TomTBT commited on
Commit
c7c0b81
1 Parent(s): 3675966

Stream mode FileNotFound exception handling

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Files changed (1) hide show
  1. pmc_open_access_xml.py +4 -1
pmc_open_access_xml.py CHANGED
@@ -533,7 +533,10 @@ class OpenAccessXML(datasets.GeneratorBasedBuilder):
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  # Incrementals
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  if incremental_file_lists:
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  for incremental_file_list, incremental_archive in zip(incremental_file_lists[::-1], incremental_archives[::-1]):
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- incrementals = pd.read_csv(incremental_file_list, index_col="AccessionID")
 
 
 
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  incrementals = incrementals.join(oa_package_list).reset_index().set_index("Article File")
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  incrementals.File = incrementals.File.fillna('')
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  incrementals = incrementals.to_dict(orient="index")
 
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  # Incrementals
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  if incremental_file_lists:
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  for incremental_file_list, incremental_archive in zip(incremental_file_lists[::-1], incremental_archives[::-1]):
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+ try:
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+ incrementals = pd.read_csv(incremental_file_list, index_col="AccessionID")
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+ except FileNotFoundError: # File not found can happen here in stream mode
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+ continue
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  incrementals = incrementals.join(oa_package_list).reset_index().set_index("Article File")
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  incrementals.File = incrementals.File.fillna('')
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  incrementals = incrementals.to_dict(orient="index")