5HU	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4	m0	n2b	t4				
+TCGA-BB-A5HY	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	m0	n2b	t3				
+TCGA-BB-A5HZ	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4	m0	n1	t4a				
+TCGA-BB-A6UM	0		STATUS	Initial Diagnosis	stage III	stage III	7th	mx	n2b	t2	mx	n2	t1				
+TCGA-BB-A6UO	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	mx	n2	t3	mx	n2b	t4a				
+TCGA-C9-A47Z	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t2	m0	n1	t2				
+TCGA-C9-A480	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3	m0	n0	t3				
+TCGA-CN-4722	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CN-4723	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-CN-4725	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CN-4726	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t3		n2b	t3				
+TCGA-CN-4727	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-CN-4728	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t2		n2b	t3				
+TCGA-CN-4729	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n0	t4a		n1	t2				
+TCGA-CN-4730	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n1	t4a				
+TCGA-CN-4731	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t4a		n2c	t4a				
+TCGA-CN-4733	0		STATUS	Initial Diagnosis	stage I	stage III	7th	m0	n0	t1		n1	t1				
+TCGA-CN-4734	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CN-4735	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n2b	t3				
+TCGA-CN-4736	0		STATUS	Initial Diagnosis	stage II		7th	m0	n0	t2		nx	t1				
+TCGA-CN-4737	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2		n2b	t2				
+TCGA-CN-4738	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CN-4739	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CN-4740	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CN-4741	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CN-4742	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4a	m0	n2b	t4a				
+TCGA-CN-5355	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-CN-5356	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-CN-5358	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n1	t2		n0	t2				
+TCGA-CN-5359	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4a	m0	n2b	t4a				
+TCGA-CN-5360	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CN-5361	0		STATUS	Initial Diagnosis		stage IVa	6th		nx	tx	m0	n2a	t4a				
+TCGA-CN-5363	0		STATUS	Initial Diagnosis	stage IVb	stage IVb	6th	m0	n3	t4a	m0	n3	t4a				
+TCGA-CN-5364	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t4a	m0	n2c	t4a				
+TCGA-CN-5365	0		STATUS	Initial Diagnosis	stage IVc	stage IVb	6th	m1	n2	t1		n3	t2				
+TCGA-CN-5366	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t4a	m0	n2c	t4a				
+TCGA-CN-5367	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n2b	t4a				
+TCGA-CN-5369	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4a	m0	n0	t4a				
+TCGA-CN-5370	0		STATUS	Initial Diagnosis	stage II	stage III	6th	m0	n0	t2	m0	n1	t3				
+TCGA-CN-5373	0		STATUS	Initial Diagnosis	stage II	stage I	7th	m0	n0	t2		n0	t1				
+TCGA-CN-5374	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2	t2	m0	n2	t2				
+TCGA-CN-6010	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n2c	t4a				
+TCGA-CN-6011	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-CN-6012	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3		n2c	t3				
+TCGA-CN-6013	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2b	t4a				
+TCGA-CN-6016	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n1	t4a				
+TCGA-CN-6017	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t2		n2b	t3				
+TCGA-CN-6018	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a		n2b	t4a				
+TCGA-CN-6019	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-CN-6020	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n2c	t3		n1	t2				
+TCGA-CN-6021	0		STATUS	Initial Diagnosis	stage III		6th	m0	n0	t3		nx	tx				
+TCGA-CN-6022	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a	m0	n1	t4a				
+TCGA-CN-6023	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n2c	t3				
+TCGA-CN-6024	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2	t4a	m0	n2c	t4a				
+TCGA-CN-6988	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2b	t4a				
+TCGA-CN-6989	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n2c	t3				
+TCGA-CN-6992	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2b	t3				
+TCGA-CN-6994	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n0	t4a				
+TCGA-CN-6995	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n0	t4a				
+TCGA-CN-6996	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n2b	t3				
+TCGA-CN-6997	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t4a		n2c	t3				
+TCGA-CN-6998	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2b	t3				
+TCGA-CN-A497	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n2c	t2	mx	n1	t1				
+TCGA-CN-A498	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	mx	n0	t3				
+TCGA-CN-A499	0		STATUS	Initial Diagnosis	stage I	stage II	7th	m0	n0	t1	mx	n0	t2				
+TCGA-CN-A49A	0		STATUS	Initial Diagnosis	stage IVa	stage IVb	7th	m0	n0	t4a	mx	n0	t4b				
+TCGA-CN-A49B	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t3	mx	n1	t3				
+TCGA-CN-A49C	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t4a	mx	nx	tx				
+TCGA-CN-A63T	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	mx	n2b	t3				
+TCGA-CN-A63U	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3	mx	n2b	t3				
+TCGA-CN-A63V	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4	mx	n0	t4a				
+TCGA-CN-A63W	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	mx	n2c	t4a				
+TCGA-CN-A63Y	0		STATUS	Initial Diagnosis	stage I	stage II	7th	m0	n0	t1	mx	n0	t2				
+TCGA-CN-A640	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	mx	n2b	t2				
+TCGA-CN-A641	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4	mx	n2b	t4a				
+TCGA-CN-A642	0		STATUS	Initial Diagnosis	stage IVa	stage IVb	7th	m0	n2c	t3	m0	n3	t4a				
+TCGA-CN-A6UY	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t3	mx	n2b	t3				
+TCGA-CN-A6V1	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2	mx	n2a	t2				
+TCGA-CN-A6V3	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	m0	n2b	t3				
+TCGA-CN-A6V6	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2	mx	n2b	t2				
+TCGA-CN-A6V7	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2	mx	n2b	t2				
+TCGA-CQ-5323	0		STATUS	Initial Diagnosis	stage III	stage I	6th	m0	n0	t3		n0	t1				
+TCGA-CQ-5324	0		STATUS	Initial Diagnosis	stage IVa	stage III	6th	m0	n2a	t3		n0	t3				
+TCGA-CQ-5325	0		STATUS	Initial Diagnosis	stage I	stage I	6th	m0	n0	t1		n0	t1				
+TCGA-CQ-5326	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t4a		n2c	t4a				
+TCGA-CQ-5327	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t3		n2c	t3				
+TCGA-CQ-5329	0		STATUS	Initial Diagnosis	stage III	stage II	6th	m0	n1	t3		n0	t2				
+TCGA-CQ-5330	0		STATUS	Initial Diagnosis	stage III	stage IVa	6th	m0	n1	t3		n2b	t3				
+TCGA-CQ-5331	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n0	t4a		nx	t2				
+TCGA-CQ-5332	0		STATUS	Initial Diagnosis	stage III	stage III	6th	m0	n0	t3		n0	t3				
+TCGA-CQ-5333	0		STATUS	Initial Diagnosis	stage I	stage II	6th	m0	n0	t1		n0	t2				
+TCGA-CQ-5334	0		STATUS	Initial Diagnosis	stage IVb	stage IVa	6th	m0	n2b	t4b		n2b	t3				
+TCGA-CQ-6218	0		STATUS	Initial Diagnosis	stage III	stage IVa	6th	m0	n0	t3		n2b	t3				
+TCGA-CQ-6219	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t3		n2a	t3				
+TCGA-CQ-6220	0		STATUS	Initial Diagnosis	stage III	stage III	6th	m0	n1	t2		n0	t3				
+TCGA-CQ-6222	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t3		n2b	t2				
+TCGA-CQ-6223	0		STATUS	Initial Diagnosis	stage IVa	stage II	6th	m0	n0	t4a		n0	t2				
+TCGA-CQ-6224	0		STATUS	Initial Diagnosis	stage II	stage IVa	6th	m0	n0	t2		n2b	t2				
+TCGA-CQ-6225	0		STATUS	Initial Diagnosis	stage II	stage III	6th	m0	n0	t2		n0	t3				
+TCGA-CQ-6227	0		STATUS	Initial Diagnosis	stage III	stage IVa	6th	m0	n1	t3		n2c	t3				
+TCGA-CQ-6228	0		STATUS	Initial Diagnosis	stage III	stage IVa	6th	m0	n1	t2		n2b	t1				
+TCGA-CQ-6229	0		STATUS	Initial Diagnosis	stage III	stage II	6th	m0	n1	t2		n0	t2				
+TCGA-CQ-7063	0		STATUS	Initial Diagnosis		stage I	6th				m0	nx	t1				
+TCGA-CQ-7064	0		STATUS	Initial Diagnosis	stage III	stage III	6th	m0	n1	t3	m0	n1	t3				
+TCGA-CQ-7065	0		STATUS	Initial Diagnosis	stage II	stage II	6th	m0	n0	t2		n0	t2				
+TCGA-CQ-7067	0		STATUS	Initial Diagnosis	stage I	stage I	6th	m0	n0	t1		n0	t1				
+TCGA-CQ-7068	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CQ-7069	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-CQ-7071	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n1	t4a	m0	n1	t2				
+TCGA-CQ-7072	0		STATUS	Initial Diagnosis	stage IVa	stage II	6th	m0	n0	t4a	m0	n0	t2				
+TCGA-CQ-A4C6	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-CQ-A4C9	0		STATUS	Initial Diagnosis		stage III	7th	mx	nx	tx	m0	n1	t2				
+TCGA-CQ-A4CB	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	m0	n1	t1				
+TCGA-CQ-A4CD	0		STATUS	Initial Diagnosis	stage IVb	stage IVa	7th	m0	n0	t4b	m0	n0	t4a				
+TCGA-CQ-A4CE	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-CQ-A4CG	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	m0	n0	t3				
+TCGA-CQ-A4CH	0		STATUS	Initial Diagnosis	stage IVa	stage II	7th	m0	n2c	t4a	m0	n0	t2				
+TCGA-CQ-A4CI	0		STATUS	Initial Diagnosis		stage III	7th	mx	nx	tx	m0	n1	t2				
+TCGA-CR-5243	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t3		nx	tx				
+TCGA-CR-5247	0		STATUS	Initial Diagnosis	stage III		6th	m0	n1	t3		nx	tx				
+TCGA-CR-5248	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2c	t4a		nx	tx				
+TCGA-CR-5249	0		STATUS	Initial Diagnosis	stage II	stage II	6th	m0	n0	t2	m0	n0	t2				
+TCGA-CR-5250	0		STATUS	Initial Diagnosis	stage II		6th	m0	n0	t2		nx	tx				
+TCGA-CR-6467	0		STATUS	Initial Diagnosis	stage IVa	stage III	6th	m0	n2b	t2	m0	n1	t2				
+TCGA-CR-6470	0		STATUS	Initial Diagnosis	stage IVa	stage II	6th	m0	n2c	t1	m0	n0	t2				
+TCGA-CR-6471	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n1	t4a				
+TCGA-CR-6472	0		STATUS	Initial Diagnosis	stage IVb		6th	m0	n3	t2							
+TCGA-CR-6473	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t3							
+TCGA-CR-6474	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2a	t3	m0	n2b	t2				
+TCGA-CR-6477	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t3							
+TCGA-CR-6478	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2c	t3							
+TCGA-CR-6480	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2a	t2							
+TCGA-CR-6481	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2a	t2							
+TCGA-CR-6482	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t2							
+TCGA-CR-6484	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n2	t4a				
+TCGA-CR-6487	0		STATUS	Initial Diagnosis	stage II	stage I	7th	m0	n0	t2	m0	n0	t1				
+TCGA-CR-6488	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CR-6491	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	nx	t4a	m0	n2b	t4a				
+TCGA-CR-6492	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n1	t4a	m0	n1	t2				
+TCGA-CR-6493	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n2b	t3				
+TCGA-CR-7364	0		STATUS	Initial Diagnosis	stage III	stage III	6th	m0	n0	t3	m0	n0	t3				
+TCGA-CR-7365	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t4a	m0	n0	t4a				
+TCGA-CR-7367	0		STATUS	Initial Diagnosis	stage IVb	stage IVa	6th	m0	n3	t4a	m0	n1	t4a				
+TCGA-CR-7368	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n1	t4a				
+TCGA-CR-7369	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n2b	t4a				
+TCGA-CR-7370	0		STATUS	Initial Diagnosis	stage II		6th	m0	n0	t2		nx	tx				
+TCGA-CR-7371	0		STATUS	Initial Diagnosis	stage III	stage III	6th	m0	n0	t3	m0	n1	t3				
+TCGA-CR-7372	0		STATUS	Initial Diagnosis	stage II	stage I	6th	m0	n0	t2	m0	n0	t1				
+TCGA-CR-7373	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t4a	m0	n1	t4a				
+TCGA-CR-7374	0		STATUS	Initial Diagnosis	stage II		6th	m0	n0	t2		nx	tx				
+TCGA-CR-7376	0		STATUS	Initial Diagnosis	stage II	stage III	6th	m0	n0	t2	m0	n1	t2				
+TCGA-CR-7377	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4a	m0	n2c	t4a				
+TCGA-CR-7379	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t4a	m0	n2b	t4a				
+TCGA-CR-7380	0		STATUS	Initial Diagnosis	stage III	stage IVb	7th	m0	n0	t3		n0	t4b				
+TCGA-CR-7382	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t2	m0	n2c	t2				
+TCGA-CR-7383	0		STATUS	Initial Diagnosis	stage I	stage I	6th	m0	n0	t1	m0	n0	t1				
+TCGA-CR-7385	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t2	m0	nx	t1				
+TCGA-CR-7386	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4a	m0	n2c	t4a				
+TCGA-CR-7388	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2	t2		nx	tx				
+TCGA-CR-7389	0		STATUS	Initial Diagnosis	stage III		6th	m0	n1	t2		nx	tx				
+TCGA-CR-7390	0		STATUS	Initial Diagnosis	stage III	stage IVa	6th	m0	n0	t3	m0	n0	t4a				
+TCGA-CR-7391	0		STATUS	Initial Diagnosis	stage I	stage I	6th	m0	n0	t1	m0	n0	t1				
+TCGA-CR-7392	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t3	m0	n2b	t3				
+TCGA-CR-7393	0		STATUS	Initial Diagnosis	stage I	stage III	6th	m0	n0	t1	m0	n1	t1				
+TCGA-CR-7394	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t3	m0	n0	t4a				
+TCGA-CR-7395	0		STATUS	Initial Diagnosis	stage II	stage II	6th	m0	n0	t2	m0	n0	t2				
+TCGA-CR-7397	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	m0	n2b	t3				
+TCGA-CR-7398	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CR-7399	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t4a	m0	n2c	t3				
+TCGA-CR-7401	0		STATUS	Initial Diagnosis	stage I	stage I	6th	m0	n0	t1	m0	n0	t1				
+TCGA-CR-7402	0		STATUS	Initial Diagnosis	stage III		6th	m0	n0	t3		nx	tx				
+TCGA-CR-7404	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t3		nx	tx				
+TCGA-CV-5430	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2a	t4a				
+TCGA-CV-5431	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t3		n2c	t3				
+TCGA-CV-5432	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-CV-5434	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2b	t4a				
+TCGA-CV-5435	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n2b	t4a				
+TCGA-CV-5436	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n2b	t3				
+TCGA-CV-5439	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2		n2b	t3				
+TCGA-CV-5440	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2b	t4a				
+TCGA-CV-5441	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2b	t4a				
+TCGA-CV-5442	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2b	t4a				
+TCGA-CV-5443	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t3		n0	t3				
+TCGA-CV-5444	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n1	t4a				
+TCGA-CV-5966	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n1	t4a				
+TCGA-CV-5970	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2b	t4a				
+TCGA-CV-5971	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2		n2a	t4a				
+TCGA-CV-5973	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n1	t3				
+TCGA-CV-5976	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3		n2b	t4a				
+TCGA-CV-5977	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3		n2b	t3				
+TCGA-CV-5978	0		STATUS	Initial Diagnosis	stage IVb	stage IVb	7th	m0	n3	t4a		n3	t4a				
+TCGA-CV-5979	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3		n2b	t2				
+TCGA-CV-6003	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2		n1	t2				
+TCGA-CV-6433	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CV-6436	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n0	t4a				
+TCGA-CV-6441	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-CV-6933	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n0	t4a		n1	t3				
+TCGA-CV-6934	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3		n2b	t3				
+TCGA-CV-6935	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n2c	t3				
+TCGA-CV-6936	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2c	t4a				
+TCGA-CV-6937	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CV-6938	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-6939	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2b	t4a				
+TCGA-CV-6940	0		STATUS	Initial Diagnosis	stage I	stage III	7th	m0	n0	t1		n1	t2				
+TCGA-CV-6941	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-CV-6942	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-6943	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		nx	t3				
+TCGA-CV-6945	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2	t4a				
+TCGA-CV-6948	0		STATUS	Initial Diagnosis	stage IVa	stage IVb	7th	m0	n0	t4a		n3	t4a				
+TCGA-CV-6950	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t3		n2c	t3				
+TCGA-CV-6951	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a		n2c	t4a				
+TCGA-CV-6952	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n2b	t3				
+TCGA-CV-6953	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-CV-6954	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		nx	t4a				
+TCGA-CV-6955	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-6956	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n2c	t4a		n1	t3				
+TCGA-CV-6959	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t3		n0	t3				
+TCGA-CV-6960	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-CV-6961	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CV-6962	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		nx	t4a				
+TCGA-CV-7089	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t4a		n2c	t4a				
+TCGA-CV-7090	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7091	0		STATUS	Initial Diagnosis	stage I	stage I	7th	m0	n0	t1		n0	t1				
+TCGA-CV-7095	0		STATUS	Initial Diagnosis	stage IVa	stage II	7th	m0	n2a	t1		nx	t2				
+TCGA-CV-7097	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n0	t3		nx	t2				
+TCGA-CV-7099	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7100	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2		n1	t2				
+TCGA-CV-7101	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7102	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3		n2	t3				
+TCGA-CV-7103	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2		n2b	t2				
+TCGA-CV-7104	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t2		n2b	t2				
+TCGA-CV-7177	0		STATUS	Initial Diagnosis	stage I	stage II	7th	m0	n0	t1		nx	t2				
+TCGA-CV-7178	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2	t4a				
+TCGA-CV-7180	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7183	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CV-7235	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n0	t3		n0	t2				
+TCGA-CV-7236	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t2		n2c	t3				
+TCGA-CV-7238	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CV-7242	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n0	t3		n0	t2				
+TCGA-CV-7243	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2		n1	t2				
+TCGA-CV-7245	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n0	t4a				
+TCGA-CV-7247	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2		n0	t3				
+TCGA-CV-7248	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a		n2c	t4a				
+TCGA-CV-7250	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n0	t4a				
+TCGA-CV-7252	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n0	t4a				
+TCGA-CV-7253	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2		n0	t4a				
+TCGA-CV-7254	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7255	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2		n0	t4a				
+TCGA-CV-7261	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n0	t4a				
+TCGA-CV-7263	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	nx	t2		nx	t2				
+TCGA-CV-7406	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CV-7407	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7409	0		STATUS	Initial Diagnosis	stage IVb	stage IVb	7th	m0	n3	t4a		n3	t4a				
+TCGA-CV-7410	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2		n1	t2				
+TCGA-CV-7411	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-CV-7413	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-CV-7414	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3		n2b	t4a				
+TCGA-CV-7415	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n2c	t4a				
+TCGA-CV-7416	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a			t4a				
+TCGA-CV-7418	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n2b	t4a				
+TCGA-CV-7421	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		n0	t4a				
+TCGA-CV-7422	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n1	t4a				
+TCGA-CV-7423	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7424	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t4a		n2b	t3				
+TCGA-CV-7425	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		nx	t3				
+TCGA-CV-7427	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7428	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t4a		n2b	t4a				
+TCGA-CV-7429	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n2b	t4a				
+TCGA-CV-7430	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n0	t4a				
+TCGA-CV-7432	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n1	t2		n0	t2				
+TCGA-CV-7433	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2b	t4a				
+TCGA-CV-7434	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n1	t4a				
+TCGA-CV-7435	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n2b	t3				
+TCGA-CV-7437	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7438	0		STATUS	Initial Diagnosis	stage II	stage I	7th	m0	n0	t2		nx	t1				
+TCGA-CV-7440	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		nx	t2				
+TCGA-CV-7446	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2		n2b	t2				
+TCGA-CV-7568	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a		nx	t4a				
+TCGA-CV-A45O	0		STATUS	Initial Diagnosis	stage III		7th	m0	n0	t3							
+TCGA-CV-A45P	0		STATUS	Initial Diagnosis	stage II	stage I	5th	m0	n0	t2	m0	n0	t1				
+TCGA-CV-A45Q	0		STATUS	Initial Diagnosis	stage IVc		7th	m0	n1	t4a							
+TCGA-CV-A45R	0		STATUS	Initial Diagnosis	stage III	stage III	4th	m0	n1	t3	m0	n1	t2				
+TCGA-CV-A45T	0		STATUS	Initial Diagnosis	stage II	stage II	5th	m0	n0	t2	m0	n0	t1				
+TCGA-CV-A45U	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	5th	m0	n0	t4	m0	n2b	t4				
+TCGA-CV-A45V	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	5th	m0	n0	t4	m0	n0	t4				
+TCGA-CV-A45W	0		STATUS	Initial Diagnosis	stage III	stage II	5th	m0	n0	t3	m0	n0	t2				
+TCGA-CV-A45X	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	5th	m0	n1	t4a	m0	n2b	t2				
+TCGA-CV-A45Y	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	5th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CV-A45Z	0		STATUS	Initial Diagnosis	stage II	stage II	5th	m0	n0	t2	m0	n0	t1				
