Add batch 191
Browse filesThis view is limited to 50 files because it contains too many changes. See raw diff
- 1b9t/1b9t_ligand.mol2 +99 -0
- 1b9t/1b9t_ligand.sdf +89 -0
- 1b9t/1b9t_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1b9t/1b9t_protein_processed_fix.pdb +0 -0
- 1il5/1il5_ligand.mol2 +48 -0
- 1il5/1il5_ligand.sdf +38 -0
- 1il5/1il5_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1il5/1il5_protein_processed_fix.pdb +0 -0
- 1ind/1ind_ligand.mol2 +136 -0
- 1ind/1ind_ligand.sdf +134 -0
- 1ind/1ind_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1ind/1ind_protein_processed_fix.pdb +0 -0
- 1jaq/1jaq_ligand.mol2 +101 -0
- 1jaq/1jaq_ligand.sdf +91 -0
- 1jaq/1jaq_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1jaq/1jaq_protein_processed_fix.pdb +0 -0
- 1lst/1lst_ligand.mol2 +65 -0
- 1lst/1lst_ligand.sdf +57 -0
- 1lst/1lst_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1lst/1lst_protein_processed_fix.pdb +0 -0
- 1nhu/1nhu_ligand.mol2 +118 -0
- 1nhu/1nhu_ligand.sdf +110 -0
- 1nhu/1nhu_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1nhu/1nhu_protein_processed_fix.pdb +0 -0
- 1p6d/1p6d_ligand.mol2 +159 -0
- 1p6d/1p6d_ligand.sdf +151 -0
- 1p6d/1p6d_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1p6d/1p6d_protein_processed_fix.pdb +0 -0
- 1tcw/1tcw_ligand.mol2 +180 -0
- 1tcw/1tcw_ligand.sdf +168 -0
- 1tcw/1tcw_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1tcw/1tcw_protein_processed_fix.pdb +0 -0
- 1thz/1thz_ligand.mol2 +110 -0
- 1thz/1thz_ligand.sdf +106 -0
- 1thz/1thz_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1thz/1thz_protein_processed_fix.pdb +0 -0
- 1xpc/1xpc_ligand.mol2 +146 -0
- 1xpc/1xpc_ligand.sdf +136 -0
- 1xpc/1xpc_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1xpc/1xpc_protein_processed_fix.pdb +0 -0
- 1y6a/1y6a_ligand.mol2 +123 -0
- 1y6a/1y6a_ligand.sdf +113 -0
- 1y6a/1y6a_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1y6a/1y6a_protein_processed_fix.pdb +0 -0
- 1ymx/1ymx_ligand.mol2 +99 -0
- 1ymx/1ymx_ligand.sdf +91 -0
- 1ymx/1ymx_protein_esmfold_aligned_tr_fix.pdb +0 -0
- 1ymx/1ymx_protein_processed_fix.pdb +0 -0
- 2ay2/2ay2_ligand.mol2 +68 -0
- 2ay2/2ay2_ligand.sdf +60 -0
1b9t/1b9t_ligand.mol2
ADDED
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@@ -0,0 +1,99 @@
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| 1 |
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###
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| 2 |
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### Created by X-TOOL on Mon Sep 10 21:12:47 2018
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###
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@<TRIPOS>MOLECULE
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| 6 |
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1b9t_ligand
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| 7 |
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41 42 1 0 0
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| 8 |
+
SMALL
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| 9 |
+
GAST_HUCK
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| 10 |
+
|
| 11 |
+
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| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 33.8350 -9.7190 64.6050 C.ar 1 RAI 0.0291
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| 14 |
+
2 C2 32.5300 -9.4640 64.0870 C.ar 1 RAI 0.2209
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| 15 |
+
3 C3 31.4600 -10.3440 64.4570 C.ar 1 RAI 0.1756
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| 16 |
+
4 C4 31.7010 -11.4430 65.3090 C.ar 1 RAI 0.0274
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| 17 |
+
5 C5 32.9860 -11.7000 65.8150 C.ar 1 RAI 0.0406
|
| 18 |
+
6 C6 34.0630 -10.8250 65.4590 C.ar 1 RAI -0.0163
|
| 19 |
+
7 C10 33.2090 -12.8620 66.6940 C.2 1 RAI 0.0819
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| 20 |
+
8 O11 32.1250 -13.6200 66.9520 O.co2 1 RAI -0.5534
|
| 21 |
+
9 N12 30.1790 -10.1610 64.0130 N.pl3 1 RAI -0.2608
|
| 22 |
+
10 C13 29.2990 -11.0450 63.5120 C.cat 1 RAI 0.1480
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| 23 |
+
11 N14 29.7330 -12.1730 62.9090 N.pl3 1 RAI -0.3533
|
| 24 |
+
12 N15 32.2740 -8.3760 63.2370 N.am 1 RAI -0.1364
|
| 25 |
+
13 C16 32.4450 -8.3520 61.7310 C.3 1 RAI 0.1643
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| 26 |
+
14 C17 32.2020 -6.8470 61.4010 C.3 1 RAI 0.0133
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| 27 |
+
15 C18 31.5800 -6.1860 62.6270 C.3 1 RAI 0.0637
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| 28 |
+
16 C19 31.7990 -7.1960 63.7300 C.2 1 RAI 0.2726
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| 29 |
+
17 C24 31.3670 -9.2380 61.0210 C.3 1 RAI 0.0891
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| 30 |
+
18 O25 31.6700 -9.4450 59.6410 O.3 1 RAI -0.3906
|
| 31 |
+
19 C28 33.8760 -8.8440 61.2880 C.3 1 RAI 0.0891
|
| 32 |
+
20 O29 34.4430 -7.9650 60.3610 O.3 1 RAI -0.3906
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| 33 |
+
21 O32 34.2810 -13.1100 67.1400 O.co2 1 RAI -0.5534
|
| 34 |
+
22 N33 27.9970 -10.7800 63.6210 N.pl3 1 RAI -0.3533
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| 35 |
+
23 O34 31.5580 -6.9480 64.9060 O.2 1 RAI -0.3427
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| 36 |
+
24 H1 34.6565 -9.0621 64.3431 H 1 RAI 0.0750
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| 37 |
+
25 H2 30.8812 -12.0995 65.5773 H 1 RAI 0.0688
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| 38 |
+
26 H3 35.0585 -11.0108 65.8458 H 1 RAI 0.0777
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| 39 |
+
27 H4 29.8342 -9.1922 64.0720 H 1 RAI 0.2213
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| 40 |
+
28 H5 29.0540 -12.8467 62.5270 H 1 RAI 0.1652
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| 41 |
+
29 H6 30.7430 -12.3595 62.8312 H 1 RAI 0.1652
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| 42 |
+
30 H7 31.5187 -6.7592 60.5435 H 1 RAI 0.0334
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| 43 |
+
31 H8 33.1580 -6.3594 61.1596 H 1 RAI 0.0334
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| 44 |
+
32 H9 30.5067 -6.0022 62.4712 H 1 RAI 0.0525
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| 45 |
+
33 H10 32.0847 -5.2366 62.8590 H 1 RAI 0.0525
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| 46 |
+
34 H11 30.3897 -8.7393 61.0992 H 1 RAI 0.0601
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| 47 |
+
35 H12 31.3217 -10.2146 61.5251 H 1 RAI 0.0601
|
| 48 |
+
36 H13 32.5106 -9.8809 59.5644 H 1 RAI 0.2096
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| 49 |
+
37 H14 33.7883 -9.8409 60.8314 H 1 RAI 0.0601
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| 50 |
+
38 H15 34.5265 -8.9020 62.1732 H 1 RAI 0.0601
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| 51 |
+
39 H16 33.8863 -7.9143 59.5928 H 1 RAI 0.2096
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| 52 |
+
40 H17 27.6846 -9.9147 64.0841 H 1 RAI 0.1652