+TCGA-CV-A460	0		STATUS	Initial Diagnosis	stage IVa	stage II	5th	m0	n2b	t3	m0	n2	t1				
+TCGA-CV-A461	0		STATUS	Initial Diagnosis	stage III		6th	m0	n0	t3							
+TCGA-CV-A463	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CV-A464	0		STATUS	Initial Diagnosis	stage IVa	stage III	6th	m0	n0	t4a	m0	n0	t3				
+TCGA-CV-A465	0		STATUS	Initial Diagnosis	stage II	stage III	6th	m0	n0	t2	m0	n0	t3				
+TCGA-CV-A468	0		STATUS	Initial Diagnosis	stage III	stage IVa	5th	m0	n2b	t3	m0	n2a	t4a				
+TCGA-CV-A6JD	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n0	t4a							
+TCGA-CV-A6JE	0		STATUS	Initial Diagnosis	stage II		7th	m0	n0	t2							
+TCGA-CV-A6JM	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n0	t4a							
+TCGA-CV-A6JN	0		STATUS	Initial Diagnosis	stage II		7th	m0	n0	t2							
+TCGA-CV-A6JO	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4	m0	n2c	t3				
+TCGA-CV-A6JT	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-CV-A6JU	0		STATUS	Initial Diagnosis	stage IVa	stage IVb	7th	m0	n0	t4a	m0	n0	t4b				
+TCGA-CV-A6JY	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CV-A6JZ	0		STATUS	Initial Diagnosis	stage IVa	stage II	7th	m0	n0	t4a	m0	n0	t2				
+TCGA-CV-A6K0	0		STATUS	Initial Diagnosis	stage II	stage I	7th	m0	n0	t2	m0	n0	t1				
+TCGA-CV-A6K1	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-CV-A6K2	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2	m0	n0	t4				
+TCGA-CX-7085	0		STATUS	Initial Diagnosis	stage III	stage I	7th	m0	n0	t3		n0	t1				
+TCGA-CX-7086	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n2c	t4a		n1	t3				
+TCGA-CX-7219	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2c	t4a		n2c	t4a				
+TCGA-CX-A4AQ	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2a	t1	m0	n2b	t2				
+TCGA-D6-6515	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-D6-6516	0		STATUS	Initial Diagnosis	stage III	stage I	7th	m0	n1	t1		n0	t1				
+TCGA-D6-6517	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3		n0	t3				
+TCGA-D6-6823	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n1	t3		n0	t2				
+TCGA-D6-6824	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a		n0	t4a				
+TCGA-D6-6825	0		STATUS	Initial Diagnosis	stage III	stage I	7th	m0	n0	t3		n0	t1				
+TCGA-D6-6826	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t4a		n2b	t4a				
+TCGA-D6-6827	0		STATUS	Initial Diagnosis	stage III	stage I	7th	m0	n1	t1		n0	t1				
+TCGA-D6-8568	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-D6-8569	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-D6-A4Z9	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t2	m0	n2	t2				
+TCGA-D6-A4ZB	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3	m0	n0	t3				
+TCGA-D6-A6EK	0		STATUS	Initial Diagnosis	stage IVa	stage III	7th	m0	n1	t4	m0	n1	t2				
+TCGA-D6-A6EM	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t2	m0	n1	t2				
+TCGA-D6-A6EN	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3	m0	n1	t2				
+TCGA-D6-A6EO	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-D6-A6EP	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3	m0	n0	t3				
+TCGA-D6-A6EQ	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a	m0	n1	t4a				
+TCGA-D6-A6ES	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a	m0	n0	t4a				
+TCGA-D6-A74Q	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-DQ-5624	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n1	t4a		nx	tx				
+TCGA-DQ-5625	0		STATUS	Initial Diagnosis	stage II		6th	m0	n0	t2		nx	tx				
+TCGA-DQ-5629	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2c	t4a		nx	tx				
+TCGA-DQ-5630	0		STATUS	Initial Diagnosis	stage III		6th	m0	n1	t3		nx	tx				
+TCGA-DQ-5631	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t3		nx	tx				
+TCGA-DQ-7588	0		STATUS	Initial Diagnosis	stage III		7th	m0	n1	t2		nx	tx				
+TCGA-DQ-7589	0		STATUS	Initial Diagnosis	stage IVc		7th	m1	n2c	t2		nx	tx				
+TCGA-DQ-7590	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t1		nx	tx				
+TCGA-DQ-7591	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t4a		nx	tx				
+TCGA-DQ-7592	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t4a		nx	tx				
+TCGA-DQ-7593	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n1	t4a		nx	tx				
+TCGA-DQ-7594	0		STATUS	Initial Diagnosis	stage IVb		7th	m0	n3	t4a		nx	tx				
+TCGA-DQ-7595	0		STATUS	Initial Diagnosis	stage II		7th	m0	n0	t2		nx	tx				
+TCGA-DQ-7596	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2a	t2							
+TCGA-F7-7848	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a	m0	n1	t4a				
+TCGA-F7-8298	0		STATUS	Initial Diagnosis	stage I	stage I	7th	m0	n0	t1	m0	n0	t1				
+TCGA-F7-8489	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-F7-A50G	0		STATUS	Initial Diagnosis		stage III	7th				m0	n1	t3				
+TCGA-F7-A50I	0		STATUS	Initial Diagnosis		stage IVa	7th				m0	n0	t4a				
+TCGA-F7-A50J	0		STATUS	Initial Diagnosis		stage III	7th				m0	n0	t3				
+TCGA-F7-A61S	0		STATUS	Initial Diagnosis		stage III	7th	mx	nx	tx	m0	n0	t3				
+TCGA-F7-A61V	0		STATUS	Initial Diagnosis		stage II	7th	mx	nx	tx	m0	n0	t2				
+TCGA-F7-A61W	0		STATUS	Initial Diagnosis		stage IVa	7th	mx	nx	tx	m0	n2b	t2				
+TCGA-F7-A620	0		STATUS	Initial Diagnosis		stage III	7th	mx	nx	tx	m0	n1	t3				
+TCGA-F7-A622	0		STATUS	Initial Diagnosis		stage III	7th	mx	nx	tx	m0	nx	t3				
+TCGA-F7-A623	0		STATUS	Initial Diagnosis		stage IVa	7th	mx	nx	tx	m0	n2b	t1				
+TCGA-F7-A624	0		STATUS	Initial Diagnosis		stage II	7th	mx	nx	tx	m0	nx	t2				
+TCGA-H7-7774	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n0	t4a				
+TCGA-H7-8501	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t4a	m0	n1	t4a				
+TCGA-H7-8502	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a	m0	n2b	t4a				
+TCGA-H7-A6C4	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3	m0	n2b	t2				
+TCGA-H7-A6C5	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n1	t3	m0	n0	t2				
+TCGA-H7-A76A	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t2	mx	n2b	tx				
+TCGA-HD-7229	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	nx	t4a		n0	t4a				
+TCGA-HD-7753	0		STATUS	Initial Diagnosis	stage II	stage I	7th	m0	n0	t2		n0	t1				
+TCGA-HD-7754	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2		n2b	t2				
+TCGA-HD-7831	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3		n2	t2				
+TCGA-HD-7832	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t4a		n0	t4a				
+TCGA-HD-7917	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-HD-8224	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3	m0	n2c	t3				
+TCGA-HD-8314	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t1		n1	t1				
+TCGA-HD-8634	0		STATUS	Initial Diagnosis	stage I	stage I	7th	m0	nx	t1	mx	n0	t1				
+TCGA-HD-8635	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n1	t1	mx	n1	t1				
+TCGA-HD-A4C1	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2	t3	mx	n2b	t4a				
+TCGA-HD-A633	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4	mx	n0	t4a				
+TCGA-HD-A634	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3	mx	n2b	t3				
+TCGA-HD-A6HZ	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	mx	n1	t2				
+TCGA-HD-A6I0	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	nx	t3	mx	n1	t4a				
+TCGA-HL-7533	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t2							
+TCGA-IQ-7630	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n0	t3	m0	n0	t2				
+TCGA-IQ-7631	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-IQ-7632	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-IQ-A61E	0		STATUS	Initial Diagnosis	stage III	stage III	7th	mx	n0	t3	mx	n0	t3				
+TCGA-IQ-A61G	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	mx	n2c	t4a	mx	n2c	t4a				
+TCGA-IQ-A61H	0		STATUS	Initial Diagnosis	stage II	stage II	7th	mx	n0	t2	mx	n0	t2				
+TCGA-IQ-A61I	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t1	m0	n2b	t1				
+TCGA-IQ-A61J	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2	m0	n2b	t2				
+TCGA-IQ-A61K	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	m0	n2b	t3				
+TCGA-IQ-A61L	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-IQ-A61O	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	mx	n2b	t2	mx	n2b	t2				
+TCGA-IQ-A6SG	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3	m0	n0	t3				
+TCGA-IQ-A6SH	0		STATUS	Initial Diagnosis	stage IVc	stage III	7th	m1	n1	t2	m0	n1	t2				
+TCGA-KU-A66S	0		STATUS	Initial Diagnosis	stage III	stage III	7th	mx	n1	t2	mx	n1	t1				
+TCGA-KU-A66T	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4	mx	n0	t4				
+TCGA-KU-A6H7	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t2	m0	n2a	t2				
+TCGA-KU-A6H8	0		STATUS	Initial Diagnosis	stage I	stage IVa	7th	m0	n0	t1	m0	n2b	t2				
+TCGA-MT-A51W	0		STATUS	Initial Diagnosis	stage I	stage I	7th	m0	nx	t1	m0	n0	t1				
+TCGA-MT-A51X	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t1	m0	n2b	t1				
+TCGA-MT-A67A	0		STATUS	Initial Diagnosis	stage I	stage I	7th	m0	n0	t1	mx	n0	t1				
+TCGA-MT-A67D	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-MT-A67F	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	mx	n0	t4	mx	n0	t4				
+TCGA-MT-A67G	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	mx	n2b	t1	mx	n2b	t1				
+TCGA-MT-A7BN	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t2							
+TCGA-MZ-A5BI	0		STATUS	Initial Diagnosis	stage IVa		6th	m0	n2b	t2							
+TCGA-MZ-A6I9	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t4a							
+TCGA-MZ-A7D7	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	mx	n2b	t3				
+TCGA-P3-A5Q5	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2	tx	mx	n2	t2				
+TCGA-P3-A5Q6	0		STATUS	Initial Diagnosis	stage III	stage IVa	6th	m0	n0	t3	mx	n2b	t4a				
+TCGA-P3-A5QA	0		STATUS	Initial Diagnosis	stage II	stage I	6th	m0	n0	t2	mx	nx	t1				
+TCGA-P3-A5QE	0		STATUS	Initial Diagnosis	stage III	stage III	6th	m0	n1	t1	mx	n1	t2				
+TCGA-P3-A5QF	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t4	mx	n2b	t4				
+TCGA-P3-A6SW	0		STATUS	Initial Diagnosis	stage IVa	stage IVb	6th	m0	n2b	t4	mx	n3	t3				
+TCGA-P3-A6SX	0		STATUS	Initial Diagnosis	stage IVa	stage III	6th	m0	n0	t4	mx	n1	t2				
+TCGA-P3-A6T0	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n2b	t4	mx	n0	t4a				
+TCGA-P3-A6T2	0		STATUS	Initial Diagnosis	stage II	stage IVa	6th	m0	n0	t2	mx	n2b	t3				
+TCGA-P3-A6T3	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4	mx	n2	t3				
+TCGA-P3-A6T4	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n1	t4	mx	n1	t4a				
+TCGA-P3-A6T5	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4	mx	n0	t4a				
+TCGA-P3-A6T6	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4	mx	nx	t4a				
+TCGA-P3-A6T7	0		STATUS	Initial Diagnosis	stage III	stage IVa	6th	m0	n1	t3	mx	n2b	t3				
+TCGA-P3-A6T8	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	mx	n2	t4a				
+TCGA-QK-A64Z	0		STATUS	Initial Diagnosis	stage II	stage IVa	7th	m0	n0	t2	mx	nx	t4				
+TCGA-QK-A652	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	mx	n1	t1				
+TCGA-QK-A6IF	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t1							
+TCGA-QK-A6IG	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	m0	n1	t2				
+TCGA-QK-A6IH	0		STATUS	Initial Diagnosis	stage IVa	stage IVb	7th	m0	n1	t4a	m0	n2b	t4b				
+TCGA-QK-A6II	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n0	t3	m0	n2c	t4a				
+TCGA-QK-A6IJ	0		STATUS	Initial Diagnosis	stage II	stage III	7th	m0	n0	t2	m0	n1	t2				
+TCGA-QK-A6V9	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	nx	t2				
+TCGA-QK-A6VB	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-QK-A6VC	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	m0	n1	t4a				
+TCGA-QK-A8Z7	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	m0	n2c	t4a				
+TCGA-QK-A8Z8	0		STATUS	Initial Diagnosis	stage IVc	stage IVc	7th	m1	n1	t3	m1	n1	t3				
+TCGA-QK-A8Z9	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a	m0	n2b	t4a				
+TCGA-QK-A8ZA	0		STATUS	Initial Diagnosis	stage IVa		7th	mx	n2b	t2	mx	n2b	t2				
+TCGA-QK-A8ZB	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-QK-AA3J	0		STATUS	Initial Diagnosis	stage I	stage I	7th	m0	n0	t1	m0	n0	t1				
+TCGA-QK-AA3K	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	mx	n2b	t3	mx	n2b	t3				
+TCGA-RS-A6TO	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4	m0	n2c	t4				
+TCGA-RS-A6TP	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2	m0	n0	t2				
+TCGA-T2-A6WX	0		STATUS	Initial Diagnosis	stage III		7th	m0	n0	t3							
+TCGA-T2-A6WZ	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2b	t3		n2b	t3				
+TCGA-T2-A6X0	0		STATUS	Initial Diagnosis	stage IVa		7th	m0	n2a	t1			tx				
+TCGA-T2-A6X2	0		STATUS	Initial Diagnosis	stage III	stage III	7th	m0	n0	t3	mx	n0	t3				
+TCGA-T3-A92M	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	mx	n2c	t4a				
+TCGA-T3-A92N	0		STATUS	Initial Diagnosis	stage IVc	stage IVa	7th	m1	n1	t1	mx	n2c	t2				
+TCGA-TN-A7HI	0		STATUS	Initial Diagnosis	stage I	stage IVa	7th	m0	n0	t1	m0	n2b	t2				
+TCGA-TN-A7HJ	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	nx	t3	m0	n2b	t4a				
+TCGA-TN-A7HL	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	nx	t4a	m0	n2b	t3				
+TCGA-UF-A718	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-UF-A719	0		STATUS	Initial Diagnosis	stage III	stage II	7th	m0	n0	t3	m0	n0	t2				
+TCGA-UF-A71A	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2a	t3	m0	n2c	t4a				
+TCGA-UF-A71B	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a	m0	n0	t4				
+TCGA-UF-A71D	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a	m0	n0	t4a				
+TCGA-UF-A71E	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4	m0	n0	t4a				
+TCGA-UF-A7J9	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-UF-A7JA	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n1	t4a	m0	n1	t4a				
+TCGA-UF-A7JC	0		STATUS	Initial Diagnosis	stage III	stage IVa	7th	m0	n1	t3	m0	n2b	t3				
+TCGA-UF-A7JD	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n2b	t4				
+TCGA-UF-A7JF	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t4a	m0	n2a	t4a				
+TCGA-UF-A7JH	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-UF-A7JJ	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n0	t4a				
+TCGA-UF-A7JK	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n0	t4a	m0	n2b	t4a				
+TCGA-UF-A7JO	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-UF-A7JS	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2b	t3	m0	n2b	t4a				
+TCGA-UF-A7JT	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	6th	m0	n0	t4a	m0	n0	t4a				
+TCGA-UF-A7JV	0		STATUS	Initial Diagnosis	stage IVa	stage IVa	7th	m0	n2c	t4a	m0	n2b	t4a				
+TCGA-UP-A6WW	0		STATUS	Initial Diagnosis	stage IVa		7th	mx	n2c	t2							
+TCGA-WA-A7GZ	0		STATUS	Initial Diagnosis	stage II		7th	m0	n0	t2		n0	t2				
+TCGA-WA-A7H4	0		STATUS	Initial Diagnosis	stage II	stage II	7th	m0	n0	t2		n0	t2				
+TCGA-BA-A4IF	463		STATUS	New Primary Tumor													
+TCGA-BA-A4II	197		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-BA-A4II	918		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-BA-A6D8	849		STATUS	Distant Metastasis										Oral Cavity			
+TCGA-BA-A6DB	208		STATUS	Locoregional Disease										Cervical Lymph Nodes			
+TCGA-BA-A6DD	96		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-BA-A6DI	266		STATUS	Progression Of Disease										Larynx			
+TCGA-BA-A6DJ	240		STATUS	Distant Metastasis													
+TCGA-BB-4227	85		STATUS	Locoregional Recurrence										Hypopharynx			
+TCGA-BB-7871	428		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-BB-8601	440		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-BB-8601	624		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-BB-A5HY	230		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-BB-A5HZ	438		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-BB-A6UO	212		STATUS	Distant Metastasis													
+TCGA-CN-4739	1302		STATUS	Locoregional Recurrence										Oropharynx			
+TCGA-CN-4741	1716		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-CN-4741	2168		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-5361	2062		STATUS	New Primary Tumor													
+TCGA-CN-5374	1369		STATUS	Distant Metastasis													
+TCGA-CN-6010	540		STATUS	New Primary Tumor													
+TCGA-CN-6013	364		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-6013	615		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-6989	576		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-6989	781		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-6989	889		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-6996	447		STATUS	Locoregional Recurrence													
+TCGA-CN-A49A	344		STATUS	Distant Metastasis													
+TCGA-CN-A49A	344		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-A49A	371		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CN-A498	186		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-CN-A498	186		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CN-A498	326		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-CN-A498	553		STATUS	Locoregional Recurrence													
+TCGA-CQ-7063	1160		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-CQ-7068	1148		STATUS	New Primary Tumor										Oral Cavity			
+TCGA-CQ-A4C9	287		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-CQ-A4C9	686		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CQ-A4C9	707		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CQ-A4CG	350		STATUS	Distant Metastasis													
+TCGA-CQ-A4CH	354		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CQ-A4CI	517		STATUS	Distant Metastasis													
+TCGA-CR-6491	499		STATUS	New Primary Tumor										Distant Metastasis			
+TCGA-CR-6493	247		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-6441	95		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-6936	157		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-6950	258		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-6953	1521		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-6959	103		STATUS	Locoregional Recurrence													
+TCGA-CV-7250	111		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CV-7418	494		STATUS	Locoregional Recurrence										Hypopharynx			
+TCGA-CV-7422	733		STATUS	Locoregional Recurrence										Larynx			
+TCGA-CV-7427	3282		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-7433	445		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CV-7433	584		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-CV-A6JM	107		STATUS	Locoregional Recurrence										Oropharynx			
+TCGA-CV-A6JO	127		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CV-A6JZ	393		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CV-A6JZ	393		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-A6K0	146		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CV-A6K1	401		STATUS	New Primary Tumor										Oral Cavity			
+TCGA-CV-A6K2	134		STATUS	Locoregional Recurrence													
+TCGA-CV-A6K2	134		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-CV-A45P	639		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CV-A45P	639		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-CV-A45U	1064		STATUS	Distant Metastasis													
+TCGA-CV-A460	1425		STATUS	New Primary Tumor													
+TCGA-CV-A464	28		STATUS	Locoregional Disease													
+TCGA-CX-7085	92		STATUS	Locoregional Recurrence										Oropharynx			
+TCGA-CX-7085	308		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-D6-A6EM	232		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-DQ-5625	1058		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-DQ-7594	1084		STATUS	New Primary Tumor										Oral Cavity			
+TCGA-DQ-7596	137		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-F7-A61S	213		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-H7-7774	252		STATUS	New Primary Tumor										Oral Cavity			
+TCGA-H7-A6C4	235		STATUS	Locoregional Recurrence										Distant Metastasis			
+TCGA-HD-7229	162		STATUS	Locoregional Recurrence										Larynx			
+TCGA-HD-7831	667		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-HD-8224	171		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-HD-A633	419		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-IQ-A61G	249		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-IQ-A61L	156		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-IQ-A61L	156		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-KU-A6H8	110		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-KU-A66S	389		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-KU-A66T	552		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-MT-A7BN	179		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-MZ-A6I9	246		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-MZ-A6I9	351		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-MZ-A6I9	481		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-MZ-A6I9	483		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-MZ-A7D7	339		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-P3-A5Q6	280		STATUS	Distant Metastasis													
+TCGA-P3-A5Q6	372		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-P3-A5QA	1601		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-P3-A5QF	140		STATUS	Distant Metastasis													
+TCGA-P3-A6T0	365		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-P3-A6T3	242		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-P3-A6T5	335		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-P3-A6T5	577		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-P3-A6T6	273		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-P3-A6T6	273		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-QK-A6IF	502		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-QK-A6IG	142		STATUS	Locoregional Disease										Cervical Lymph Nodes			
+TCGA-QK-A6IG	169		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-QK-A6IH	228		STATUS	Distant Metastasis													
+TCGA-QK-A6IH	248		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-QK-A6II	176		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-QK-A6II	176		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-QK-A6VB	613		STATUS	New Primary Tumor													
+TCGA-QK-A8Z9	205		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-QK-A64Z	553		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-RS-A6TO	338		STATUS	Locoregional Recurrence										Oral Cavity			
+TCGA-T2-A6WZ	229		STATUS	Distant Metastasis													
+TCGA-T2-A6WZ	229		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-T3-A92M	417		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-T3-A92N	46		STATUS	Distant Metastasis										Distant Metastasis			
+TCGA-UF-A7JC	229		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-UF-A7JK	341		STATUS	Progression Of Disease										Larynx			
+TCGA-UF-A7JO	525		STATUS	Locoregional Disease										Oral Cavity			
+TCGA-UF-A7JS	519		STATUS	Locoregional Recurrence										Cervical Lymph Nodes			
+TCGA-UF-A7JV	55		STATUS	Progression Of Disease										Oropharynx			
+TCGA-BA-4074	396		STATUS	Distant Metastasis													
+TCGA-BA-4076	286		STATUS	Progression Of Disease										Larynx			
+TCGA-BA-5149	389		STATUS	Distant Metastasis													
+TCGA-BA-5153	1522		STATUS	Distant Metastasis													
+TCGA-BA-5555	248		STATUS	Progression Of Disease										Oropharynx			
+TCGA-BA-5559	1614		STATUS	Progression Of Disease										Oropharynx			
+TCGA-BA-6868	344		STATUS	Distant Metastasis													
+TCGA-BA-6873	66		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-BB-4224	175		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CN-4726	79		STATUS	Distant Metastasis													
+TCGA-CN-4736	209		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CN-5358	145		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CN-5359	356		STATUS	Distant Metastasis													
+TCGA-CN-5363	53		STATUS	Distant Metastasis													
+TCGA-CN-5366	276		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CN-5370	123		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CN-6022	101		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CN-6024	156		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CN-6997	279		STATUS	Distant Metastasis													
+TCGA-CN-6998	244		STATUS	Progression Of Disease										Oropharynx			
+TCGA-CQ-5325	204		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CQ-5333	176		STATUS	Progression Of Disease										Oropharynx			
+TCGA-CQ-5334	50		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CQ-6219	195		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CQ-6225	180		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CQ-6228	273		STATUS	Distant Metastasis													
+TCGA-CQ-7065	230		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CR-5248	936		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CR-6471	498		STATUS	Progression Of Disease										Oropharynx			
+TCGA-CR-6474	220		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CR-7380	561		STATUS	Distant Metastasis													
+TCGA-CR-7382	614		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-CR-7383	454		STATUS	Progression Of Disease										Oropharynx			
+TCGA-CR-7386	1028		STATUS	Distant Metastasis													
+TCGA-CR-7388	334		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-CR-7404	234		STATUS	Progression Of Disease										Oropharynx			
+TCGA-CV-5430	783		STATUS	Distant Metastasis													
+TCGA-CV-5434	1859		STATUS	Distant Metastasis													
+TCGA-CV-5435	284		STATUS	Distant Metastasis													
+TCGA-CV-5439	211		STATUS	Progression Of Disease										Oropharynx			
+TCGA-D6-6515	195		STATUS	Progression Of Disease										Cervical Lymph Nodes			
+TCGA-D6-6517	161		STATUS	Distant Metastasis													
+TCGA-DQ-5631	447		STATUS	Distant Metastasis													
+TCGA-DQ-7588	79		STATUS	Progression Of Disease										Oral Cavity			
+TCGA-4P-AA8J	102		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-5151	722		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-5152	1288		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-5555	520		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-5556	725		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-5557	623		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-5558	1995		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-6869	644		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-6873	122		STATUS	Last Follow Up											With Tumor	Progressive Disease	Alive
+TCGA-BA-7269	1273		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-A4IF	895		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-A4IG	855		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-A4IH	622		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-A4II	918		STATUS	Last Follow Up											With Tumor		Alive
+TCGA-BA-A6D8	850		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-BA-A6DA	351		STATUS	Last Follow Up													Alive
+TCGA-BA-A6DB	216		STATUS	Last Follow Up													
+TCGA-BA-A6DE	440		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-A6DL	623		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BA-A8YP	499		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-4217	187		STATUS	Last Follow Up											With Tumor	Partial Remission/Response	Alive
+TCGA-BB-4223	3221		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-4224	278		STATUS	Last Follow Up													
+TCGA-BB-4225	146		STATUS	Last Follow Up											With Tumor	Partial Remission/Response	Alive
+TCGA-BB-4227	134		STATUS	Last Follow Up											With Tumor	Progressive Disease	Alive
+TCGA-BB-4228	559		STATUS	Last Follow Up													Alive
+TCGA-BB-7861	682		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-7862	1117		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-7863	1025		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-7864	1527		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-7866	1368		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-7870	2016		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-7871	750		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-BB-7872	1168		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-8596	2161		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-8601	624		STATUS	Last Follow Up												Progressive Disease	Alive
+TCGA-BB-A5HU	782		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-BB-A5HZ	827		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-BB-A6UM	393		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-C9-A480	386		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4722	1483		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4723	1699		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4725	1157		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4727	1560		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4728	1724		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4729	392		STATUS	Last Follow Up													Alive
+TCGA-CN-4730	817		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4733	1586		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4734	1690		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4735	1737		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4737	625		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-4741	2239		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CN-5355	1278		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-5356	1409		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-5360	2169		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-5373	1584		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6010	1523		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6011	933		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6012	1460		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6016	1443		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6019	1038		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6023	1584		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6988	318		STATUS	Last Follow Up													Alive
+TCGA-CN-6992	1066		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-6994	1183		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A6UY	713		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A6V1	603		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A6V3	742		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A6V6	635		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A6V7	594		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A49B	904		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A49C	645		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A63T	225		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A63U	964		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A63V	679		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A63Y	504		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A497	1065		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A499	717		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CN-A641	367		STATUS	Last Follow Up													Alive
+TCGA-CQ-5323	1466		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-5324	1593		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-5327	1660		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-5329	2143		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-5330	1897		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-5331	1399		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-6218	1253		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-6222	2016		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-6223	1428		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-6224	1721		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-6229	1179		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-7063	2133		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-7064	1973		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-7065	1628		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-7067	509		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-7068	1309		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-CQ-7069	1274		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-7071	1311		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-7072	2359		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-CQ-A4C6	1353		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-A4C9	707		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-CQ-A4CB	893		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-A4CD	1022		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-A4CE	897		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CQ-A4CI	950		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-CR-5243	2562		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-5247	358		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-5248	1663		STATUS	Last Follow Up													Alive
+TCGA-CR-5249	1152		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-5250	799		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6467	1777		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6470	1521		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6472	1050		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-CR-6473	1125		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6477	514		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6480	362		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6481	311		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6482	345		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6484	354		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6487	234		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6488	379		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-6491	693		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-CR-6492	479		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7364	1435		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7365	1191		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7367	1440		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7368	1245		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7370	105		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7372	759		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7373	889		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7374	30		STATUS	Last Follow Up											With Tumor		Alive
+TCGA-CR-7376	972		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7379	1036		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7382	796		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7385	997		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7386	1430		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-CR-7389	392		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7390	1508		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7391	913		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7392	1425		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7393	993		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7394	1346		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7395	930		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7397	754		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7398	156		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7399	181		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7401	1077		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7402	911		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CR-7404	1472		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-CV-5430	4241		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-5432	3930		STATUS	Last Follow Up													Alive
+TCGA-CV-5440	3270		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-5441	2886		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-5442	2327		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-5443	2784		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CV-5444	2437		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CV-5971	701		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CV-5973	2641		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-5976	1478		STATUS	Last Follow Up													
+TCGA-CV-5977	1840		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-5979	1315		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-6003	1665		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CV-6433	641		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-CV-6436	1899		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CV-6942	4282		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-7090	5252		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-7091	3381		STATUS	Last Follow Up													
+TCGA-CV-7183	3981		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-7235	2347		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-7238	2727		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-7242	1095		STATUS	Last Follow Up													
+TCGA-CV-7243	954		STATUS	Last Follow Up													
+TCGA-CV-7245	797		STATUS	Last Follow Up													
+TCGA-CV-7261	1512		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CV-A6JE	1075		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-A6JN	906		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-A6JT	852		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-A6JU	110		STATUS	Last Follow Up													
+TCGA-CV-A6JY	646		STATUS	Last Follow Up													
+TCGA-CV-A6JZ	714		STATUS	Last Follow Up													Alive
+TCGA-CV-A6K0	606		STATUS	Last Follow Up													
+TCGA-CV-A6K1	685		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-A45O	851		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-CV-A45P	639		STATUS	Last Follow Up													Alive
+TCGA-CV-A45R	5480		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CV-A464	1722		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CX-7085	321		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-CX-7086	573		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CX-7219	1045		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-CX-A4AQ	1555		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-6516	773		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-6517	292		STATUS	Last Follow Up											With Tumor	Progressive Disease	Alive
+TCGA-D6-6823	701		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-6824	77		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-D6-6825	491		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-6827	568		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-8568	759		STATUS	Last Follow Up											Tumor Free	Stable Disease	Alive
+TCGA-D6-8569	770		STATUS	Last Follow Up											Tumor Free	Stable Disease	Alive
+TCGA-D6-A4Z9	539		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-A4ZB	376		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-A6EK	875		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-D6-A6EM	232		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-D6-A6EN	687		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-A6EO	759		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-D6-A6EP	424		STATUS	Last Follow Up													
+TCGA-D6-A6EQ	368		STATUS	Last Follow Up													
+TCGA-D6-A6ES	389		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-D6-A74Q	710		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-5624	1778		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-5630	1030		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7589	1409		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7590	1413		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7591	622		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7592	1143		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7593	1224		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7594	1218		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7595	1190		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-DQ-7596	1265		STATUS	Last Follow Up											Tumor Free	Stable Disease	Alive
+TCGA-F7-7848	1131		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-8298	995		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-8489	658		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-A50G	616		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-A50I	92		STATUS	Last Follow Up													
+TCGA-F7-A50J	947		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-A61S	576		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-F7-A61V	759		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-A61W	14		STATUS	Last Follow Up													
+TCGA-F7-A620	543		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-A623	616		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-F7-A624	378		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-H7-7774	407		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-H7-8501	461		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-H7-8502	458		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-H7-A6C4	414		STATUS	Last Follow Up													
+TCGA-H7-A6C5	642		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-H7-A76A	637		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-HD-7229	1027		STATUS	Last Follow Up											With Tumor	Progressive Disease	Alive
+TCGA-HD-7753	866		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-HD-7754	783		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-HD-7831	667		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-HD-7832	836		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-HD-8314	670		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-HD-8635	695		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-HD-A4C1	11		STATUS	Last Follow Up													
+TCGA-HD-A6HZ	111		STATUS	Last Follow Up													
+TCGA-HD-A6I0	210		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-HD-A633	421		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-HL-7533	1057		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-7630	485		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-7631	1172		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-7632	441		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-A6SG	579		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-IQ-A6SH	471		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-A61E	1147		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-A61G	360		STATUS	Last Follow Up												Progressive Disease	Alive
+TCGA-IQ-A61H	1138		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-A61J	1021		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-IQ-A61L	416		STATUS	Last Follow Up											With Tumor	Partial Remission/Response	Alive
+TCGA-KU-A6H7	586		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-KU-A66T	552		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-MT-A7BN	469		STATUS	Last Follow Up											With Tumor	Progressive Disease	Alive
+TCGA-MT-A51W	437		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-MT-A51X	242		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-MT-A67A	914		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-MT-A67D	56		STATUS	Last Follow Up													Alive
+TCGA-MT-A67F	384		STATUS	Last Follow Up											Tumor Free	Stable Disease	Alive
+TCGA-MT-A67G	190		STATUS	Last Follow Up											Tumor Free		Alive
+TCGA-MZ-A7D7	547		STATUS	Last Follow Up											With Tumor	Complete Remission/Response	Alive
+TCGA-P3-A5Q5	910		STATUS	Last Follow Up													
+TCGA-P3-A5QA	2182		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-P3-A5QE	1559		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-P3-A6SW	1120		STATUS	Last Follow Up													
+TCGA-P3-A6T0	578		STATUS	Last Follow Up													
+TCGA-P3-A6T2	2298		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-P3-A6T8	400		STATUS	Last Follow Up													
+TCGA-QK-A6IF	704		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-QK-A6IH	653		STATUS	Last Follow Up											With Tumor	Progressive Disease	Alive
+TCGA-QK-A6IJ	387		STATUS	Last Follow Up													Alive
+TCGA-QK-A6V9	833		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-QK-A6VB	641		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-QK-A6VC	600		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-QK-A8Z7	392		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-QK-A8ZB	542		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-QK-A652	645		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-QK-AA3J	466		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-QK-AA3K	253		STATUS	Last Follow Up													Alive
+TCGA-RS-A6TP	516		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-T2-A6X0	216		STATUS	Last Follow Up													
+TCGA-T2-A6X2	987		STATUS	Last Follow Up													
+TCGA-T3-A92M	417		STATUS	Last Follow Up											With Tumor		Alive
+TCGA-TN-A7HI	412		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-TN-A7HJ	403		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-TN-A7HL	619		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A7J9	1358		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A7JA	2265		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A7JF	1686		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A7JH	896		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A7JJ	549		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A71B	1506		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A71D	1461		STATUS	Last Follow Up												Complete Remission/Response	Alive
+TCGA-UF-A718	1971		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UF-A719	1663		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-UP-A6WW	518		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive
+TCGA-WA-A7H4	443		STATUS	Last Follow Up											Tumor Free	Complete Remission/Response	Alive