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| 53 |
+
41 H18 27.3035 -11.4406 63.2421 H 1 RAI 0.1652
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| 54 |
+
@<TRIPOS>BOND
|
| 55 |
+
1 1 6 ar
|
| 56 |
+
2 1 2 ar
|
| 57 |
+
3 2 12 1
|
| 58 |
+
4 2 3 ar
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| 59 |
+
5 3 9 1
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| 60 |
+
6 3 4 ar
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| 61 |
+
7 4 5 ar
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| 62 |
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8 5 7 1
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| 63 |
+
9 6 5 ar
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| 64 |
+
10 7 21 ar
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| 65 |
+
11 7 8 ar
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| 66 |
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12 9 10 ar
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| 67 |
+
13 10 22 ar
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| 68 |
+
14 10 11 ar
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| 69 |
+
15 12 16 am
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| 70 |
+
16 12 13 1
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| 71 |
+
17 13 19 1
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| 72 |
+
18 13 17 1
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| 73 |
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19 13 14 1
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| 74 |
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20 14 15 1
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| 75 |
+
21 15 16 1
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| 76 |
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22 16 23 2
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| 77 |
+
23 17 18 1
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| 78 |
+
24 19 20 1
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| 79 |
+
25 1 24 1
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| 80 |
+
26 4 25 1
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| 81 |
+
27 6 26 1
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| 82 |
+
28 9 27 1
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| 83 |
+
29 11 28 1
|
| 84 |
+
30 11 29 1
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| 85 |
+
31 14 30 1
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| 86 |
+
32 14 31 1
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| 87 |
+
33 15 32 1
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| 88 |
+
34 15 33 1
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| 89 |
+
35 17 34 1
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| 90 |
+
36 17 35 1
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| 91 |
+
37 18 36 1
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| 92 |
+
38 19 37 1
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| 93 |
+
39 19 38 1
|
| 94 |
+
40 20 39 1
|
| 95 |
+
41 22 40 1
|
| 96 |
+
42 22 41 1
|
| 97 |
+
@<TRIPOS>SUBSTRUCTURE
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| 98 |
+
1 RAI 1
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| 99 |
+
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1b9t/1b9t_ligand.sdf
ADDED
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@@ -0,0 +1,89 @@
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| 1 |
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1b9t_ligand
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| 2 |
+
-I-interpret-
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| 3 |
+
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| 4 |
+
41 42 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
33.8350 -9.7190 64.6050 C 0 0 0 0 0
|
| 6 |
+
32.5300 -9.4640 64.0870 C 0 0 0 0 0
|
| 7 |
+
31.4600 -10.3440 64.4570 C 0 0 0 0 0
|
| 8 |
+
31.7010 -11.4430 65.3090 C 0 0 0 0 0
|
| 9 |
+
32.9860 -11.7000 65.8150 C 0 0 0 0 0
|
| 10 |
+
34.0630 -10.8250 65.4590 C 0 0 0 0 0
|
| 11 |
+
33.2090 -12.8620 66.6940 C 0 0 0 0 0
|
| 12 |
+
32.1250 -13.6200 66.9520 O 0 0 0 0 0
|
| 13 |
+
30.1790 -10.1610 64.0130 N 0 0 0 0 0
|
| 14 |
+
29.2990 -11.0450 63.5120 C 0 0 0 0 0
|
| 15 |
+
29.7330 -12.1730 62.9090 N 0 0 0 0 0
|
| 16 |
+
32.2740 -8.3760 63.2370 N 0 0 0 0 0
|
| 17 |
+
32.4450 -8.3520 61.7310 C 0 0 0 0 0
|
| 18 |
+
32.2020 -6.8470 61.4010 C 0 0 0 0 0
|
| 19 |
+
31.5800 -6.1860 62.6270 C 0 0 0 0 0
|
| 20 |
+
31.7990 -7.1960 63.7300 C 0 0 0 0 0
|
| 21 |
+
31.3670 -9.2380 61.0210 C 0 0 0 0 0
|
| 22 |
+
31.6700 -9.4450 59.6410 O 0 0 0 0 0
|
| 23 |
+
33.8760 -8.8440 61.2880 C 0 0 0 0 0
|
| 24 |
+
34.4430 -7.9650 60.3610 O 0 0 0 0 0
|
| 25 |
+
34.2810 -13.1100 67.1400 O 0 0 0 0 0
|
| 26 |
+
27.9970 -10.7800 63.6210 N 0 0 0 0 0
|
| 27 |
+
31.5580 -6.9480 64.9060 O 0 0 0 0 0
|
| 28 |
+
34.6611 -9.0584 64.3417 H 0 0 0 0 0
|
| 29 |
+
30.8766 -12.1031 65.5788 H 0 0 0 0 0
|
| 30 |
+
35.0640 -11.0118 65.8479 H 0 0 0 0 0
|
| 31 |
+
31.3629 -13.2511 66.4996 H 0 0 0 0 0
|
| 32 |
+
29.8375 -9.2016 64.0714 H 0 0 0 0 0
|
| 33 |
+
29.0606 -12.8386 62.5279 H 0 0 0 0 0
|
| 34 |
+
30.7331 -12.3592 62.8347 H 0 0 0 0 0
|
| 35 |
+
31.5338 -6.7538 60.5449 H 0 0 0 0 0
|
| 36 |
+
33.1449 -6.3609 61.1504 H 0 0 0 0 0
|
| 37 |
+
30.5255 -5.9512 62.4822 H 0 0 0 0 0
|
| 38 |
+
32.0321 -5.2202 62.8524 H 0 0 0 0 0
|
| 39 |
+
30.4073 -8.7253 61.0863 H 0 0 0 0 0
|
| 40 |
+
31.3449 -10.2095 61.5148 H 0 0 0 0 0
|
| 41 |
+
30.9878 -9.9908 59.2431 H 0 0 0 0 0
|
| 42 |
+
33.7804 -9.8263 60.8254 H 0 0 0 0 0
|
| 43 |
+
34.5187 -8.8873 62.1673 H 0 0 0 0 0
|
| 44 |
+
35.3116 -8.2856 60.1075 H 0 0 0 0 0
|
| 45 |
+
27.6877 -9.9216 64.0769 H 0 0 0 0 0
|
| 46 |
+
1 6 4 0 0 0
|
| 47 |
+
1 2 4 0 0 0
|
| 48 |
+
2 12 1 0 0 0
|
| 49 |
+
2 3 4 0 0 0
|
| 50 |
+
3 9 1 0 0 0
|
| 51 |
+
3 4 4 0 0 0
|
| 52 |
+
4 5 4 0 0 0
|
| 53 |
+
5 7 1 0 0 0
|
| 54 |
+
6 5 4 0 0 0
|
| 55 |
+
7 21 2 0 0 0
|
| 56 |
+
7 8 1 0 0 0
|
| 57 |
+
9 10 1 0 0 0
|
| 58 |
+
10 22 2 0 0 0
|
| 59 |
+
10 11 1 0 0 0
|
| 60 |
+
12 16 1 0 0 0
|
| 61 |
+
12 13 1 0 0 0
|
| 62 |
+
13 19 1 0 0 0
|
| 63 |
+
13 17 1 0 0 0
|
| 64 |
+
13 14 1 0 0 0
|
| 65 |
+
14 15 1 0 0 0
|
| 66 |
+
15 16 1 0 0 0
|
| 67 |
+
16 23 2 0 0 0
|
| 68 |
+
17 18 1 0 0 0
|
| 69 |
+
19 20 1 0 0 0
|
| 70 |
+
1 24 1 0 0 0
|
| 71 |
+
4 25 1 0 0 0
|
| 72 |
+
6 26 1 0 0 0
|
| 73 |
+
8 27 1 0 0 0
|
| 74 |
+
9 28 1 0 0 0
|
| 75 |
+
11 29 1 0 0 0
|
| 76 |
+
11 30 1 0 0 0
|
| 77 |
+
14 31 1 0 0 0
|
| 78 |
+
14 32 1 0 0 0
|
| 79 |
+
15 33 1 0 0 0
|
| 80 |
+
15 34 1 0 0 0
|
| 81 |
+
17 35 1 0 0 0
|
| 82 |
+
17 36 1 0 0 0
|
| 83 |
+
18 37 1 0 0 0
|
| 84 |
+
19 38 1 0 0 0
|
| 85 |
+
19 39 1 0 0 0
|
| 86 |
+
20 40 1 0 0 0
|
| 87 |
+
22 41 1 0 0 0
|
| 88 |
+
M END
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| 89 |
+
$$$$
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1b9t/1b9t_protein_esmfold_aligned_tr_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1b9t/1b9t_protein_processed_fix.pdb
ADDED
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The diff for this file is too large to render.