data_timeline_treatment.txt

@@ -0,0 +1,776 @@
+PATIENT_ID	START_DATE	STOP_DATE	EVENT_TYPE	TREATMENT_TYPE	TREATMENT_SUBTYPE	AGENT	NUMBER_OF_CYCLES	PRESCRIBED_DOSE	PRESCRIBED_DOSE_UNITS	REGIMEN_NUMBER	REGIMEN_INDICATION	REGIMEN_INDICATION_NOTES	MEASURE_OF_RESPONSE	CLINICAL_TRIAL_DRUG_CLASSIFICATION	ROUTE_OF_ADMINISTRATION	ROUTE_OF_ADMINISTRATION-2	THERAPY_ONGOING	TOTAL_DOSE	TOTAL_DOSE_UNITS	TX_ON_CLINICAL_TRIAL	ANATOMIC_TREATMENT_SITE	COURSE_NUMBER	NUMBER_OF_FRACTIONS	RADIATION_DOSAGE	RADIATION_TREATMENT_ONGOING	RADIATION_TYPE	RADIATION_UNITS	PHARM_REGIMEN	STEM_CELL_TRANSPLANTATION	STEM_CELL_TRANSPLANTATION_TYPE
+TCGA-BA-4074	45	97	Treatment	Chemotherapy		Carboplatin				1	Adjuvant						No													
+TCGA-BA-4074	425	431	Treatment	Radiation Therapy		Radiation 1					Palliative											2	5	2000	No		cgy			
+TCGA-BA-4074	45	97	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-BA-4076	18	64	Treatment	Chemotherapy		Fluorouracil	2			1	Adjuvant						No													
+TCGA-BA-4076	18	64	Treatment	Chemotherapy		Cisplatin	2			1	Adjuvant						No													
+TCGA-BA-4076	18	64	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6800	No		cgy			
+TCGA-BA-4078	51	95	Treatment	Radiation Therapy		Radiation 1					Adjuvant											1			No					
+TCGA-BA-5149	59	80	Treatment	Chemotherapy		Cisplatin	2	100	mg/m2	1	Adjuvant						No													
+TCGA-BA-5149	59	102	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6000	No	External Beam	cgy			
+TCGA-BA-5151	55	69	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6600	No	External Beam	cgy			
+TCGA-BA-5153	41	91	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1			No					
+TCGA-BA-5557	67	109	Treatment	Chemotherapy		Cisplatin	6	30	mg/m2	1	Adjuvant						No													
+TCGA-BA-5557	67	109	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-BA-5558	78	140	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6480	No	External Beam	cgy			
+TCGA-BA-6868	13	48	Treatment	Chemotherapy		Carboplatin	6	2248	mg	1	Adjuvant				IV		No	1746	mg											
+TCGA-BA-6868	13	13	Treatment	Chemotherapy		Cetuximab	1	692	mg	1	Adjuvant				IV		No	519	mg											
+TCGA-BA-6868	69	118	Treatment	Chemotherapy		Cisplatin	3	540	mg	2	Adjuvant				IV		No	515	mg											
+TCGA-BA-6868	14	48	Treatment	Chemotherapy		Paclitaxel	6	1831	mg	1	Adjuvant				IV		No	1419	mg											
+TCGA-BA-6868	70	121	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	35	7000	No	External Beam	cgy			
+TCGA-BA-6869	96	137	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-BA-6870	60	152	Treatment	Chemotherapy		Cisplatin				1	Adjuvant						No													
+TCGA-BA-6870	76	144	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6996	No	External Beam	cgy			
+TCGA-BA-6873	72	118	Treatment	Chemotherapy		Cisplatin	3	100	mg/m2	1	Progression				IV		No	640	mg											
+TCGA-BA-6873	72	122	Treatment	Radiation Therapy		Radiation 1					Progression										Local Recurrence	1		4600	No	External Beam	cgy			
+TCGA-BA-7269	67	118	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-BA-A4IF	25	53	Treatment	Chemotherapy		Cisplatin							complete response				No			Yes										
+TCGA-BA-A4IF	33	75	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	7000	No	External	cgy			
+TCGA-BA-A4IG	79	140	Treatment	Chemotherapy		Cetuximab							complete response				No			No										
+TCGA-BA-A4IG	86	132	Treatment	Radiation Therapy		Radiation 1							complete response								Regional Site		30	6000	No	External	cgy			
+TCGA-BA-A4IH	87	129	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BA-A4IH	88	136	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-BA-A6D8	112	154	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BA-A6D8	107	154	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-BA-A6D8	107	154	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		33	5610	No	External	cgy			
+TCGA-BA-A6DA	68	110	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BA-A6DA	68	112	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-BA-A6DD	96	163	Treatment	Chemotherapy		Cisplatin							clinical progressive disease				No			No										
+TCGA-BA-A6DD	89	133	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		19	3800	No	External	cgy			
+TCGA-BA-A6DF	44	92	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		32	6400	No	External	cgy			
+TCGA-BA-A6DG	58	61	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		2	400	No	External	cgy			
+TCGA-BA-A6DI	18	53	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BA-A6DI	18	62	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		32	6400	No	External	cgy			
+TCGA-BA-A6DJ	105	140	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BA-A6DJ	104	160	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-BA-A6DJ	104	160	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		30	6000	No	External	cgy			
+TCGA-BA-A6DL	21	56	Treatment	Chemotherapy		Carboplatin							complete response				No			Yes										
+TCGA-BA-A6DL	21	56	Treatment	Chemotherapy		Paclitaxel							complete response				No			Yes										
+TCGA-BA-A6DL	21	56	Treatment	Chemotherapy		Lapatinib							complete response				No			Yes										
+TCGA-BA-A8YP	39	100	Treatment	Chemotherapy									complete response				No			No										
+TCGA-BA-A8YP	49	102	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		31	6200	No	External	cgy			
+TCGA-BB-4217	115	121	Treatment	Radiation Therapy		Radiation 1					Adjuvant											1			No					
+TCGA-BB-4223	98	140	Treatment	Chemotherapy		Cisplatin	6	100	mg/m2	1	Adjuvant				IV		No	600	mg/m2											
+TCGA-BB-4223	94	135	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Regional Site	1		6000	No	External Beam	cgy			
+TCGA-BB-4223	136	140	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Primary Tumor Field	2		600	No	External Beam	cgy			
+TCGA-BB-4224	182	202	Treatment	Chemotherapy		Cisplatin	2	75	mg/m2	1	Palliative				IV		No	150	mg/m2											
+TCGA-BB-4224	229	243	Treatment	Chemotherapy		Gemcitabine	2		mg/m2	2	Palliative				IV		No		mg/m2											
+TCGA-BB-4224	2786	2799	Treatment	Chemotherapy		Oxaliplatin	2		mg/m2	2	Palliative				IV		No		mg/m2											
+TCGA-BB-4224	182	202	Treatment	Chemotherapy		Docetaxel	2	75	mg/m2	1	Palliative				IV		No	150	mg/m2											
+TCGA-BB-4224	30	69	Treatment	Radiation Therapy		Radiation 1															Regional Site			5580	No	External Beam	cgy			
+TCGA-BB-4228	26		Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field	1		600	No		cgy			
+TCGA-BB-7861	43	71	Treatment	Chemotherapy									complete response				No			No										
+TCGA-BB-7861	43	71	Treatment	Radiation Therapy		Radiation 1							complete response												No					
+TCGA-BB-7862	92	145	Treatment	Radiation Therapy		Radiation 1							complete response												No					
+TCGA-BB-7864	136	179	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BB-7864	136	179	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000.00	No	External	cgy			
+TCGA-BB-7866	71	116	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BB-7866	70	116	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	7000.00	No	External	gy			
+TCGA-BB-7870	64	119	Treatment	Radiation Therapy		Radiation 1							complete response											6000	No		cgy			
+TCGA-BB-7871	143	185	Treatment	Radiation Therapy		Radiation 1							complete response												No					
+TCGA-BB-7872	112	154	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BB-7872	112	154	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6600.00	No	External	cgy			
+TCGA-BB-A5HU	69	97	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BB-A5HU	68	110	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6600.00	No	External	cgy			
+TCGA-BB-A5HY	84	121	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-BB-A5HY	83	127	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	182	No	External	gy			
+TCGA-BB-A5HY	275	281	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Distant Recurrence		5	2500	No	External	cgy			
+TCGA-BB-A5HZ	94	136	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6300	No	External	cgy			
+TCGA-BB-A6UM	150	181	Treatment	Chemotherapy									complete response				No			No										
+TCGA-BB-A6UM	150	181	Treatment	Radiation Therapy		Radiation 1							complete response												No					
+TCGA-BB-A6UO	105	150	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6600	No	External	cgy			
+TCGA-CN-4726	90	94	Treatment	Chemotherapy		Cisplatin	1	100	mg/m2/wk	1	Recurrence				IV		No													
+TCGA-CN-4726	90	94	Treatment	Radiation Therapy		Radiation 1					Recurrence										Regional Site	2	5	1100	No	External Beam	cgy			
+TCGA-CN-4727	83	143	Treatment	Chemotherapy		Cisplatin			mg/m2/wk	1	Adjuvant				IV		No		mg/m2/wk											
+TCGA-CN-4727	94	143	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1			No	External Beam	cgy			
+TCGA-CN-4728	44	87	Treatment	Chemotherapy		Panitumumab	7	2.5	mg/kg	1	Adjuvant				IV		No		mg/kg											
+TCGA-CN-4728	44	87	Treatment	Chemotherapy		Cisplatin	7	30	mg/m2/wk	1	Adjuvant				IV		No													
+TCGA-CN-4728	44	87	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-4731	273	301	Treatment	Chemotherapy		Cetuximab			mg/m2/wk	1	Recurrence				IV		No		mg/m2/wk											
+TCGA-CN-4731	546	560	Treatment	Chemotherapy		Cetuximab	3	100	mg/ml	1	Recurrence				IV		No	300	mg/ml											
+TCGA-CN-4731	827	869	Treatment	Chemotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-CN-4731	937	958	Treatment	Chemotherapy		Docetaxel							clinical progressive disease				No			Yes										
+TCGA-CN-4731	273	323	Treatment	Radiation Therapy		Radiation 1					Recurrence										Local Recurrence	2	35	7000	No	External Beam	cgy			
+TCGA-CN-4731	538	562	Treatment	Radiation Therapy		Radiation 2					Recurrence										Regional Site	3	5	4400	No	Other	cgy			
+TCGA-CN-4734	73	115	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	5400	No	External Beam	cgy			
+TCGA-CN-4735	46	88	Treatment	Chemotherapy		Panitumumab		2.5	mg/kg	1	Adjuvant				IV		No													
+TCGA-CN-4735	46	88	Treatment	Chemotherapy		Cisplatin	3	30	mg/m2/wk	1	Adjuvant				IV		No													
+TCGA-CN-4735	46	88	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-4736	262	322	Treatment	Chemotherapy		Cisplatin			mg/m2	1	Recurrence				IV		No		mg/m2											
+TCGA-CN-4736	269	322	Treatment	Radiation Therapy		Radiation 1					Recurrence										Regional Site	2	35	7000	No	External Beam	cgy			
+TCGA-CN-4737	43	85	Treatment	Chemotherapy		Cisplatin			mg/ml	1	Adjuvant				IV		No	50	mg/ml											
+TCGA-CN-4737	43	85	Treatment	Chemotherapy		Panitumumab			mg/ml	1	Adjuvant				IV		No	100	mg/ml											
+TCGA-CN-4737	43	85	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-4738	251	280	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		3200	No	External Beam	cgy			
+TCGA-CN-4739	115	161	Treatment	Chemotherapy		Carboplatin			auc		Adjuvant				IV		No		auc											
+TCGA-CN-4739	115	161	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	31	6200	No	External Beam	cgy			
+TCGA-CN-4740	260	276	Treatment	Chemotherapy		Cetuximab			mg/ml	1	Recurrence				IV		No		mg/ml											
+TCGA-CN-4740	757	791	Treatment	Chemotherapy		Everolimus	1		mg/ml	1	Recurrence				IV		No		mg/ml											
+TCGA-CN-4740	266	276	Treatment	Radiation Therapy		Radiation 1					Recurrence										Regional Site	2	5	4400	No	Other	cgy			
+TCGA-CN-4740	98	160	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Primary Tumor Field	1	36	6480	No	External Beam	cgy			
+TCGA-CN-4741	103	163	Treatment	Chemotherapy		Cisplatin			mg	1	Adjuvant				IV		No		mg											
+TCGA-CN-4741	1771	1778	Treatment	Immunotherapy		Cetuximab							complete response				No			No										
+TCGA-CN-4741	103	163	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6600	No	External Beam	cgy			
+TCGA-CN-4741	1771	1780	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		5	4400	No	External	cgy			
+TCGA-CN-4742	168	237	Treatment	Chemotherapy		Cisplatin			auc		Adjuvant				IV		No		auc											
+TCGA-CN-4742	165	237	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	41	7380	No	External Beam	cgy			
+TCGA-CN-5358	223		Treatment	Chemotherapy		Carboplatin			auc	2	Recurrence				IV		Yes		auc											
+TCGA-CN-5358	202		Treatment	Chemotherapy		Cisplatin			auc	1	Recurrence				IV		Yes		auc											
+TCGA-CN-5358	202		Treatment	Radiation Therapy		Radiation 1					Recurrence										Regional Site	2			Yes	External Beam	cgy			
+TCGA-CN-5359	54	79	Treatment	Chemotherapy		Cisplatin		10	mg/ml	1	Adjuvant				IV		No	80	mg/ml											
+TCGA-CN-5359	54	79	Treatment	Chemotherapy		Panitumumab		20	mg/ml	1	Adjuvant				IV		No	160	mg/ml											
+TCGA-CN-5359	53	96	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-5360	80	125	Treatment	Chemotherapy		Cisplatin	3		mg	1	Adjuvant				IV		No		mg											
+TCGA-CN-5360	80	122	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-5364	231	303	Treatment	Chemotherapy		Carboplatin			mg	1	Adjuvant				IV		No		mg											
+TCGA-CN-5364	231	303	Treatment	Chemotherapy		Paclitaxel			mg	1	Adjuvant				IV		No		mg											
+TCGA-CN-5364	231	289	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	35	6640	No	External Beam	cgy			
+TCGA-CN-5366	86	147	Treatment	Chemotherapy					mg	1	Adjuvant				IV		No		mg											
+TCGA-CN-5366	94	151	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	5500	No	External Beam	cgy			
+TCGA-CN-5367	88	139	Treatment	Chemotherapy		Cisplatin			mg	1	Adjuvant				IV		No		mg											
+TCGA-CN-5367	83	139	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6000	No	External Beam	cgy			
+TCGA-CN-5370	142	183	Treatment	Chemotherapy		Cisplatin	3		mg/ml	1	Recurrence				IV		No		mg/ml											
+TCGA-CN-5370	142	183	Treatment	Chemotherapy		Cisplatin	3		mg/ml	3	Recurrence				IV		No		mg/ml											
+TCGA-CN-5370	142	183	Treatment	Chemotherapy		Cisplatin	3		mg/ml	2	Recurrence				IV		No		mg/ml											
+TCGA-CN-5370	144	199	Treatment	Radiation Therapy		Radiation 1					Recurrence										Primary Tumor Field	2	34	6800	No	External Beam	cgy			
+TCGA-CN-5373	66	109	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-5374	112	182	Treatment	Chemotherapy		Cisplatin			mg	1	Adjuvant				INTRAVESICAL		No		mg											
+TCGA-CN-5374	116	187	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	34	7200	No	External Beam	cgy			
+TCGA-CN-6010	50	70	Treatment	Chemotherapy		Cisplatin	2	10	mg/ml	1	Adjuvant				IV		No	10	mg/ml											
+TCGA-CN-6010	47	98	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-6011	109	159	Treatment	Chemotherapy		Cisplatin			mg/ml	1	Adjuvant				IV		No		mg/ml											
+TCGA-CN-6011	102	157	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CN-6012	157	200	Treatment	Chemotherapy		Cisplatin			mg/ml	1	Adjuvant				IV		No		mg/ml											
+TCGA-CN-6012	157	207	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1			No	External Beam	cgy			
+TCGA-CN-6013	103	148	Treatment	Chemotherapy		Cisplatin	3	100	mg/m2	1	Adjuvant				IV		No	100	mg/m2											
+TCGA-CN-6013	103	148	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CN-6016	92	141	Treatment	Chemotherapy		Carboplatin		2	auc	1	Adjuvant				IV		No	2	auc											
+TCGA-CN-6016	93	156	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	39	7020	No	External Beam	cgy			
+TCGA-CN-6017	103	110	Treatment	Chemotherapy		Carboplatin		50	mg/ml	1	Adjuvant				IV		No	50	mg/ml											
+TCGA-CN-6017	75	96	Treatment	Chemotherapy		Cisplatin		10	mg/ml	1	Adjuvant				IV		No	10	mg/ml											
+TCGA-CN-6017	75	117	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CN-6019	56	84	Treatment	Chemotherapy		Cisplatin		10	mg/ml	1	Adjuvant				IV		No	10	mg/ml											
+TCGA-CN-6019	56	91	Treatment	Chemotherapy		Panitumumab		20	mg/ml	1	Adjuvant				IV		No	20	mg/ml											
+TCGA-CN-6019	56	97	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-6020	101	140	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CN-6022	166	185	Treatment	Radiation Therapy		Radiation 1					Progression										Regional Site	2	10	1800	No	External Beam	cgy			
+TCGA-CN-6023	49	99	Treatment	Chemotherapy		Cetuximab			mg/ml	1	Adjuvant				IV		No		mg/ml											
+TCGA-CN-6023	49	99	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	35	6300	No	External Beam	cgy			
+TCGA-CN-6989	73	114	Treatment	Chemotherapy		Carboplatin	4	50	mg/ml	1	Adjuvant				IV		No	200	mg/ml											
+TCGA-CN-6989	791	855	Treatment	Chemotherapy		Gemcitabine							clinical progressive disease				No			No										
+TCGA-CN-6989	889	917	Treatment	Chemotherapy		Methotrexate							clinical progressive disease				No			No										
+TCGA-CN-6989	72	116	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	32	6400	No	External Beam	cgy			
+TCGA-CN-6992	71		Treatment	Chemotherapy		Cisplatin	3	10	mg/ml	1	Adjuvant				IV		Yes	30	mg/ml											
+TCGA-CN-6992	70	140	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CN-6996	70		Treatment	Chemotherapy		Cisplatin	3	10	mg/ml	1	Adjuvant				IV		Yes	30	mg/ml											
+TCGA-CN-6996	378	378	Treatment	Targeted Molecular Therapy		Capecitabine							clinical progressive disease				No			Yes										
+TCGA-CN-6996	378	378	Treatment	Targeted Molecular Therapy		Vorinostat							clinical progressive disease				No			Yes										
+TCGA-CN-6996	418		Treatment	Vaccine		Vaccine Nos							clinical progressive disease				Yes			Yes										
+TCGA-CN-6996	71	119	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CN-6997	59	101	Treatment	Chemotherapy		Cisplatin	3		mg/ml	1	Adjuvant				IV		No		mg/ml											
+TCGA-CN-6997	363		Treatment	Chemotherapy		Cetuximab											Yes			No										
+TCGA-CN-6997	70	113	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6600	No	External Beam	cgy			
+TCGA-CN-6998	64	131	Treatment	Chemotherapy		Cisplatin							clinical progressive disease				No			No										
+TCGA-CN-6998	63	141	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		38	6840	No	External	cgy			
+TCGA-CN-A498	59	101	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CN-A498	480	487	Treatment	Chemotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-CN-A498	674	723	Treatment	Chemotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-CN-A498	744	751	Treatment	Chemotherapy		Carboplatin							clinical progressive disease				No			No										
+TCGA-CN-A498	744	751	Treatment	Chemotherapy		Paclitaxel							clinical progressive disease				No			No										
+TCGA-CN-A498	51	107	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	6440	No	External	cgy			
+TCGA-CN-A498	480	493	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Regional Site		5	44	No	External	gy			
+TCGA-CN-A49A	76	126	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CN-A49A	76	128	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6600	No	External	cgy			
+TCGA-CN-A49A	365	365	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Distant Recurrence		1	1500	No	External	cgy			
+TCGA-CN-A49B	161	213	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6600	No	External	cgy			
+TCGA-CN-A49C	26	78	Treatment	Chemotherapy		Cetuximab							complete response				No			No										
+TCGA-CN-A49C	26	78	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		34	7300	No	External	cgy			
+TCGA-CN-A63T	64	64	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-CN-A63T	64	72	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		5	9	No	External	gy			
+TCGA-CN-A63U	36	86	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			60	No	External	gy			
+TCGA-CN-A63W	69	138	Treatment	Chemotherapy		Panitumumab							complete response				No			Yes										
+TCGA-CN-A63W	69	138	Treatment	Chemotherapy		Cisplatin							complete response				No			Yes										
+TCGA-CN-A63W	69	138	Treatment	Chemotherapy		Carboplatin							complete response				No			Yes										
+TCGA-CN-A63W	69	145	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	66	No	External	gy			
+TCGA-CN-A641	187	239	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-CN-A641	185	239	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CN-A6UY	59	106	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CN-A6UY	59	101	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6900	No	External	cgy			
+TCGA-CN-A6V1	13	34	Treatment	Immunotherapy		Cetuximab							complete response				No			Yes										
+TCGA-CN-A6V3	130	151	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-CN-A6V3	130	178	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-CN-A6V6	74	116	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-CN-A6V6	74	119	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-CN-A6V7	83	104	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-CN-A6V7	83	132	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	7000	No	External	cgy			
+TCGA-CQ-5323	47	83	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	25	5000	No	External Beam	cgy			
+TCGA-CQ-5325	244	276	Treatment	Radiation Therapy		Radiation 1					Recurrence										Primary Tumor Field	1	25	6000	No	External Beam	cgy			
+TCGA-CQ-5326	64	73	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	8	1696	No	External Beam	cgy			
+TCGA-CQ-5327	57	57	Treatment	Chemotherapy		Cisplatin	1	150	mg	1	Adjuvant				IV		No	150	mg											
+TCGA-CQ-5327	54	99	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CQ-5330	57	88	Treatment	Chemotherapy						1	Adjuvant				IV		No													
+TCGA-CQ-5330	57	88	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CQ-5333	223	244	Treatment	Radiation Therapy		Radiation 1					Palliative										Primary Tumor Field	1	3	2400	No	External Beam	cgy			
+TCGA-CQ-5334	55	69	Treatment	Radiation Therapy		Radiation 1					Palliative										Primary Tumor Field	1	10	2508	No	External Beam	cgy			
+TCGA-CQ-6218	90	121	Treatment	Chemotherapy		Cisplatin	2	260	mg	1	Adjuvant				IV		No	260	mg											
+TCGA-CQ-6218	90	129	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CQ-6219	286	324	Treatment	Radiation Therapy		Radiation 1					Recurrence										Local Recurrence	1	35	7000	No	External Beam	cgy			
+TCGA-CQ-6224	61	81	Treatment	Chemotherapy		Cisplatin	2	170	mg	1	Adjuvant				IV		No	340	mg											
+TCGA-CQ-6224	61	103	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CQ-6225	49	91	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	18	4320	No	External Beam	cgy			
+TCGA-CQ-6228	315	319	Treatment	Radiation Therapy		Radiation 1					Recurrence										Distant Recurrence	2	5	2000	No	External Beam	cgy			
+TCGA-CQ-6228	154	186	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Primary Tumor Field	1	25	6000	No	External Beam	cgy			
+TCGA-CQ-7064	116	162	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-CQ-7065	249	291	Treatment	Chemotherapy		Cisplatin	3	197	mg	1	Recurrence				IV		No	477	mg											
+TCGA-CQ-7065	248	294	Treatment	Radiation Therapy		Radiation 1					Recurrence										Primary Tumor Field	1	35	7000	No	External Beam	cgy			
+TCGA-CQ-7068	1248	1302	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		35	7000	No	External	cgy			
+TCGA-CQ-7071	107	155	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-CQ-7072	116	158	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-CQ-A4CD	156	204	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-CQ-A4CH	120	148	Treatment	Chemotherapy		Cisplatin							partial response				No			No										
+TCGA-CQ-A4CH	119	163	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-CQ-A4CI	118	163	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-CR-5243	16	72	Treatment	Chemotherapy		Carboplatin	9	340	mg	1	Other, Specify In Notes				IV		No													
+TCGA-CR-5243	90	139	Treatment	Chemotherapy		Carboplatin	7	178	mg	2	Other, Specify In Notes				IV		No													
+TCGA-CR-5243	91	139	Treatment	Chemotherapy		Paclitaxel	7	69	mg	2	Other, Specify In Notes				IV		No													
+TCGA-CR-5243	16	72	Treatment	Chemotherapy		Paclitaxel	9	138	mg	1	Other, Specify In Notes				IV		No													
+TCGA-CR-5243	90	139	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Regional Site	1	33	5610	No	External Beam	cgy			
+TCGA-CR-5243	90	139	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-5247	19	80	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-CR-5247	19	80	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-5247	21	71	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Regional Site	1	33	5610	No	External Beam	cgy			
+TCGA-CR-5247	21	71	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CR-5247	21	71	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-5248	42	84	Treatment	Chemotherapy		Oxaliplatin											No			Yes										
+TCGA-CR-5248	42	84	Treatment	Chemotherapy		Pemetrexed											No			Yes										
+TCGA-CR-5248	137	179	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-CR-5248	137	179	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-5248	1124	1152	Treatment	Chemotherapy		Bevacizumab							clinical progressive disease				No			Yes										
+TCGA-CR-5248	1124	1152	Treatment	Chemotherapy		Docetaxel							clinical progressive disease				No			Yes										
+TCGA-CR-5248	1124	1152	Treatment	Chemotherapy		Cisplatin							clinical progressive disease				No			Yes										
+TCGA-CR-5248	1194	1208	Treatment	Immunotherapy		Cixutumumab											No			Yes										
+TCGA-CR-5248	137	183	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-5248	137	183	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CR-5249	102	140	Treatment	Chemotherapy		Cetuximab			mg	1	Adjuvant				IV		No													
+TCGA-CR-5249	107	140	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Regional Site	1	30	6000	No	External Beam	cgy			
+TCGA-CR-5249	107	140	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Regional Site	1	30	5700	No	External Beam	cgy			
+TCGA-CR-5249	107	140	Treatment	Radiation Therapy		Radiation 3					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CR-5250	57	136	Treatment	Chemotherapy		Cisplatin		232	mg	1	Other, Specify In Notes				IV		No													
+TCGA-CR-5250	56	113	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Regional Site	1	30	5400	No	External Beam	cgy			
+TCGA-CR-5250	56	113	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Primary Tumor Field	1	38	6840	No	External Beam	cgy			
+TCGA-CR-6467	75	118	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	5400	No	External Beam	cgy			
+TCGA-CR-6467	75	118	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Regional Site	1	30	6000	No	External Beam	cgy			
+TCGA-CR-6470	85	113	Treatment	Chemotherapy		Paclitaxel	5	221	mg	1	Adjuvant				IV		No	1105	mg											
+TCGA-CR-6470	85	113	Treatment	Chemotherapy		Carboplatin	5	70	mg	1	Adjuvant				IV		No	350	mg											
+TCGA-CR-6470	79	115	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Regional Site	1	27	5130	No	External Beam	cgy			
+TCGA-CR-6470	79	115	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Regional Site	1	27	5400	No	External Beam	cgy			
+TCGA-CR-6470	79	115	Treatment	Radiation Therapy		Radiation 3					Adjuvant										Primary Tumor Field	1	27	5400	No	External Beam	cgy			
+TCGA-CR-6471	1052	1052	Treatment	Chemotherapy		Cetuximab	1	400	mg/m2	3	Palliative				IV		No													
+TCGA-CR-6471	548	595	Treatment	Chemotherapy		Paclitaxel	8	60	mg/m2	1	Recurrence				IV		No													
+TCGA-CR-6471	618	646	Treatment	Chemotherapy		Carboplatin	5	1.5	auc	2	Recurrence				IV		No													
+TCGA-CR-6471	1108	1129	Treatment	Chemotherapy		Docetaxel	4	40	mg/m2	5	Palliative				IV		No													
+TCGA-CR-6471	548	595	Treatment	Chemotherapy		Carboplatin	8	2	auc	1	Recurrence				IV		No													
+TCGA-CR-6471	618	646	Treatment	Chemotherapy		Paclitaxel	5	35	mg/m2	2	Recurrence				IV		No													
+TCGA-CR-6471	1059	1087	Treatment	Chemotherapy		Methotrexate	5	30	mg/m2	4	Palliative				IV		No													
+TCGA-CR-6471	77	114	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Regional Site	1	27	5130	No	External Beam	cgy			
+TCGA-CR-6471	614	646	Treatment	Radiation Therapy		Radiation 2					Recurrence										Regional Site	2	50	6250	No	External Beam	cgy			
+TCGA-CR-6471	77	114	Treatment	Radiation Therapy		Radiation 3					Adjuvant										Primary Tumor Field	1	27	5400	No	External Beam	cgy			
+TCGA-CR-6471	614	646	Treatment	Radiation Therapy		Radiation 4					Recurrence										Primary Tumor Field	2	50	6250	No	External Beam	cgy			
+TCGA-CR-6471	1081	1081	Treatment	Radiation Therapy		Radiation 5					Palliative										Distant Recurrence	4			No	Other	cgy			
+TCGA-CR-6471	77	114	Treatment	Radiation Therapy		Radiation 6					Adjuvant										Regional Site	1	27	5400	No	External Beam	cgy			
+TCGA-CR-6471	839		Treatment	Radiation Therapy		Radiation 7					Recurrence										Regional Site	3			No	External Beam	cgy			
+TCGA-CR-6472	109	123	Treatment	Chemotherapy		Carboplatin	3	1	auc	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6472	109	123	Treatment	Chemotherapy		Paclitaxel	3	30	mg/m2	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6472	28	84	Treatment	Chemotherapy		Paclitaxel	9	60	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6472	28	84	Treatment	Chemotherapy		Carboplatin	9	2	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6472	109	154	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6472	109	154	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	33	5610	No	External Beam	cgy			
+TCGA-CR-6472	109	154	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6473	47	94	Treatment	Chemotherapy		Paclitaxel	3	30	mg/m2	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6473	19	40	Treatment	Chemotherapy		Paclitaxel	4	60	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6473	19	40	Treatment	Chemotherapy		Carboplatin	4	2	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6473	47	94	Treatment	Chemotherapy		Carboplatin	2	1	auc	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6473	45	94	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Regional Site	1	33	5610	No	External Beam	cgy			
+TCGA-CR-6473	45	94	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6473	45	94	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6474	108	150	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CR-6477	77	84	Treatment	Chemotherapy		Paclitaxel	2	30	mg/m2	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6477	10	66	Treatment	Chemotherapy		Carboplatin	8	2	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6477	10	66	Treatment	Chemotherapy		Paclitaxel	8	60	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6477	77	84	Treatment	Chemotherapy		Carboplatin	2	1	auc	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6477	78	123	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	32	6720	No	External Beam	cgy			
+TCGA-CR-6477	78	123	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	24	5040	No	External Beam	cgy			
+TCGA-CR-6477	78	123	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Primary Tumor Field	1	24	5040	No	External Beam	cgy			
+TCGA-CR-6478	125	162	Treatment	Chemotherapy		Paclitaxel	5	30	mg/m2	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6478	125	162	Treatment	Chemotherapy		Carboplatin	5	1	auc	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6478	44	107	Treatment	Chemotherapy		Paclitaxel	9	60	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6478	44	107	Treatment	Chemotherapy		Carboplatin	9	2	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6478	125	178	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Regional Site	1	27	5400	No	External Beam	cgy			
+TCGA-CR-6478	125	178	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	3	1890	No	External Beam	cgy			
+TCGA-CR-6478	125	178	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Primary Tumor Field	1	24	5040	No	External Beam	cgy			
+TCGA-CR-6480	27	85	Treatment	Chemotherapy		Cisplatin	3	75	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6480	27	85	Treatment	Chemotherapy		Cetuximab	3	900	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6480	27	85	Treatment	Chemotherapy		Paclitaxel	3	270	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6480	103	145	Treatment	Chemotherapy		Cetuximab	7	250	mg/m2	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6480	103	152	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	27	5400	No	External Beam	cgy			
+TCGA-CR-6480	103	152	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	27	5130	No	External Beam	cgy			
+TCGA-CR-6480	103	152	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Regional Site	1	35	7000	No	External Beam	cgy			
+TCGA-CR-6481	31	73	Treatment	Chemotherapy		Paclitaxel	5	30	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6481	31	73	Treatment	Chemotherapy		Carboplatin	5	1	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6481	29	74	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6481	29	74	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	24	5040	No	External Beam	cgy			
+TCGA-CR-6481	29	74	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6482	74	74	Treatment	Chemotherapy		Paclitaxel	1	90	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6482	158	193	Treatment	Chemotherapy		Paclitaxel	6	30	mg/m2	3	Other, Specify In Notes				IV		No													
+TCGA-CR-6482	74	74	Treatment	Chemotherapy		Cetuximab	1	400	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6482	158	193	Treatment	Chemotherapy		Carboplatin	6	1	auc	3	Other, Specify In Notes				IV		No													
+TCGA-CR-6482	88	137	Treatment	Chemotherapy		Paclitaxel	8	60	mg/m2	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6482	74	74	Treatment	Chemotherapy		Cisplatin	1	75	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6482	88	137	Treatment	Chemotherapy		Carboplatin	8	2	auc	2	Other, Specify In Notes				IV		No													
+TCGA-CR-6482	154	198	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6482	154	198	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	24	5040	No	External Beam	cgy			
+TCGA-CR-6482	154	198	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CR-6484	109	144	Treatment	Chemotherapy		Paclitaxel	6	30	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6484	109	144	Treatment	Chemotherapy		Carboplatin	6	1	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-6484	109	154	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CR-6484	109	154	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	25	5000	No	External Beam	cgy			
+TCGA-CR-6484	109	154	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Regional Site	1	33	6600	No	External Beam	cgy			
+TCGA-CR-6491	191	201	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-6491	191	201	Treatment	Chemotherapy		Docetaxel							complete response				No			No										
+TCGA-CR-6491	191	201	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field				No	External				
+TCGA-CR-6492	114	145	Treatment	Radiation Therapy		Radiation 1					Adjuvant											1			No	External Beam				
+TCGA-CR-6493	100	150	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-CR-6493	100	150	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-6493	100	150	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	7000	No	External	cgy			
+TCGA-CR-7365	140	192	Treatment	Chemotherapy						1	Adjuvant						No													
+TCGA-CR-7365	140	192	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1			No	External Beam				
+TCGA-CR-7367	90	98	Treatment	Chemotherapy		Paclitaxel											No			No										
+TCGA-CR-7367	90	98	Treatment	Chemotherapy		Carboplatin											No			No										
+TCGA-CR-7367	95	132	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Regional Site	1	27	5130	No	External Beam	cgy			
+TCGA-CR-7367	95	132	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Regional Site	1	27	5400	No	External Beam	cgy			
+TCGA-CR-7367	95	132	Treatment	Radiation Therapy		Radiation 3					Adjuvant										Primary Tumor Field	1	27	5400	No	External Beam	cgy			
+TCGA-CR-7370	28	80	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	28	5400	No	External Beam	cgy			
+TCGA-CR-7373	96	138	Treatment	Chemotherapy		Cisplatin				1	Adjuvant				IV		No													
+TCGA-CR-7373	96	138	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1			No	External Beam				
+TCGA-CR-7379	126	162	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	25	5000	No	External Beam	cgy			
+TCGA-CR-7379	126	169	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-CR-7380	92	153	Treatment	Chemotherapy						1	Adjuvant				IV		No													
+TCGA-CR-7380	100	150	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	33	6600	No	External Beam	cgy			
+TCGA-CR-7380	100	140	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Primary Tumor Field	1	25	5000	No	External Beam	cgy			
+TCGA-CR-7383	462	483	Treatment	Chemotherapy		Paclitaxel							partial response				No			No										
+TCGA-CR-7383	462	483	Treatment	Chemotherapy		Carboplatin							partial response				No			No										
+TCGA-CR-7385	29	87	Treatment	Chemotherapy						1	Adjuvant				IV		No													
+TCGA-CR-7385	29	87	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1			No	External Beam				
+TCGA-CR-7386	97	132	Treatment	Chemotherapy		Paclitaxel	6	30	mg/m2	1	Adjuvant				IV		No													
+TCGA-CR-7386	97	132	Treatment	Chemotherapy		Carboplatin	6	1	auc	1	Adjuvant				IV		No													
+TCGA-CR-7386	96	135	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	29	5800	No	External Beam	cgy			
+TCGA-CR-7386	96	135	Treatment	Radiation Therapy		Radiation 2					Adjuvant										Regional Site	1	29	4390	No	External Beam	cgy			
+TCGA-CR-7388	65	93	Treatment	Chemotherapy		Carboplatin	5	2	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-7388	114	121	Treatment	Chemotherapy		Paclitaxel	2	30	mg/m2	2	Other, Specify In Notes				IV		No													
+TCGA-CR-7388	705	733	Treatment	Chemotherapy		Cetuximab				3	Palliative				IV		No													
+TCGA-CR-7388	114	121	Treatment	Chemotherapy		Carboplatin	2	1	auc	2	Other, Specify In Notes				IV		No													
+TCGA-CR-7388	65	93	Treatment	Chemotherapy		Paclitaxel	5	60	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-7388	110	148	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Regional Site	1	21	3570	No	External Beam	cgy			
+TCGA-CR-7388	110	148	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Primary Tumor Field	1	21	4410	No	External Beam	cgy			
+TCGA-CR-7388	110	148	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Regional Site	1	21	4410	No	External Beam	cgy			
+TCGA-CR-7389	31	73	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-CR-7389	31	73	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-7389	31	75	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CR-7389	31	75	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	33	5610	No	External Beam	cgy			
+TCGA-CR-7389	31	75	Treatment	Radiation Therapy		Radiation 3					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-7390	134	176	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		21	6000	No	External	cgy			