See raw diff
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1il5/1il5_ligand.mol2
ADDED
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1il5_ligand
|
| 7 |
+
16 16 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C5 -15.3050 36.1340 39.5680 C.ar 1 DDP 0.1315
|
| 14 |
+
2 N7 -14.8540 36.4110 38.2670 N.pl3 1 DDP -0.3411
|
| 15 |
+
3 C4 -14.4380 35.8540 40.6410 C.ar 1 DDP 0.1718
|
| 16 |
+
4 N3 -14.9550 35.5940 41.8670 N.ar 1 DDP -0.2589
|
| 17 |
+
5 C2 -16.2850 35.5970 42.0880 C.ar 1 DDP 0.1488
|
| 18 |
+
6 N2 -16.7830 35.3220 43.3700 N.pl3 1 DDP -0.3150
|
| 19 |
+
7 N1 -17.1340 35.8660 41.0640 N.ar 1 DDP -0.2589
|
| 20 |
+
8 C6 -16.6840 36.1350 39.8150 C.ar 1 DDP 0.1718
|
| 21 |
+
9 O6 -17.5110 36.3600 38.9720 O.3 1 DDP -0.3194
|
| 22 |
+
10 O9 -13.0580 35.8410 40.4570 O.3 1 DDP -0.3194
|
| 23 |
+
11 H1 -13.8446 36.4158 38.0619 H 1 DDP 0.1641
|
| 24 |
+
12 H2 -15.5326 36.6094 37.5180 H 1 DDP 0.1641
|
| 25 |
+
13 H3 -16.1327 35.1187 44.1424 H 1 DDP 0.1784
|
| 26 |
+
14 H4 -17.7990 35.3234 43.5390 H 1 DDP 0.1784
|
| 27 |
+
15 H5 -18.0819 35.6061 38.8808 H 1 DDP 0.2519
|
| 28 |
+
16 H6 -12.8587 36.0407 39.5498 H 1 DDP 0.2519
|
| 29 |
+
@<TRIPOS>BOND
|
| 30 |
+
1 1 2 1
|
| 31 |
+
2 1 3 ar
|
| 32 |
+
3 1 8 ar
|
| 33 |
+
4 3 4 ar
|
| 34 |
+
5 3 10 1
|
| 35 |
+
6 4 5 ar
|
| 36 |
+
7 5 6 1
|
| 37 |
+
8 5 7 ar
|
| 38 |
+
9 7 8 ar
|
| 39 |
+
10 8 9 1
|
| 40 |
+
11 2 11 1
|
| 41 |
+
12 2 12 1
|
| 42 |
+
13 6 13 1
|
| 43 |
+
14 6 14 1
|
| 44 |
+
15 9 15 1
|
| 45 |
+
16 10 16 1
|
| 46 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 47 |
+
1 DDP 1
|
| 48 |
+
|
1il5/1il5_ligand.sdf
ADDED
|
@@ -0,0 +1,38 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1il5_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
16 16 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-15.3050 36.1340 39.5680 C 0 0 0 0 0
|
| 6 |
+
-14.8540 36.4110 38.2670 N 0 0 0 0 0
|
| 7 |
+
-14.4380 35.8540 40.6410 C 0 0 0 0 0
|
| 8 |
+
-14.9550 35.5940 41.8670 N 0 0 0 0 0
|
| 9 |
+
-16.2850 35.5970 42.0880 C 0 0 0 0 0
|
| 10 |
+
-16.7830 35.3220 43.3700 N 0 0 0 0 0
|
| 11 |
+
-17.1340 35.8660 41.0640 N 0 0 0 0 0
|
| 12 |
+
-16.6840 36.1350 39.8150 C 0 0 0 0 0
|
| 13 |
+
-17.5110 36.3600 38.9720 O 0 0 0 0 0
|
| 14 |
+
-13.0580 35.8410 40.4570 O 0 0 0 0 0
|
| 15 |
+
-13.8544 36.4156 38.0639 H 0 0 0 0 0
|
| 16 |
+
-15.5260 36.6076 37.5253 H 0 0 0 0 0
|
| 17 |
+
-16.1390 35.1198 44.1347 H 0 0 0 0 0
|
| 18 |
+
-17.7891 35.3242 43.5376 H 0 0 0 0 0
|
| 19 |
+
-18.3865 36.3078 39.3623 H 0 0 0 0 0
|
| 20 |
+
-12.6273 35.6334 41.2894 H 0 0 0 0 0
|
| 21 |
+
1 2 1 0 0 0
|
| 22 |
+
1 3 4 0 0 0
|
| 23 |
+
1 8 4 0 0 0
|
| 24 |
+
3 4 4 0 0 0
|
| 25 |
+
3 10 1 0 0 0
|
| 26 |
+
4 5 4 0 0 0
|
| 27 |
+
5 6 1 0 0 0
|
| 28 |
+
5 7 4 0 0 0
|
| 29 |
+
7 8 4 0 0 0
|
| 30 |
+
8 9 1 0 0 0
|
| 31 |
+
2 11 1 0 0 0
|
| 32 |
+
2 12 1 0 0 0
|
| 33 |
+
6 13 1 0 0 0
|
| 34 |
+
6 14 1 0 0 0
|
| 35 |
+
9 15 1 0 0 0
|
| 36 |
+
10 16 1 0 0 0
|
| 37 |
+
M END
|
| 38 |
+
$$$$
|
1il5/1il5_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1il5/1il5_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ind/1ind_ligand.mol2
ADDED
|
@@ -0,0 +1,136 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1ind_ligand
|
| 7 |
+
60 60 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C15 61.6180 1.3390 37.4210 C.ar 1 EOT 0.0661
|
| 14 |
+
2 C16 60.9970 2.4350 38.0310 C.ar 1 EOT -0.0451
|
| 15 |
+
3 C17 59.9180 2.2660 38.8940 C.ar 1 EOT -0.0720
|
| 16 |
+
4 C12 59.4470 0.9830 39.1620 C.ar 1 EOT -0.0512
|
| 17 |
+
5 C13 60.0610 -0.1080 38.5600 C.ar 1 EOT -0.0720
|
| 18 |
+
6 C14 61.1320 0.0680 37.6960 C.ar 1 EOT -0.0451
|
| 19 |
+
7 N3 62.6520 1.4380 36.5750 N.am 1 EOT -0.2356
|
| 20 |
+
8 C18 63.8050 2.0520 36.8620 C.2 1 EOT 0.1609
|
| 21 |
+
9 S1 64.1550 2.6720 38.3770 S.2 1 EOT -0.2981
|
| 22 |
+
10 N4 64.6880 2.1430 35.8780 N.am 1 EOT -0.2767
|
| 23 |
+
11 C19 65.9650 2.8440 36.0550 C.3 1 EOT 0.0600
|
| 24 |
+
12 C20 66.3530 3.5290 34.7390 C.3 1 EOT 0.0660
|
| 25 |
+
13 O9 67.6080 4.1680 34.9190 O.3 1 EOT -0.3928
|
| 26 |
+
14 C11 58.3030 0.7790 40.0730 C.3 1 EOT 0.0227
|
| 27 |
+
15 C1 56.9020 1.0440 39.4940 C.3 1 EOT 0.0304
|
| 28 |
+
16 C2 56.4870 -0.1220 38.5490 C.3 1 EOT 0.0166
|
| 29 |
+
17 N1 55.8850 1.1730 40.5680 N.4 1 EOT 0.2654
|
| 30 |
+
18 C9 55.9110 2.4720 41.2660 C.3 1 EOT 0.0231
|
| 31 |
+
19 C10 55.4600 3.6140 40.3650 C.2 1 EOT 0.0813
|
| 32 |
+
20 O7 54.5060 3.2880 39.4710 O.co2 1 EOT -0.5645
|
| 33 |
+
21 O8 55.9870 4.7200 40.4260 O.co2 1 EOT -0.5645
|
| 34 |
+
22 C7 55.9170 0.0200 41.4600 C.3 1 EOT 0.0231
|
| 35 |
+
23 C8 54.6780 0.0350 42.3430 C.2 1 EOT 0.0813
|
| 36 |
+
24 O5 53.6000 0.6140 41.7730 O.co2 1 EOT -0.5645
|
| 37 |
+
25 O6 54.7110 -0.3880 43.4970 O.co2 1 EOT -0.5645
|
| 38 |
+
26 N2 55.1520 0.0110 37.9400 N.4 1 EOT 0.2624
|
| 39 |
+
27 C5 54.6750 -1.3530 37.6030 C.3 1 EOT 0.0227
|
| 40 |
+
28 C6 53.3180 -1.7070 38.2250 C.2 1 EOT 0.0813
|
| 41 |
+
29 O3 52.9780 -1.0160 39.3240 O.co2 1 EOT -0.5645
|
| 42 |
+
30 O4 52.6100 -2.5970 37.7540 O.co2 1 EOT -0.5645
|
| 43 |
+
31 C3 55.1460 0.8730 36.7330 C.3 1 EOT 0.0227
|
| 44 |
+
32 C4 53.7340 1.3060 36.3600 C.2 1 EOT 0.0813
|
| 45 |
+
33 O1 52.8470 1.2220 37.3740 O.co2 1 EOT -0.5645
|
| 46 |
+
34 O2 53.4350 1.6620 35.2190 O.co2 1 EOT -0.5645
|
| 47 |
+
35 H1 61.3634 3.4347 37.8275 H 1 EOT 0.0497
|
| 48 |
+
36 H2 59.4475 3.1272 39.3544 H 1 EOT 0.0522
|
| 49 |
+
37 H3 59.6991 -1.1085 38.7678 H 1 EOT 0.0522
|
| 50 |
+
38 H4 61.5939 -0.7954 37.2310 H 1 EOT 0.0497
|
| 51 |
+
39 H5 62.5554 1.0256 35.6691 H 1 EOT 0.2335
|
| 52 |
+
40 H6 64.4792 1.7242 34.9942 H 1 EOT 0.1978
|
| 53 |
+
41 H7 66.7449 2.1215 36.3371 H 1 EOT 0.0565
|
| 54 |
+
42 H8 65.8623 3.6006 36.8468 H 1 EOT 0.0565
|
| 55 |
+
43 H9 65.5913 4.2756 34.4702 H 1 EOT 0.0579
|
| 56 |
+
44 H10 66.4297 2.7787 33.9383 H 1 EOT 0.0579
|
| 57 |
+
45 H11 67.8622 4.5976 34.1107 H 1 EOT 0.2095
|
| 58 |
+
46 H12 58.4396 1.4490 40.9347 H 1 EOT 0.0457
|
| 59 |
+
47 H13 58.3305 -0.2666 40.4135 H 1 EOT 0.0457
|
| 60 |
+
48 H14 56.9318 1.9811 38.9188 H 1 EOT 0.0926
|
| 61 |
+
49 H15 56.5042 -1.0550 39.1314 H 1 EOT 0.0873
|
| 62 |
+
50 H16 57.2270 -0.1826 37.7374 H 1 EOT 0.0873
|
| 63 |
+
51 H17 54.9902 1.1382 40.1053 H 1 EOT 0.2068
|
| 64 |
+
52 H18 56.9380 2.6721 41.6054 H 1 EOT 0.0989
|
| 65 |
+
53 H19 55.2405 2.4207 42.1365 H 1 EOT 0.0989
|
| 66 |
+
54 H20 56.8178 0.0669 42.0896 H 1 EOT 0.0989
|
| 67 |
+
55 H21 55.9333 -0.9050 40.8650 H 1 EOT 0.0989
|
| 68 |
+
56 H22 54.5291 0.4203 38.6186 H 1 EOT 0.2064
|
| 69 |
+
57 H23 55.4201 -2.0789 37.9606 H 1 EOT 0.0989
|
| 70 |
+
58 H24 54.5851 -1.4284 36.5093 H 1 EOT 0.0989
|
| 71 |
+
59 H25 55.5814 0.3130 35.8923 H 1 EOT 0.0989
|
| 72 |
+
60 H26 55.7534 1.7685 36.9309 H 1 EOT 0.0989
|
| 73 |
+
@<TRIPOS>BOND
|
| 74 |
+
1 1 2 ar
|
| 75 |
+
2 1 6 ar
|
| 76 |
+
3 1 7 1
|
| 77 |
+
4 2 3 ar
|
| 78 |
+
5 3 4 ar
|
| 79 |
+
6 4 5 ar
|
| 80 |
+
7 4 14 1
|
| 81 |
+
8 5 6 ar
|
| 82 |
+
9 7 8 am
|
| 83 |
+
10 8 9 2
|
| 84 |
+
11 8 10 am
|
| 85 |
+
12 10 11 1
|
| 86 |
+
13 11 12 1
|
| 87 |
+
14 12 13 1
|
| 88 |
+
15 14 15 1
|
| 89 |
+
16 15 16 1
|
| 90 |
+
17 15 17 1
|
| 91 |
+
18 16 26 1
|
| 92 |
+
19 17 18 1
|
| 93 |
+
20 17 22 1
|
| 94 |
+
21 18 19 1
|
| 95 |
+
22 19 20 ar
|
| 96 |
+
23 19 21 ar
|
| 97 |
+
24 22 23 1
|
| 98 |
+
25 23 24 ar
|
| 99 |
+
26 23 25 ar
|
| 100 |
+
27 26 27 1
|
| 101 |
+
28 26 31 1
|
| 102 |
+
29 27 28 1
|
| 103 |
+
30 28 29 ar
|
| 104 |
+
31 28 30 ar
|
| 105 |
+
32 31 32 1
|
| 106 |
+
33 32 33 ar
|
| 107 |
+
34 32 34 ar
|
| 108 |
+
35 2 35 1
|
| 109 |
+
36 3 36 1
|
| 110 |
+
37 5 37 1
|
| 111 |
+
38 6 38 1
|
| 112 |
+
39 7 39 1
|
| 113 |
+
40 10 40 1
|
| 114 |
+
41 11 41 1
|
| 115 |
+
42 11 42 1
|
| 116 |
+
43 12 43 1
|
| 117 |
+
44 12 44 1
|
| 118 |
+
45 13 45 1
|
| 119 |
+
46 14 46 1
|
| 120 |
+
47 14 47 1
|
| 121 |
+
48 15 48 1
|
| 122 |
+
49 16 49 1
|
| 123 |
+
50 16 50 1
|
| 124 |
+
51 17 51 1
|
| 125 |
+
52 18 52 1
|
| 126 |
+
53 18 53 1
|
| 127 |
+
54 22 54 1
|
| 128 |
+
55 22 55 1
|
| 129 |
+
56 26 56 1
|
| 130 |
+
57 27 57 1
|
| 131 |
+
58 27 58 1
|
| 132 |
+
59 31 59 1
|
| 133 |
+
60 31 60 1
|
| 134 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 135 |