+TCGA-CR-7390	134	176	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External				
+TCGA-CR-7392	109	151	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6000	No	External				
+TCGA-CR-7392	109	151	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			5400	No	External				
+TCGA-CR-7393	-303	105	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-CR-7393	63	105	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-7393	62	104	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field				No	External				
+TCGA-CR-7394	106	126	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		15	3000	No	External	cgy			
+TCGA-CR-7394	106	126	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		15	3000	No	External	cgy			
+TCGA-CR-7397	63	99	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-CR-7397	63	99	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-7397	61	100	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		27	4860	No	External	cgy			
+TCGA-CR-7397	61	100	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		27	6000	No	External	cgy			
+TCGA-CR-7397	61	100	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		27	4860	No	External	cgy			
+TCGA-CR-7402	37	101	Treatment	Chemotherapy		Carboplatin		1.5	auc	1	Other, Specify In Notes				IV		No													
+TCGA-CR-7402	37	101	Treatment	Chemotherapy		Paclitaxel		40	mg/m2	1	Other, Specify In Notes				IV		No													
+TCGA-CR-7402	36	101	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1		7020	No	External Beam	cgy			
+TCGA-CR-7402	36	101	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1		5040	No	External Beam	cgy			
+TCGA-CR-7404	18	67	Treatment	Chemotherapy		Paclitaxel											No			No										
+TCGA-CR-7404	1297	1318	Treatment	Chemotherapy									clinical progressive disease	phase i trial			No			Yes										
+TCGA-CR-7404	1332	1416	Treatment	Chemotherapy		Pemetrexed											No			No										
+TCGA-CR-7404	18	67	Treatment	Chemotherapy		Carboplatin											No			No										
+TCGA-CR-7404	85	135	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-CR-7404	85	135	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-CR-7404	298	354	Treatment	Chemotherapy		Cetuximab							partial response				No			No										
+TCGA-CR-7404	375	415	Treatment	Chemotherapy		Capecitabine											No			No										
+TCGA-CR-7404	466	599	Treatment	Chemotherapy		Cetuximab											No			No										
+TCGA-CR-7404	606	634	Treatment	Chemotherapy		Paclitaxel							stable disease				No			No										
+TCGA-CR-7404	1052	1080	Treatment	Chemotherapy		Methotrexate											No			No										
+TCGA-CR-7404	78	137	Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Primary									Primary Tumor Field	1	33	6930	No	External Beam	cgy			
+TCGA-CR-7404	78	137	Treatment	Radiation Therapy		Radiation 2					Other, Specify In Notes	Primary									Regional Site	1	33	5610	No	External Beam	cgy			
+TCGA-CR-7404	78	137	Treatment	Radiation Therapy		Radiation 4					Other, Specify In Notes	Primary									Regional Site	1	33	6930	No	External Beam	cgy			
+TCGA-CV-5430	1641	1702	Treatment	Chemotherapy		Carboplatin	4				Recurrence				IV		No													
+TCGA-CV-5430	1641	1702	Treatment	Chemotherapy		Paclitaxel	4				Recurrence				IV		No													
+TCGA-CV-5430	1641	1702	Treatment	Chemotherapy		Irinotecan	4				Recurrence				IV		No													
+TCGA-CV-5430	379	382	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		4	50	No	External Beam	cgy			
+TCGA-CV-5431	28	69	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		9	7000	No	External Beam	cgy			
+TCGA-CV-5434	3246	3259	Treatment	Chemotherapy		Carboplatin	2				Recurrence				IV		No													
+TCGA-CV-5434	3246	3259	Treatment	Chemotherapy		Paclitaxel	2				Recurrence				IV		No													
+TCGA-CV-5434	45	87	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field			6000	No	External Beam	cgy			
+TCGA-CV-5435	28	63	Treatment	Chemotherapy		Carboplatin	2				Adjuvant				IV		No													
+TCGA-CV-5435	305	336	Treatment	Chemotherapy		Paclitaxel					Recurrence				IV		No													
+TCGA-CV-5435	305	336	Treatment	Chemotherapy		Carboplatin					Recurrence				IV		No													
+TCGA-CV-5435	21	62	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		30	6000	No	External Beam	cgy			
+TCGA-CV-5439	231	345	Treatment	Chemotherapy		Carboplatin	6				Recurrence				IV		No													
+TCGA-CV-5439	378	440	Treatment	Chemotherapy		Gefitinib	2				Palliative				PO		No													
+TCGA-CV-5439	64	108	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		33	4500	No	External Beam	cgy			
+TCGA-CV-5440	19		Treatment	Chemotherapy		Paclitaxel					Adjuvant				IV		Yes													
+TCGA-CV-5440	28	86	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		30	60	No	External Beam	cgy			
+TCGA-CV-5441	52	89	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		30	60	No	External Beam				
+TCGA-CV-5966	33	78	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		20	40	No	External	gy			
+TCGA-CV-5966	33	78	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External	gy			
+TCGA-CV-5973	50	80	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-5977	40	82	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-5977	40	82	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		21	42	No	External	gy			
+TCGA-CV-5979	43	84	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		30	6000	No	External Beam	cgy			
+TCGA-CV-6936	73	134	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		30	66	No	External	gy			
+TCGA-CV-6941	31	70	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	62	No	External	gy			
+TCGA-CV-6941	31	70	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External	gy			
+TCGA-CV-6950	26	56	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	63	No	External				
+TCGA-CV-6954	48	89	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External				
+TCGA-CV-6954	48	89	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External				
+TCGA-CV-6959	140	160	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		15	45	No	External	gy			
+TCGA-CV-7090	69	108	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		2	60	No	External	gy			
+TCGA-CV-7090	69	108	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		2	50	No	External	gy			
+TCGA-CV-7235	46	81	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		20	40	No	External	gy			
+TCGA-CV-7235	43	81	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		10	20	No	External	gy			
+TCGA-CV-7238	86	127	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-7250	28	84	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External				
+TCGA-CV-7252	33	89	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		35	63	No	External	gy			
+TCGA-CV-7416	334	334	Treatment	Chemotherapy		Cisplatin											No			No										
+TCGA-CV-7416	0		Treatment	Radiation Therapy		Radiation 1					Other, Specify In Notes	Neoadjuvant									Primary Tumor Field					External Beam				
+TCGA-CV-7418	62		Treatment	Radiation Therapy		Radiation 1							complete response												No					
+TCGA-CV-7418	509	567	Treatment	Radiation Therapy		Radiation 2															Local Recurrence		31	60	No	External	gy			
+TCGA-CV-7422	41	78	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	30	No	External	gy			
+TCGA-CV-7422	41	78	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External	gy			
+TCGA-CV-7429	70		Treatment	Radiation Therapy		Radiation 1							partial response								Primary Tumor Field		12	36	No	External	gy			
+TCGA-CV-7435	43	87	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	30	No	External	gy			
+TCGA-CV-7435	-291	87	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		27	54	No	External	gy			
+TCGA-CV-7435	-291	87	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		14	42	No	External	gy			
+TCGA-CV-A45R	39	78	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		31	62	No	External	gy			
+TCGA-CV-A45R	39	78	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		13	39	No	External	gy			
+TCGA-CV-A45U	31	70	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A45U	31	70	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External	gy			
+TCGA-CV-A45X	68	107	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A45X	68	107	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External	gy			
+TCGA-CV-A45Y	37	78	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A45Z	965	1004	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A460	28	69	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		21	42	No	External	gy			
+TCGA-CV-A461	39	52	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A461	39	52	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	54	No	External	gy			
+TCGA-CV-A464	70	108	Treatment	Radiation Therapy		Radiation 1							complete response								Local Recurrence		30	60	No	External	gy			
+TCGA-CV-A464	70	108	Treatment	Radiation Therapy		Radiation 2							complete response								Local Recurrence		30	57	No	External	gy			
+TCGA-CV-A464	70	108	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		30	54	No	External	gy			
+TCGA-CV-A468	26	67	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		21	42	No	External	gy			
+TCGA-CV-A468	26	67	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External	gy			
+TCGA-CV-A468	26	67	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		14	42	No	External	gy			
+TCGA-CV-A6JD	41	80	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A6JD	41	80	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External	gy			
+TCGA-CV-A6JN	39	77	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A6JN	39	77	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		30	57	No	External	gy			
+TCGA-CV-A6JO	28	69	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A6JU	75	110	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A6JU	75	110	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	50	No	External				
+TCGA-CV-A6JY	52	94	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A6JY	52	94	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		30	56	No	External	gy			
+TCGA-CV-A6K1	44	85	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-CV-A6K2	53	92	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		30	60	No	External	gy			
+TCGA-D6-6515	65	71	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		5	2000	No	External Beam	cgy			
+TCGA-D6-6517	194	257	Treatment	Chemotherapy		Methotrexate	8	8	mg		Progression				IV		No	62.8	mg											
+TCGA-D6-6517	270	331	Treatment	Radiation Therapy		Radiation 1					Palliative										Distant Site			2000	No	External Beam	cgy			
+TCGA-D6-6823	84	97	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		32	6200	No	External Beam	cgy			
+TCGA-D6-6827	57	67	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field		8	4800	No	Implants	cgy			
+TCGA-D6-A6EK	39	105	Treatment	Chemotherapy		Cisplatin							partial response				No			No										
+TCGA-D6-A6EK	39	105	Treatment	Radiation Therapy		Radiation 1							partial response								Primary Tumor Field		35	70	No	External	gy			
+TCGA-D6-A6EM	51	94	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	66	No	External	gy			
+TCGA-D6-A6EN	83	125	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-D6-A6EO	73	119	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	66	No	External	gy			
+TCGA-D6-A6EQ	51	92	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-D6-A6ES	88	132	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-D6-A74Q	44	88	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	66	No	External	gy			
+TCGA-DQ-5624	36	63	Treatment	Chemotherapy		Cisplatin	2	80	mg/m2	1	Adjuvant				IV		No	347	mg											
+TCGA-DQ-5624	37	86	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		5000	No	External Beam	cgy			
+TCGA-DQ-5629	52	98	Treatment	Chemotherapy		Carboplatin	07			1	Adjuvant				IV		No	233	mg											
+TCGA-DQ-5629	52	98	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Regional Site	1	35	7000	No	External Beam	cgy			
+TCGA-DQ-5630	34	76	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	30	6000	No	External Beam	cgy			
+TCGA-DQ-5631	32	67	Treatment	Chemotherapy		Cisplatin	5	40	mg/m2	01	Adjuvant				IV		No	80	mg											
+TCGA-DQ-5631	475	518	Treatment	Chemotherapy		Carboplatin	02			2	Palliative				IV		No	577	mg											
+TCGA-DQ-5631	475	518	Treatment	Chemotherapy		Pemetrexed	2			2	Palliative				IV		No	965	mg											
+TCGA-DQ-5631	32	71	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6000	No	External Beam	cgy			
+TCGA-DQ-5631	449	456	Treatment	Radiation Therapy		Radiation 2					Palliative	Chest									Distant Recurrence	2	5	2000	No	External Beam	cgy			
+TCGA-DQ-5631	477	491	Treatment	Radiation Therapy		Radiation 3					Palliative	Back									Distant Recurrence	3	12	3600	No	External Beam	cgy			
+TCGA-DQ-7588	159	215	Treatment	Chemotherapy		Cetuximab	1			1	Recurrence				IV		No													
+TCGA-DQ-7588	379	421	Treatment	Chemotherapy		Docetaxel	3	152	mg	2	Palliative				IV		No	455	mg											
+TCGA-DQ-7588	379	421	Treatment	Chemotherapy		Gossypol	3	80	mg/day	2	Palliative				PO		No	480	mg											
+TCGA-DQ-7588	159	215	Treatment	Chemotherapy		Carboplatin	1			1	Recurrence				IV		No													
+TCGA-DQ-7588	421	425	Treatment	Chemotherapy		Gossypol	1	20	mg/day	2	Palliative				PO		No	100	mg											
+TCGA-DQ-7588	159	215	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1	32	6400	No	External Beam	cgy			
+TCGA-DQ-7589	9	34	Treatment	Chemotherapy		Carboplatin							stable disease				No			No										
+TCGA-DQ-7589	9	34	Treatment	Chemotherapy		Docetaxel							stable disease				No			No										
+TCGA-DQ-7589	9	34	Treatment	Chemotherapy		Fluorouracil							stable disease				No			No										
+TCGA-DQ-7589	119	154	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-DQ-7589	119	154	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-DQ-7589	119	164	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	66	No	External	gy			
+TCGA-DQ-7590	45	87	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-DQ-7590	45	87	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-DQ-7590	45	91	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	70	No	External	gy			
+TCGA-DQ-7591	22	69	Treatment	Chemotherapy		Carboplatin	1	83	mg/wk	1	Adjuvant				IV		No	664	mg											
+TCGA-DQ-7591	22	69	Treatment	Chemotherapy		Paclitaxel	1	56	mg/wk	1	Adjuvant				IV		No	448	mg											
+TCGA-DQ-7591	22	70	Treatment	Radiation Therapy		Radiation 1					Adjuvant	Concurrent Chemoradiation As Definitive Treatment									Primary Tumor Field	1	35	7000	No	External Beam	cgy			
+TCGA-DQ-7592	52	94	Treatment	Chemotherapy		Cisplatin	1	65	mg/wk	1	Adjuvant				IV		No	455	mg											
+TCGA-DQ-7592	52	104	Treatment	Radiation Therapy		Radiation 1					Adjuvant										Primary Tumor Field	1		6600	No	External Beam	cgy			
+TCGA-DQ-7593	25	67	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-DQ-7593	25	67	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-DQ-7593	25	82	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	70	No	External	gy			
+TCGA-DQ-7594	12	53	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-DQ-7594	12	53	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-DQ-7594	12	61	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	70	No	External	gy			
+TCGA-DQ-7595	34	62	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-DQ-7595	34	85	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			70	No	External	gy			
+TCGA-DQ-7596	13	60	Treatment	Chemotherapy		Cetuximab							partial response				No			No										
+TCGA-DQ-7596	203	266	Treatment	Chemotherapy		Pemetrexed							complete response				No			No										
+TCGA-DQ-7596	203	266	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-DQ-7596	19	69	Treatment	Radiation Therapy		Radiation 1							partial response								Primary Tumor Field		35	70	No	External	gy			
+TCGA-F7-7848	92	117	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		18	36	No	External	gy			
+TCGA-F7-7848	142	162	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		14	28	No	External	gy			
+TCGA-F7-A50G	43	72	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		40	80	No	External	gy			
+TCGA-F7-A50J	70	114	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-F7-A50J	70	114	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	66	No	External	gy			
+TCGA-F7-A61S	20	73	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		2	98	No	External	gy			
+TCGA-F7-A61S	230	255	Treatment	Radiation Therapy		Radiation 2							stable disease								Regional Site		1	38	No	External	gy			
+TCGA-F7-A623	19	67	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		23	46	No	External	gy			
+TCGA-F7-A624	77	148	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	66	No	External	gy			
+TCGA-H7-7774	424	454	Treatment	Radiation Therapy		Radiation 1																			No					
+TCGA-H7-8501	76	137	Treatment	Chemotherapy									complete response				No													
+TCGA-H7-8501	76	137	Treatment	Radiation Therapy		Radiation 1							complete response												No					
+TCGA-H7-8502	77	108	Treatment	Chemotherapy													No													
+TCGA-H7-8502	77	108	Treatment	Radiation Therapy		Radiation 1																			No					
+TCGA-H7-A6C4	74		Treatment	Chemotherapy		Cisplatin							complete response				No													
+TCGA-H7-A6C4	74	113	Treatment	Radiation Therapy		Radiation 1							complete response											63	No	External	gy			
+TCGA-H7-A6C5	65	112	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-H7-A76A	62	101	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			63	No	External	gy			
+TCGA-H7-A76A	62	101	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			60	No	External	gy			
+TCGA-H7-A76A	62	101	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site			51	No	External				
+TCGA-HD-7229	35	85	Treatment	Chemotherapy		Carboplatin											No			No										
+TCGA-HD-7229	35	85	Treatment	Chemotherapy		Paclitaxel											No			No										
+TCGA-HD-7229	35	85	Treatment	Chemotherapy		Cetuximab											No			No										
+TCGA-HD-7229	187	187	Treatment	Chemotherapy		Cisplatin							clinical progressive disease				No			No										
+TCGA-HD-7229	187	187	Treatment	Chemotherapy		Docetaxel							clinical progressive disease				No			No										
+TCGA-HD-7229	187	187	Treatment	Chemotherapy		Fluorouracil							clinical progressive disease				No			No										
+TCGA-HD-7229	35	85	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		35	7000	No	External	cgy			
+TCGA-HD-7753	71	85	Treatment	Chemotherapy		Cetuximab							complete response				No			No										
+TCGA-HD-7753	68	126	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6630	No	External	cgy			
+TCGA-HD-7831	72	116	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-HD-7832	126	172	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field				No	External				
+TCGA-HD-8224	90	147	Treatment	Chemotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-HD-8224	97	147	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-HD-8314	79	121	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-HD-8314	79	114	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-HL-7533	24	87	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-HL-7533	24	87	Treatment	Chemotherapy		Docetaxel							complete response				No			No										
+TCGA-HL-7533	24	87	Treatment	Chemotherapy		Capecitabine							complete response				No			No										
+TCGA-IQ-7630	102	147	Treatment	Chemotherapy		Docetaxel							complete response				No			No										
+TCGA-IQ-7630	102	147	Treatment	Targeted Molecular Therapy		Cetuximab							complete response				No			No										
+TCGA-IQ-7630	102	147	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-IQ-7632	73	114	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-IQ-A61E	96	138	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-IQ-A61E	103	142	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			60	No	External	gy			
+TCGA-IQ-A61G	130	168	Treatment	Chemotherapy		Cisplatin							clinical progressive disease				No			No										
+TCGA-IQ-A61G	131	168	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		30	60	No	External	gy			
+TCGA-IQ-A61J	64	99	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-IQ-A61J	62	101	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			60	No	External	gy			
+TCGA-IQ-A61K	108	108	Treatment	Chemotherapy		Cisplatin											No			No										
+TCGA-IQ-A61K	112	138	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			44	No	External	gy			
+TCGA-IQ-A61L	262		Treatment	Chemotherapy		Cisplatin											Yes			No										
+TCGA-IQ-A61L	262		Treatment	Chemotherapy		Cetuximab											Yes			No										
+TCGA-IQ-A61L	50	85	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		9	18	No	External	gy			
+TCGA-IQ-A61L	254	262	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Local Recurrence		4	8	No	External	gy			
+TCGA-IQ-A61O	69	111	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-IQ-A61O	69	127	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	66	No	External	gy			
+TCGA-IQ-A6SG	59	111	Treatment	Radiation Therapy		Radiation 1															Regional Site		30	60	No	External	gy			
+TCGA-IQ-A6SH	50	95	Treatment	Radiation Therapy		Radiation 1															Regional Site		30	60	No	External	gy			
+TCGA-KU-A66S	59	119	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		38	6840	No	External	cgy			
+TCGA-KU-A66T	121	166	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		30	5400	No	External	cgy			
+TCGA-KU-A6H7	65	100	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-KU-A6H7	65	115	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6660	No	External	cgy			
+TCGA-KU-A6H7	65	115	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		33	6660	No	External	cgy			
+TCGA-KU-A6H7	65	115	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		33	5610	No	External	cgy			
+TCGA-KU-A6H7	65	115	Treatment	Radiation Therapy		Radiation 4							complete response								Regional Site		33	5280	No	External	cgy			
+TCGA-KU-A6H8	122	174	Treatment	Immunotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-KU-A6H8	210		Treatment	Chemotherapy		Paclitaxel											Yes			No										
+TCGA-KU-A6H8	210		Treatment	Chemotherapy		Carboplatin											Yes			No										
+TCGA-KU-A6H8	116	172	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		36	7100	No	External	cgy			
+TCGA-KU-A6H8	116	172	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Regional Site		36	5240	No	External	cgy			
+TCGA-KU-A6H8	116	172	Treatment	Radiation Therapy		Radiation 3							radiographic progressive disease								Regional Site		36	5860	No	External	cgy			
+TCGA-KU-A6H8	116	172	Treatment	Radiation Therapy		Radiation 4							radiographic progressive disease								Regional Site		36	5550	No	External	cgy			
+TCGA-MT-A51W	70	100	Treatment	Radiation Therapy		Radiation 1							stable disease								Primary Tumor Field				No	External				
+TCGA-MT-A67G	72	112	Treatment	Chemotherapy		Cisplatin											No			No										
+TCGA-MT-A67G	50	105	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		7	6000	No	External	cgy			
+TCGA-MZ-A5BI	41	70	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-MZ-A5BI	40	86	Treatment	Radiation Therapy		Radiation 1							complete response								Regional Site		33	69.96	No	External	gy			
+TCGA-MZ-A5BI	40	86	Treatment	Radiation Therapy		Radiation 2							complete response								Primary Tumor Field		33	69.96	No	External	gy			
+TCGA-MZ-A6I9	57	99	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-MZ-A6I9	365	421	Treatment	Targeted Molecular Therapy		Rigosertib							clinical progressive disease				No			Yes										
+TCGA-MZ-A6I9	449	449	Treatment	Chemotherapy		Carboplatin							clinical progressive disease				No			No										
+TCGA-MZ-A6I9	449	449	Treatment	Chemotherapy		Docetaxel							clinical progressive disease				No			No										
+TCGA-MZ-A6I9	57	102	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	69.96	No	External	gy			
+TCGA-MZ-A6I9	57	102	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		33	69.96	No	External	gy			
+TCGA-MZ-A7D7	77	119	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-MZ-A7D7	526		Treatment	Targeted Molecular Therapy		Cetuximab											Yes			Yes										
+TCGA-MZ-A7D7	526		Treatment	Chemotherapy		Eribulin											Yes			Yes										
+TCGA-MZ-A7D7	77	126	Treatment	Radiation Therapy		Radiation 1							complete response								Regional Site		33	66	No	External	gy			
+TCGA-MZ-A7D7	77	126	Treatment	Radiation Therapy		Radiation 2							complete response								Primary Tumor Field		33	66	No	External	gy			
+TCGA-P3-A5Q5	69	120	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6600	No	External	cgy			
+TCGA-P3-A5Q5	69	120	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			6600	No	External	cgy			
+TCGA-P3-A5Q6	43	104	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-P3-A5Q6	43	104	Treatment	Chemotherapy		Cetuximab							complete response				No			No										
+TCGA-P3-A5Q6	49	98	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			4000	No	External	cgy			
+TCGA-P3-A5Q6	49	98	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			5000	No	External	cgy			
+TCGA-P3-A5QE	38	80	Treatment	Radiation Therapy		Radiation 1							complete response								Regional Site			5400	No	External	cgy			
+TCGA-P3-A5QE	38	80	Treatment	Radiation Therapy		Radiation 2							complete response								Primary Tumor Field			6000	No	External	cgy			
+TCGA-P3-A5QF	57	88	Treatment	Chemotherapy		Cetuximab											No			No										
+TCGA-P3-A5QF	50	105	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field			6660	No	External	cgy			
+TCGA-P3-A5QF	50	105	Treatment	Radiation Therapy		Radiation 2															Regional Site			6660	No	External	cgy			
+TCGA-P3-A6SW	61	122	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6480	No	External	cgy			
+TCGA-P3-A6SW	61	122	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			6480	No	External	cgy			
+TCGA-P3-A6SX	61	91	Treatment	Chemotherapy									complete response				No			No										
+TCGA-P3-A6SX	30	91	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			5940	No	External	cgy			
+TCGA-P3-A6SX	30	91	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			5040	No	External	cgy			
+TCGA-P3-A6T0	59	120	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6000	No	External	cgy			
+TCGA-P3-A6T2	30	91	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-P3-A6T2	30	91	Treatment	Radiation Therapy		Radiation 1							complete response												No	External				
+TCGA-P3-A6T3	61	92	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-P3-A6T3	61	120	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6640	No	External	cgy			
+TCGA-P3-A6T3	61	120	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			6640	No	External	cgy			
+TCGA-P3-A6T6	273	365	Treatment	Chemotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-P3-A6T6	273	365	Treatment	Chemotherapy		Paclitaxel							clinical progressive disease				No			No										
+TCGA-P3-A6T6	30	61	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6600	No	External	cgy			
+TCGA-P3-A6T6	30	61	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			5000	No	External	cgy			
+TCGA-P3-A6T7	91	122	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-P3-A6T7	91	122	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			6600	No	External	cgy			
+TCGA-P3-A6T7	91	122	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			5000	No	External	cgy			
+TCGA-P3-A6T8	92	122	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-P3-A6T8	92	122	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			5000	No	External	cgy			
+TCGA-P3-A6T8	92	122	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			5000	No	External	cgy			
+TCGA-QK-A652	77	77	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		31	59.3	No	External	gy			
+TCGA-QK-A6IF	17	63	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-QK-A6IF	17	63	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-QK-A6IF	16	63	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	70	No	External	gy			
+TCGA-QK-A6IF	16	63	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		35	59.85	No	External	gy			
+TCGA-QK-A6IF	16	63	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		35	53.9	No	External	gy			
+TCGA-QK-A6IG	51	98	Treatment	Chemotherapy		Carboplatin							clinical progressive disease				No			No										
+TCGA-QK-A6IG	51	98	Treatment	Chemotherapy		Paclitaxel							clinical progressive disease				No			No										
+TCGA-QK-A6IG	51	98	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		33	66	No	External	gy			
+TCGA-QK-A6IG	51	98	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Regional Site		33	59.73	No	External	gy			
+TCGA-QK-A6IG	51	98	Treatment	Radiation Therapy		Radiation 3							radiographic progressive disease								Regional Site		33	53.79	No	External	gy			
+TCGA-QK-A6IH	49	84	Treatment	Chemotherapy		Carboplatin							clinical progressive disease				No			No										
+TCGA-QK-A6IH	49	84	Treatment	Chemotherapy		Paclitaxel							clinical progressive disease				No			No										
+TCGA-QK-A6IH	49	91	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		38	56	No	External	gy			
+TCGA-QK-A6IH	49	91	Treatment	Radiation Therapy		Radiation 2															Regional Site		38	50.96	No	External	gy			
+TCGA-QK-A6IH	49	91	Treatment	Radiation Therapy		Radiation 3															Regional Site		38	45.92	No	External	gy			
+TCGA-QK-A6II	57	99	Treatment	Chemotherapy		Cisplatin											No			No										
+TCGA-QK-A6II	183	183	Treatment	Chemotherapy		Carboplatin							clinical progressive disease				No			No										
+TCGA-QK-A6II	183	183	Treatment	Chemotherapy		Paclitaxel							clinical progressive disease				No			No										
+TCGA-QK-A6II	183	183	Treatment	Targeted Molecular Therapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-QK-A6II	57	112	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		24	66.7	No	External	gy			
+TCGA-QK-A6II	57	112	Treatment	Radiation Therapy		Radiation 2															Regional Site		24	60.73	No	External	gy			
+TCGA-QK-A6II	57	112	Treatment	Radiation Therapy		Radiation 3															Regional Site		24	54.76	No	External	gy			
+TCGA-QK-A6VB	78	116	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-QK-A6VB	78	116	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		30	6000	No	External	cgy			
+TCGA-QK-A6VC	49	66	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		14	28	No	External	gy			
+TCGA-QK-A6VC	49	66	Treatment	Radiation Therapy		Radiation 2															Regional Site		14	25.5	No	External	gy			
+TCGA-QK-A8Z7	105	166	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-QK-A8Z7	105	166	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-QK-A8Z7	101	151	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field			70.29	No	External	gy			
+TCGA-QK-A8Z7	101	151	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site			70.29	No	External	gy			
+TCGA-QK-A8Z7	101	151	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site			70.29	No	External	gy			
+TCGA-QK-A8Z8	157	157	Treatment	Chemotherapy		Docetaxel											No			No										
+TCGA-QK-A8Z8	157	157	Treatment	Chemotherapy		Cisplatin											No			No										
+TCGA-QK-A8Z8	157	157	Treatment	Chemotherapy		Fluorouracil											No			No										
+TCGA-QK-A8Z9	50	102	Treatment	Chemotherapy		Carboplatin							complete response				No			No										
+TCGA-QK-A8Z9	50	102	Treatment	Chemotherapy		Paclitaxel							complete response				No			No										
+TCGA-QK-A8Z9	267	302	Treatment	Chemotherapy		Carboplatin											No			No										
+TCGA-QK-A8Z9	267	302	Treatment	Chemotherapy		Paclitaxel											No			No										
+TCGA-QK-A8Z9	49	99	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	60.06	No	External	gy			
+TCGA-QK-A8Z9	49	99	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		33	66	No	External	gy			
+TCGA-QK-A8Z9	49	99	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		33	56.1	No	External	gy			
+TCGA-QK-A8Z9	268	310	Treatment	Radiation Therapy		Radiation 4															Distant Site		28	50.4	No	External	gy			
+TCGA-QK-A8ZA	71	118	Treatment	Chemotherapy		Cisplatin											No			No										
+TCGA-QK-A8ZA	71	135	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		35	70	No	External	gy			
+TCGA-QK-A8ZA	71	135	Treatment	Radiation Therapy		Radiation 2															Regional Site		35	63	No	External	gy			
+TCGA-QK-A8ZA	71	135	Treatment	Radiation Therapy		Radiation 3															Regional Site		35	56	No	External	gy			
+TCGA-QK-A8ZB	45	95	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	60	No	External	gy			
+TCGA-QK-A8ZB	45	95	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		30	55.82	No	External	gy			
+TCGA-QK-A8ZB	45	95	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		30	55.82	No	External	gy			
+TCGA-QK-AA3J	56	106	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	70	No	External	gy			
+TCGA-QK-AA3J	56	106	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		35	54	No	External	gy			
+TCGA-QK-AA3J	56	106	Treatment	Radiation Therapy		Radiation 3							complete response								Regional Site		35	54	No	External	gy			
+TCGA-QK-AA3K	120	145	Treatment	Chemotherapy		Cisplatin											No			No										
+TCGA-QK-AA3K	48	145	Treatment	Radiation Therapy		Radiation 1															Primary Tumor Field		30	66	No	External	gy			
+TCGA-QK-AA3K	48	145	Treatment	Radiation Therapy		Radiation 2															Regional Site		30	60	No	External	gy			
+TCGA-QK-AA3K	48	145	Treatment	Radiation Therapy		Radiation 3															Regional Site		30	60	No	External	gy			
+TCGA-RS-A6TO	41	41	Treatment	Immunotherapy		Cetuximab							complete response				No			No										
+TCGA-RS-A6TO	48	94	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		35	7000	No	External	cgy			
+TCGA-T2-A6WX	71	92	Treatment	Chemotherapy		Carboplatin							clinical progressive disease				No			No										
+TCGA-T2-A6WX	71	92	Treatment	Chemotherapy		Paclitaxel							clinical progressive disease				No			No										
+TCGA-T2-A6WX	71	92	Treatment	Chemotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-T2-A6WX	71	128	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Primary Tumor Field		33	6996	No	External	cgy			
+TCGA-T2-A6WX	71	128	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Regional Site				No	External				
+TCGA-T2-A6WZ	247	303	Treatment	Targeted Molecular Therapy		Sonolisib							stable disease	pi3k inhibitor			No			Yes										
+TCGA-T2-A6WZ	247	303	Treatment	Chemotherapy		Docetaxel							stable disease				No			Yes										
+TCGA-T2-A6WZ	128	163	Treatment	Chemotherapy		Cetuximab							clinical progressive disease				No			No										
+TCGA-T2-A6WZ	139	170	Treatment	Radiation Therapy		Radiation 1							radiographic progressive disease								Regional Site			6000	No	External	cgy			
+TCGA-T2-A6WZ	139	170	Treatment	Radiation Therapy		Radiation 2							radiographic progressive disease								Primary Tumor Field			6000	No	External	cgy			
+TCGA-T2-A6X0	60	95	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-T2-A6X0	63	99	Treatment	Radiation Therapy		Radiation 1							complete response								Regional Site			66	No	External	gy			
+TCGA-T2-A6X0	63	99	Treatment	Radiation Therapy		Radiation 2							complete response								Primary Tumor Field			66	No	External	gy			
+TCGA-TN-A7HI	66	117	Treatment	Radiation Therapy		Radiation 1							complete response										37	6600	No	External	cgy			
+TCGA-TN-A7HJ	31	92	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-TN-A7HJ	43	98	Treatment	Radiation Therapy		Radiation 1							complete response								Regional Site		33	6600	No	External	cgy			
+TCGA-TN-A7HL	35	62	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-TN-A7HL	35	77	Treatment	Radiation Therapy		Radiation 1							complete response										30	6000	No	External	cgy			
+TCGA-UF-A71B	212	269	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		32	6400	No	External	cgy			
+TCGA-UF-A71B	212	269	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A71D	155	211	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-UF-A71D	155	203	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A71E	229	276	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-UF-A71E	229	266	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7J9	172	222	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-UF-A7J9	172	215	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7JA	281	347	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		34	6120	No	External	cgy			
+TCGA-UF-A7JA	281	338	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		28	5040	No	External	cgy			
+TCGA-UF-A7JC	131	173	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-UF-A7JC	132	173	Treatment	Radiation Therapy		Radiation 1							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7JC	132	187	Treatment	Radiation Therapy		Radiation 2							complete response								Primary Tumor Field		33	6400	No	External	cgy			
+TCGA-UF-A7JD	224	280	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-UF-A7JD	224	265	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7JF	71	86	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-UF-A7JF	56	125	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		33	6600	No	External	cgy			
+TCGA-UF-A7JF	56	111	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7JH	102	151	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-UF-A7JH	102	140	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7JJ	60	102	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-UF-A7JJ	59	107	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-UF-A7JJ	59	100	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7JK	132	174	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-UF-A7JK	127		Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		32	6400	No	External	cgy			
+TCGA-UF-A7JK	127	181	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5600	No	External	cgy			
+TCGA-UF-A7JO	214	265	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		34	6120	No	External	cgy			
+TCGA-UF-A7JO	214	250	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	4500	No	External	cgy			
+TCGA-UF-A7JS	95	144	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		30	6000	No	External	cgy			
+TCGA-UF-A7JS	95	134	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		25	5000	No	External	cgy			
+TCGA-UF-A7JT	173	229	Treatment	Chemotherapy		Cisplatin							complete response				No			No										
+TCGA-UF-A7JT	176	229	Treatment	Radiation Therapy		Radiation 1							complete response								Primary Tumor Field		34	6120	No	External	cgy			
+TCGA-UF-A7JT	176	221	Treatment	Radiation Therapy		Radiation 2							complete response								Regional Site		28	5040	No	External	cgy			
+TCGA-UP-A6WW	61	123	Treatment	Radiation Therapy		Radiation 1							partial response								Primary Tumor Field		33	66	No	External	gy			