+
1 EOT 1
|
| 136 |
+
|
1ind/1ind_ligand.sdf
ADDED
|
@@ -0,0 +1,134 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1ind_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
64 64 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
61.6180 1.3390 37.4210 C 0 0 0 0 0
|
| 6 |
+
60.9970 2.4350 38.0310 C 0 0 0 0 0
|
| 7 |
+
59.9180 2.2660 38.8940 C 0 0 0 0 0
|
| 8 |
+
59.4470 0.9830 39.1620 C 0 0 0 0 0
|
| 9 |
+
60.0610 -0.1080 38.5600 C 0 0 0 0 0
|
| 10 |
+
61.1320 0.0680 37.6960 C 0 0 0 0 0
|
| 11 |
+
62.6520 1.4380 36.5750 N 0 0 0 0 0
|
| 12 |
+
63.8050 2.0520 36.8620 C 0 0 0 0 0
|
| 13 |
+
64.1550 2.6720 38.3770 S 0 0 0 0 0
|
| 14 |
+
64.6880 2.1430 35.8780 N 0 0 0 0 0
|
| 15 |
+
65.9650 2.8440 36.0550 C 0 0 0 0 0
|
| 16 |
+
66.3530 3.5290 34.7390 C 0 0 0 0 0
|
| 17 |
+
67.6080 4.1680 34.9190 O 0 0 0 0 0
|
| 18 |
+
58.3030 0.7790 40.0730 C 0 0 0 0 0
|
| 19 |
+
56.9020 1.0440 39.4940 C 0 0 0 0 0
|
| 20 |
+
56.4870 -0.1220 38.5490 C 0 0 0 0 0
|
| 21 |
+
55.8850 1.1730 40.5680 N 0 3 0 0 0
|
| 22 |
+
55.9110 2.4720 41.2660 C 0 0 0 0 0
|
| 23 |
+
55.4600 3.6140 40.3650 C 0 0 0 0 0
|
| 24 |
+
54.5060 3.2880 39.4710 O 0 0 0 0 0
|
| 25 |
+
55.9870 4.7200 40.4260 O 0 0 0 0 0
|
| 26 |
+
55.9170 0.0200 41.4600 C 0 0 0 0 0
|
| 27 |
+
54.6780 0.0350 42.3430 C 0 0 0 0 0
|
| 28 |
+
53.6000 0.6140 41.7730 O 0 0 0 0 0
|
| 29 |
+
54.7110 -0.3880 43.4970 O 0 0 0 0 0
|
| 30 |
+
55.1520 0.0110 37.9400 N 0 3 0 0 0
|
| 31 |
+
54.6750 -1.3530 37.6030 C 0 0 0 0 0
|
| 32 |
+
53.3180 -1.7070 38.2250 C 0 0 0 0 0
|
| 33 |
+
52.9780 -1.0160 39.3240 O 0 0 0 0 0
|
| 34 |
+
52.6100 -2.5970 37.7540 O 0 0 0 0 0
|
| 35 |
+
55.1460 0.8730 36.7330 C 0 0 0 0 0
|
| 36 |
+
53.7340 1.3060 36.3600 C 0 0 0 0 0
|
| 37 |
+
52.8470 1.2220 37.3740 O 0 0 0 0 0
|
| 38 |
+
53.4350 1.6620 35.2190 O 0 0 0 0 0
|
| 39 |
+
61.3654 3.4402 37.8263 H 0 0 0 0 0
|
| 40 |
+
59.4449 3.1320 39.3569 H 0 0 0 0 0
|
| 41 |
+
59.6971 -1.1140 38.7689 H 0 0 0 0 0
|
| 42 |
+
61.5965 -0.8002 37.2285 H 0 0 0 0 0
|
| 43 |
+
62.5534 1.0174 35.6510 H 0 0 0 0 0
|
| 44 |
+
64.4750 1.7158 34.9766 H 0 0 0 0 0
|
| 45 |
+
66.7381 2.1290 36.3362 H 0 0 0 0 0
|
| 46 |
+
65.8646 3.5928 36.8407 H 0 0 0 0 0
|
| 47 |
+
65.5965 4.2639 34.4640 H 0 0 0 0 0
|
| 48 |
+
66.4218 2.7904 33.9404 H 0 0 0 0 0
|
| 49 |
+
67.8648 4.6021 34.1022 H 0 0 0 0 0
|
| 50 |
+
58.4333 1.4961 40.8835 H 0 0 0 0 0
|
| 51 |
+
58.3205 -0.2764 40.3451 H 0 0 0 0 0
|
| 52 |
+
56.9482 1.9816 38.9401 H 0 0 0 0 0
|
| 53 |
+
56.4654 -1.0261 39.1574 H 0 0 0 0 0
|
| 54 |
+
57.2058 -0.1324 37.7296 H 0 0 0 0 0
|
| 55 |
+
54.9724 1.1691 40.1125 H 0 0 0 0 0
|
| 56 |
+
56.9361 2.6698 41.5791 H 0 0 0 0 0
|
| 57 |
+
55.2279 2.4168 42.1136 H 0 0 0 0 0
|
| 58 |
+
54.2405 2.3754 39.6064 H 0 0 0 0 0
|
| 59 |
+
56.8103 0.0645 42.0829 H 0 0 0 0 0
|
| 60 |
+
55.9352 -0.8972 40.8713 H 0 0 0 0 0
|
| 61 |
+
53.8115 0.8623 40.8701 H 0 0 0 0 0
|
| 62 |
+
54.5327 0.4679 38.6094 H 0 0 0 0 0
|
| 63 |
+
55.4064 -2.0590 37.9962 H 0 0 0 0 0
|
| 64 |
+
54.5573 -1.3975 36.5203 H 0 0 0 0 0
|
| 65 |
+
53.6631 -0.3731 39.5211 H 0 0 0 0 0
|
| 66 |
+
55.5627 0.3043 35.9017 H 0 0 0 0 0
|
| 67 |
+
55.7353 1.7653 36.9442 H 0 0 0 0 0
|
| 68 |
+
53.2976 0.9254 38.1681 H 0 0 0 0 0
|
| 69 |
+
1 2 4 0 0 0
|
| 70 |
+
1 6 4 0 0 0
|
| 71 |
+
1 7 1 0 0 0
|
| 72 |
+
2 3 4 0 0 0
|
| 73 |
+
3 4 4 0 0 0
|
| 74 |
+
4 5 4 0 0 0
|
| 75 |
+
4 14 1 0 0 0
|
| 76 |
+
5 6 4 0 0 0
|
| 77 |
+
7 8 1 0 0 0
|
| 78 |
+
8 9 2 0 0 0
|
| 79 |
+
8 10 1 0 0 0
|
| 80 |
+
10 11 1 0 0 0
|
| 81 |
+
11 12 1 0 0 0
|
| 82 |
+
12 13 1 0 0 0
|
| 83 |
+
14 15 1 0 0 0
|
| 84 |
+
15 16 1 0 0 0
|
| 85 |
+
15 17 1 0 0 0
|
| 86 |
+
16 26 1 0 0 0
|
| 87 |
+
17 18 1 0 0 0
|
| 88 |
+
17 22 1 0 0 0
|
| 89 |
+
18 19 1 0 0 0
|
| 90 |
+
19 20 1 0 0 0
|
| 91 |
+
19 21 2 0 0 0
|
| 92 |
+
22 23 1 0 0 0
|
| 93 |
+
23 24 1 0 0 0
|
| 94 |
+
23 25 2 0 0 0
|
| 95 |
+
26 27 1 0 0 0
|
| 96 |
+
26 31 1 0 0 0
|
| 97 |
+
27 28 1 0 0 0
|
| 98 |
+
28 29 1 0 0 0
|
| 99 |
+
28 30 2 0 0 0
|
| 100 |
+
31 32 1 0 0 0
|
| 101 |
+
32 33 1 0 0 0
|
| 102 |
+
32 34 2 0 0 0
|
| 103 |
+
2 35 1 0 0 0
|
| 104 |
+
3 36 1 0 0 0
|
| 105 |
+
5 37 1 0 0 0
|
| 106 |
+
6 38 1 0 0 0
|
| 107 |
+
7 39 1 0 0 0
|
| 108 |
+
10 40 1 0 0 0
|
| 109 |
+
11 41 1 0 0 0
|
| 110 |
+
11 42 1 0 0 0
|
| 111 |
+
12 43 1 0 0 0
|
| 112 |
+
12 44 1 0 0 0
|
| 113 |
+
13 45 1 0 0 0
|
| 114 |
+
14 46 1 0 0 0
|
| 115 |
+
14 47 1 0 0 0
|
| 116 |
+
15 48 1 0 0 0
|
| 117 |
+
16 49 1 0 0 0
|
| 118 |
+
16 50 1 0 0 0
|
| 119 |
+
17 51 1 0 0 0
|
| 120 |
+
18 52 1 0 0 0
|
| 121 |
+
18 53 1 0 0 0
|
| 122 |
+
20 54 1 0 0 0
|
| 123 |
+
22 55 1 0 0 0
|
| 124 |
+
22 56 1 0 0 0
|
| 125 |
+
24 57 1 0 0 0
|
| 126 |
+
26 58 1 0 0 0
|
| 127 |
+
27 59 1 0 0 0
|
| 128 |
+
27 60 1 0 0 0
|
| 129 |
+
29 61 1 0 0 0
|
| 130 |
+
31 62 1 0 0 0
|
| 131 |
+
31 63 1 0 0 0
|
| 132 |
+
33 64 1 0 0 0
|
| 133 |
+
M END
|
| 134 |
+
$$$$
|
1ind/1ind_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ind/1ind_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1jaq/1jaq_ligand.mol2
ADDED
|
@@ -0,0 +1,101 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1jaq_ligand
|
| 7 |
+
43 42 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 26.8430 59.7710 53.4900 C.2 1 01S 0.2212
|
| 14 |
+
2 O1 27.2550 58.6470 53.6670 O.2 1 01S -0.3933
|
| 15 |
+
3 C2 27.7710 60.8910 52.9840 C.3 1 01S 0.1391
|
| 16 |
+
4 C3 28.1990 60.6030 51.5540 C.2 1 01S 0.2006
|
| 17 |
+
5 O3 27.9860 61.4070 50.6410 O.2 1 01S -0.3933
|
| 18 |
+
6 C1' 29.0010 60.9470 53.8590 C.3 1 01S -0.0139
|
| 19 |
+
7 C2' 28.9460 61.9840 54.9840 C.3 1 01S -0.0424
|
| 20 |
+
8 C3' 29.2660 63.3870 54.4510 C.3 1 01S -0.0624
|
| 21 |
+
9 C4' 27.5730 61.9580 55.7150 C.3 1 01S -0.0624
|
| 22 |
+
10 N 25.5830 60.0800 53.7210 N.am 1 01S -0.1620
|
| 23 |
+
11 O5 24.7190 59.0810 54.1600 O.3 1 01S -0.2716
|
| 24 |
+
12 N 28.8560 59.4730 51.3550 N.am 1 01S -0.2637
|
| 25 |
+
13 CA 29.3250 59.1540 50.0270 C.3 1 01S 0.1283
|
| 26 |
+
14 C 28.2420 58.4100 49.2240 C.2 1 01S 0.2034
|
| 27 |
+
15 O 28.4690 58.0280 48.0740 O.2 1 01S -0.3944
|
| 28 |
+
16 CB 30.6140 58.3850 50.1030 C.3 1 01S -0.0244
|
| 29 |
+
17 C1 25.9370 56.1170 48.8290 C.2 1 01S 0.1960
|
| 30 |
+
18 N1 26.3920 55.2060 49.6780 N.am 1 01S -0.2992
|
| 31 |
+
19 O1 25.1680 55.8360 47.9080 O.2 1 01S -0.3951
|
| 32 |
+
20 C2 25.9430 57.5180 49.3080 C.3 1 01S 0.1198
|
| 33 |
+
21 N2 27.1300 58.1020 49.9100 N.am 1 01S -0.2664
|
| 34 |
+
22 H1 27.2414 61.8543 53.0240 H 1 01S 0.0774
|
| 35 |
+
23 H2 29.8646 61.1822 53.2196 H 1 01S 0.0318
|
| 36 |
+
24 H3 29.1414 59.9558 54.3148 H 1 01S 0.0318
|
| 37 |
+
25 H4 29.7201 61.7205 55.7198 H 1 01S 0.0298
|
| 38 |
+
26 H5 29.2200 64.1122 55.2768 H 1 01S 0.0232
|
| 39 |
+
27 H6 28.5317 63.6626 53.6798 H 1 01S 0.0232
|
| 40 |
+
28 H7 30.2756 63.3920 54.0145 H 1 01S 0.0232
|
| 41 |
+
29 H8 27.3734 60.9412 56.0842 H 1 01S 0.0232
|
| 42 |
+
30 H9 26.7790 62.2562 55.0146 H 1 01S 0.0232
|
| 43 |
+
31 H10 27.5958 62.6581 56.5631 H 1 01S 0.0232
|
| 44 |
+
32 H11 25.2539 61.0142 53.5835 H 1 01S 0.2218
|
| 45 |
+
33 H12 23.8509 59.4465 54.2838 H 1 01S 0.2490
|
| 46 |
+
34 H13 29.0262 58.8464 52.1155 H 1 01S 0.1884
|
| 47 |
+
35 H14 29.5318 60.0998 49.5049 H 1 01S 0.0797
|
| 48 |
+
36 H15 30.9603 58.1484 49.0861 H 1 01S 0.0277
|
| 49 |
+
37 H16 30.4516 57.4514 50.6615 H 1 01S 0.0277
|
| 50 |
+
38 H17 31.3736 58.9924 50.6169 H 1 01S 0.0277
|
| 51 |
+
39 H18 26.4134 54.2420 49.4129 H 1 01S 0.1815
|
| 52 |
+
40 H19 26.7138 55.4829 50.5834 H 1 01S 0.1815
|
| 53 |
+
41 H20 25.1427 57.5944 50.0588 H 1 01S 0.0763
|
| 54 |
+
42 H21 25.6926 58.1455 48.4400 H 1 01S 0.0763
|
| 55 |
+
43 H22 27.1176 58.2851 50.8930 H 1 01S 0.1881
|
| 56 |
+
@<TRIPOS>BOND
|
| 57 |
+
1 1 10 am
|
| 58 |
+
2 3 1 1
|
| 59 |
+
3 1 2 2
|
| 60 |
+
4 3 6 1
|
| 61 |
+
5 4 3 1
|
| 62 |
+
6 4 5 2
|
| 63 |
+
7 6 7 1
|
| 64 |
+
8 7 9 1
|
| 65 |
+
9 7 8 1
|
| 66 |
+
10 10 11 1
|
| 67 |
+
11 14 13 1
|
| 68 |
+
12 13 16 1
|
| 69 |
+
13 13 12 1
|
| 70 |
+
14 14 15 2
|
| 71 |
+
15 20 17 1
|
| 72 |
+
16 17 19 2
|
| 73 |
+
17 17 18 am
|
| 74 |
+
18 21 20 1
|
| 75 |
+
19 12 4 am
|
| 76 |
+
20 21 14 am
|
| 77 |
+
21 3 22 1
|
| 78 |
+
22 6 23 1
|
| 79 |
+
23 6 24 1
|
| 80 |