meta_armlevel_cna.txt

@@ -0,0 +1,10 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: ARMLEVEL_CNA
+datatype: CATEGORICAL
+stable_id: armlevel_cna
+profile_name: Putative arm-level copy-number from GISTIC
+profile_description: Putative arm-level copy-number from GISTIC 2.0.
+data_filename: data_armlevel_cna.txt
+show_profile_in_analysis_tab: true
+generic_entity_meta_properties: NAME,DESCRIPTION

meta_clinical_patient.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: CLINICAL
+datatype: PATIENT_ATTRIBUTES
+data_filename: data_clinical_patient.txt

meta_clinical_sample.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: CLINICAL
+datatype: SAMPLE_ATTRIBUTES
+data_filename: data_clinical_sample.txt

meta_cna.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: DISCRETE
+stable_id: gistic
+show_profile_in_analysis_tab: true
+profile_description: Putative copy-number from GISTIC 2.0. Values: -2 = homozygous deletion; -1 = hemizygous deletion; 0 = neutral / no change; 1 = gain; 2 = high level amplification.
+profile_name: Putative copy-number alterations from GISTIC
+data_filename: data_cna.txt

meta_cna_hg19_seg.txt

@@ -0,0 +1,9 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: SEG
+stable_id: hnsc_tcga_pan_can_atlas_2018_segment
+show_profile_in_analysis_tab: false
+description: Segment data for the TCGA PanCanAtlas study.
+profile_name: Segment data values
+reference_genome_id: hg19
+data_filename: data_cna_hg19.seg

meta_gene_panel_matrix.txt

@@ -0,0 +1,4 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENE_PANEL_MATRIX
+datatype: GENE_PANEL_MATRIX
+data_filename: data_gene_panel_matrix.txt

meta_genetic_ancestry.txt

@@ -0,0 +1,11 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: GENETIC_ANCESTRY
+datatype: LIMIT-VALUE
+stable_id: genetic_ancestry
+profile_name: Genetic Ancestry
+profile_description: Genetic ancestries were determined using five different methods as described in Carrot-Zhang et al (2020). These consensus calls were created based on the ancestral population that received the majority of assignments for each patient. The original data is <a href="https://gdc.cancer.gov/about-data/publications/CCG-AIM-2020">here</a>.
+data_filename: data_genetic_ancestry.txt
+show_profile_in_analysis_tab: true
+generic_entity_meta_properties: NAME
+value_sort_order: ASC

meta_log2_cna.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: COPY_NUMBER_ALTERATION
+datatype: LOG2-VALUE
+stable_id: log2CNA
+show_profile_in_analysis_tab: false
+profile_description: Log2 copy-number values for each gene (from Affymetrix SNP6).
+profile_name: Log2 copy-number values
+data_filename: data_log2_cna.txt

meta_methylation_hm27_hm450_merged.txt

@@ -0,0 +1,11 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: METHYLATION
+datatype: LIMIT-VALUE
+stable_id: methylation_hm27_hm450_merge
+profile_name: Methylation (HM27 and HM450 merge)
+profile_description: Methylation between-platform (hm27 and hm450) normalization values.
+data_filename: data_methylation_hm27_hm450_merged.txt
+show_profile_in_analysis_tab: true
+value_sort_order: DESC
+generic_entity_meta_properties: NAME,DESCRIPTION,TRANSCRIPT_ID

meta_microbiome.txt

@@ -0,0 +1,12 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: GENERIC_ASSAY
+generic_assay_type: MICROBIOME_SIGNATURE
+datatype: LIMIT-VALUE
+stable_id: microbiome_signature
+profile_name: Microbiome Signatures (log RNA Seq CPM)
+profile_description: Microbial Signatures (log-cpm) from whole-transcriptome sequencing studies of TCGA (Poore et al. Nature 2020).
+data_filename: data_microbiome.txt
+show_profile_in_analysis_tab: true
+pivot_threshold_value: 0
+value_sort_order: ASC
+generic_entity_meta_properties: NAME,DESCRIPTION,URL

meta_mrna_seq_v2_rsem.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+stable_id: rna_seq_v2_mrna
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: CONTINUOUS
+show_profile_in_analysis_tab: FALSE
+profile_name: mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
+profile_description:mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
+data_filename: data_mrna_seq_v2_rsem.txt

meta_mrna_seq_v2_rsem_zscores_ref_all_samples.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+stable_id: rna_seq_v2_mrna_median_all_sample_Zscores
+show_profile_in_analysis_tab: TRUE
+profile_name: mRNA expression z-scores relative to all samples (log RNA Seq V2 RSEM)
+profile_description: Log-transformed mRNA expression z-scores compared to the expression distribution of all samples (RNA Seq V2 RSEM).
+data_filename: data_mrna_seq_v2_rsem_zscores_ref_all_samples.txt

meta_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+data_filename: data_mrna_seq_v2_rsem_zscores_ref_diploid_samples.txt
+stable_id: rna_seq_v2_mrna_median_Zscores
+show_profile_in_analysis_tab: TRUE
+profile_description: mRNA expression z-scores (RNA Seq V2 RSEM) compared to the expression distribution of each gene tumors that are diploid for this gene.
+profile_name: mRNA expression z-scores relative to diploid samples (RNA Seq V2 RSEM)

meta_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MRNA_EXPRESSION
+datatype: Z-SCORE
+stable_id: rna_seq_v2_mrna_median_all_sample_ref_normal_Zscores
+show_profile_in_analysis_tab: TRUE
+profile_name: mRNA expression z-scores relative to normal samples (log RNA Seq V2 RSEM)
+profile_description: Expression z-scores of tumor samples compared to the expression distribution of all log-transformed mRNA expression of adjacent normal samples in the cohort.
+data_filename: data_mrna_seq_v2_rsem_zscores_ref_normal_samples.txt

meta_mutations.txt

@@ -0,0 +1,8 @@
+cancer_study_identifier: hnsc_tcga_pan_can_atlas_2018
+genetic_alteration_type: MUTATION_EXTENDED
+datatype: MAF
+stable_id: mutations
+show_profile_in_analysis_tab: true
+profile_description: Mutation data from whole exome sequencing of 523 Head and Neck Squamous Cell Carcinoma samples.
+profile_name: Mutations
+data_filename: data_mutations.txt