+
24 7 25 1
|
| 81 |
+
25 8 26 1
|
| 82 |
+
26 8 27 1
|
| 83 |
+
27 8 28 1
|
| 84 |
+
28 9 29 1
|
| 85 |
+
29 9 30 1
|
| 86 |
+
30 9 31 1
|
| 87 |
+
31 10 32 1
|
| 88 |
+
32 11 33 1
|
| 89 |
+
33 12 34 1
|
| 90 |
+
34 13 35 1
|
| 91 |
+
35 16 36 1
|
| 92 |
+
36 16 37 1
|
| 93 |
+
37 16 38 1
|
| 94 |
+
38 18 39 1
|
| 95 |
+
39 18 40 1
|
| 96 |
+
40 20 41 1
|
| 97 |
+
41 20 42 1
|
| 98 |
+
42 21 43 1
|
| 99 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 100 |
+
1 01S 1
|
| 101 |
+
|
1jaq/1jaq_ligand.sdf
ADDED
|
@@ -0,0 +1,91 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1jaq_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
43 42 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
26.8430 59.7710 53.4900 C 0 0 0 0 0
|
| 6 |
+
27.2550 58.6470 53.6670 O 0 0 0 0 0
|
| 7 |
+
27.7710 60.8910 52.9840 C 0 0 0 0 0
|
| 8 |
+
28.1990 60.6030 51.5540 C 0 0 0 0 0
|
| 9 |
+
27.9860 61.4070 50.6410 O 0 0 0 0 0
|
| 10 |
+
29.0010 60.9470 53.8590 C 0 0 0 0 0
|
| 11 |
+
28.9460 61.9840 54.9840 C 0 0 0 0 0
|
| 12 |
+
29.2660 63.3870 54.4510 C 0 0 0 0 0
|
| 13 |
+
27.5730 61.9580 55.7150 C 0 0 0 0 0
|
| 14 |
+
25.5830 60.0800 53.7210 N 0 0 0 0 0
|
| 15 |
+
24.7190 59.0810 54.1600 O 0 0 0 0 0
|
| 16 |
+
28.8560 59.4730 51.3550 N 0 0 0 0 0
|
| 17 |
+
29.3250 59.1540 50.0270 C 0 0 0 0 0
|
| 18 |
+
28.2420 58.4100 49.2240 C 0 0 0 0 0
|
| 19 |
+
28.4690 58.0280 48.0740 O 0 0 0 0 0
|
| 20 |
+
30.6140 58.3850 50.1030 C 0 0 0 0 0
|
| 21 |
+
25.9370 56.1170 48.8290 C 0 0 0 0 0
|
| 22 |
+
26.3920 55.2060 49.6780 N 0 0 0 0 0
|
| 23 |
+
25.1680 55.8360 47.9080 O 0 0 0 0 0
|
| 24 |
+
25.9430 57.5180 49.3080 C 0 0 0 0 0
|
| 25 |
+
27.1300 58.1020 49.9100 N 0 0 0 0 0
|
| 26 |
+
27.2382 61.8412 53.0195 H 0 0 0 0 0
|
| 27 |
+
29.8344 61.2255 53.2140 H 0 0 0 0 0
|
| 28 |
+
29.0944 59.9706 54.3345 H 0 0 0 0 0
|
| 29 |
+
29.7092 61.7206 55.7163 H 0 0 0 0 0
|
| 30 |
+
28.4915 63.6924 53.7474 H 0 0 0 0 0
|
| 31 |
+
29.3013 64.0909 55.2825 H 0 0 0 0 0
|
| 32 |
+
30.2317 63.3708 53.9458 H 0 0 0 0 0
|
| 33 |
+
27.5969 62.6521 56.5551 H 0 0 0 0 0
|
| 34 |
+
26.7871 62.2536 55.0200 H 0 0 0 0 0
|
| 35 |
+
27.3764 60.9501 56.0804 H 0 0 0 0 0
|
| 36 |
+
25.2473 61.0329 53.5808 H 0 0 0 0 0
|
| 37 |
+
23.8418 59.4504 54.2851 H 0 0 0 0 0
|
| 38 |
+
29.0296 58.8338 52.1307 H 0 0 0 0 0
|
| 39 |
+
29.5289 60.0803 49.4899 H 0 0 0 0 0
|
| 40 |
+
30.4351 57.4254 50.5880 H 0 0 0 0 0
|
| 41 |
+
30.9964 58.2188 49.0959 H 0 0 0 0 0
|
| 42 |
+
31.3422 58.9550 50.6800 H 0 0 0 0 0
|
| 43 |
+
26.1065 54.2315 49.5817 H 0 0 0 0 0
|
| 44 |
+
27.0275 55.4796 50.4274 H 0 0 0 0 0
|
| 45 |
+
25.2095 57.5234 50.1142 H 0 0 0 0 0
|
| 46 |
+
25.7907 58.1060 48.4029 H 0 0 0 0 0
|
| 47 |
+
27.1173 58.2888 50.9127 H 0 0 0 0 0
|
| 48 |
+
1 10 1 0 0 0
|
| 49 |
+
3 1 1 0 0 0
|
| 50 |
+
1 2 2 0 0 0
|
| 51 |
+
3 6 1 0 0 0
|
| 52 |
+
4 3 1 0 0 0
|
| 53 |
+
4 5 2 0 0 0
|
| 54 |
+
6 7 1 0 0 0
|
| 55 |
+
7 9 1 0 0 0
|
| 56 |
+
7 8 1 0 0 0
|
| 57 |
+
10 11 1 0 0 0
|
| 58 |
+
14 13 1 0 0 0
|
| 59 |
+
13 16 1 0 0 0
|
| 60 |
+
13 12 1 0 0 0
|
| 61 |
+
14 15 2 0 0 0
|
| 62 |
+
20 17 1 0 0 0
|
| 63 |
+
17 19 2 0 0 0
|
| 64 |
+
17 18 1 0 0 0
|
| 65 |
+
21 20 1 0 0 0
|
| 66 |
+
12 4 1 0 0 0
|
| 67 |
+
21 14 1 0 0 0
|
| 68 |
+
3 22 1 0 0 0
|
| 69 |
+
6 23 1 0 0 0
|
| 70 |
+
6 24 1 0 0 0
|
| 71 |
+
7 25 1 0 0 0
|
| 72 |
+
8 26 1 0 0 0
|
| 73 |
+
8 27 1 0 0 0
|
| 74 |
+
8 28 1 0 0 0
|
| 75 |
+
9 29 1 0 0 0
|
| 76 |
+
9 30 1 0 0 0
|
| 77 |
+
9 31 1 0 0 0
|
| 78 |
+
10 32 1 0 0 0
|
| 79 |
+
11 33 1 0 0 0
|
| 80 |
+
12 34 1 0 0 0
|
| 81 |
+
13 35 1 0 0 0
|
| 82 |
+
16 36 1 0 0 0
|
| 83 |
+
16 37 1 0 0 0
|
| 84 |
+
16 38 1 0 0 0
|
| 85 |
+
18 39 1 0 0 0
|
| 86 |
+
18 40 1 0 0 0
|
| 87 |
+
20 41 1 0 0 0
|
| 88 |
+
20 42 1 0 0 0
|
| 89 |
+
21 43 1 0 0 0
|
| 90 |
+
M END
|
| 91 |
+
$$$$
|
1jaq/1jaq_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1jaq/1jaq_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lst/1lst_ligand.mol2
ADDED
|
@@ -0,0 +1,65 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1lst_ligand
|
| 7 |
+
25 24 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N 18.6630 58.2310 45.7710 N.4 1 LYS 0.2327
|
| 14 |
+
2 CA 18.7290 57.4460 46.9820 C.3 1 LYS 0.0283
|
| 15 |
+
3 C 18.1410 58.2870 48.1410 C.2 1 LYS 0.0844
|
| 16 |
+
4 O 18.0400 57.7970 49.2670 O.co2 1 LYS -0.5643
|
| 17 |
+
5 CB 20.1830 57.0870 47.2580 C.3 1 LYS 0.0026
|
| 18 |
+
6 CG 21.1600 58.2480 47.2380 C.3 1 LYS -0.0416
|
| 19 |
+
7 CD 22.4420 57.7740 47.8560 C.3 1 LYS -0.0123
|
| 20 |
+
8 CE 23.5210 58.8140 47.6670 C.3 1 LYS -0.0354
|
| 21 |
+
9 NZ 24.7560 58.4420 48.3590 N.4 1 LYS 0.2185
|
| 22 |
+
10 OXT 17.7910 59.4530 47.9000 O.co2 1 LYS -0.5643
|
| 23 |
+
11 H1 19.0424 57.6981 45.0041 H 1 LYS 0.2010
|
| 24 |
+
12 H2 19.1980 59.0770 45.8894 H 1 LYS 0.2010
|
| 25 |
+
13 H3 17.7026 58.4655 45.5745 H 1 LYS 0.2010
|
| 26 |
+
14 H4 18.1414 56.5238 46.8626 H 1 LYS 0.1024
|
| 27 |
+
15 H5 20.5033 56.3620 46.4953 H 1 LYS 0.0339
|
| 28 |
+
16 H6 20.2333 56.6195 48.2524 H 1 LYS 0.0339
|
| 29 |
+
17 H7 20.7535 59.0901 47.8173 H 1 LYS 0.0270
|
| 30 |
+
18 H8 21.3398 58.5689 46.2013 H 1 LYS 0.0270
|
| 31 |
+
19 H9 22.7530 56.8348 47.3752 H 1 LYS 0.0317
|
| 32 |
+
20 H10 22.2864 57.6016 48.9312 H 1 LYS 0.0317
|
| 33 |
+
21 H11 23.1641 59.7750 48.0658 H 1 LYS 0.0813
|
| 34 |
+
22 H12 23.7317 58.9184 46.5924 H 1 LYS 0.0813
|
| 35 |
+
23 H13 25.4518 59.1563 48.2118 H 1 LYS 0.1994
|
| 36 |
+
24 H14 25.0934 57.5643 47.9958 H 1 LYS 0.1994
|
| 37 |
+
25 H15 24.5733 58.3493 49.3460 H 1 LYS 0.1994
|
| 38 |
+
@<TRIPOS>BOND
|
| 39 |
+
1 1 2 1
|
| 40 |
+
2 2 3 1
|
| 41 |
+
3 2 5 1
|
| 42 |
+
4 3 4 ar
|
| 43 |
+
5 3 10 ar
|
| 44 |
+
6 5 6 1
|
| 45 |
+
7 6 7 1
|
| 46 |
+
8 7 8 1
|
| 47 |
+
9 8 9 1
|
| 48 |
+
10 1 11 1
|
| 49 |
+
11 1 12 1
|
| 50 |
+
12 1 13 1
|
| 51 |
+
13 2 14 1
|
| 52 |
+
14 5 15 1
|
| 53 |
+
15 5 16 1
|
| 54 |
+
16 6 17 1
|
| 55 |
+
17 6 18 1
|
| 56 |
+
18 7 19 1
|
| 57 |
+
19 7 20 1
|
| 58 |
+
20 8 21 1
|
| 59 |
+
21 8 22 1
|
| 60 |
+
22 9 23 1
|
| 61 |
+
23 9 24 1
|
| 62 |
+
24 9 25 1
|
| 63 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 64 |
+
1 LYS 1
|
| 65 |
+
|
1lst/1lst_ligand.sdf
ADDED
|
@@ -0,0 +1,57 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1lst_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
26 25 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
18.6630 58.2310 45.7710 N 0 3 0 0 0
|
| 6 |
+
18.7290 57.4460 46.9820 C 0 0 0 0 0
|
| 7 |
+
18.1410 58.2870 48.1410 C 0 0 0 0 0
|
| 8 |
+
18.0400 57.7970 49.2670 O 0 0 0 0 0
|
| 9 |
+
20.1830 57.0870 47.2580 C 0 0 0 0 0
|
| 10 |
+
21.1600 58.2480 47.2380 C 0 0 0 0 0
|
| 11 |
+
22.4420 57.7740 47.8560 C 0 0 0 0 0
|
| 12 |
+
23.5210 58.8140 47.6670 C 0 0 0 0 0
|
| 13 |
+
24.7560 58.4420 48.3590 N 0 3 0 0 0
|
| 14 |
+
17.7910 59.4530 47.9000 O 0 0 0 0 0
|
| 15 |
+
17.6917 58.4760 45.5786 H 0 0 0 0 0
|
| 16 |
+
19.2127 59.0821 45.8886 H 0 0 0 0 0
|
| 17 |
+
19.0381 57.6872 44.9939 H 0 0 0 0 0
|
| 18 |
+
18.1557 56.5243 46.8827 H 0 0 0 0 0
|
| 19 |
+
20.4911 56.4094 46.4618 H 0 0 0 0 0
|
| 20 |
+
20.2139 56.6738 48.2662 H 0 0 0 0 0
|
| 21 |
+
20.7579 59.0925 47.7978 H 0 0 0 0 0
|
| 22 |
+
21.3323 58.5819 46.2148 H 0 0 0 0 0
|
| 23 |
+
22.7503 56.8455 47.3755 H 0 0 0 0 0
|
| 24 |
+
22.2866 57.6076 48.9220 H 0 0 0 0 0
|
| 25 |
+
23.1656 59.7577 48.0807 H 0 0 0 0 0
|
| 26 |
+
23.7354 58.8978 46.6016 H 0 0 0 0 0
|
| 27 |
+
25.4593 59.1654 48.2093 H 0 0 0 0 0
|
| 28 |
+
24.5699 58.3484 49.3575 H 0 0 0 0 0
|
| 29 |
+
25.0964 57.5538 47.9907 H 0 0 0 0 0
|
| 30 |
+
17.9472 59.6477 46.9730 H 0 0 0 0 0
|
| 31 |
+
1 2 1 0 0 0
|
| 32 |
+
2 3 1 0 0 0
|
| 33 |
+
2 5 1 0 0 0
|
| 34 |
+
3 4 2 0 0 0
|
| 35 |
+
3 10 1 0 0 0
|
| 36 |
+
5 6 1 0 0 0
|
| 37 |
+
6 7 1 0 0 0
|
| 38 |
+
7 8 1 0 0 0
|
| 39 |
+
8 9 1 0 0 0
|
| 40 |
+
1 11 1 0 0 0
|
| 41 |
+
1 12 1 0 0 0
|
| 42 |
+
1 13 1 0 0 0
|
| 43 |
+
2 14 1 0 0 0
|
| 44 |
+
5 15 1 0 0 0
|
| 45 |
+
5 16 1 0 0 0
|
| 46 |
+
6 17 1 0 0 0
|
| 47 |
+
6 18 1 0 0 0
|
| 48 |
+
7 19 1 0 0 0
|
| 49 |
+
7 20 1 0 0 0
|
| 50 |
+
8 21 1 0 0 0
|
| 51 |
+
8 22 1 0 0 0
|
| 52 |
+
9 23 1 0 0 0
|
| 53 |
+
9 24 1 0 0 0
|
| 54 |
+
9 25 1 0 0 0
|
| 55 |
+
10 26 1 0 0 0
|
| 56 |
+
M END
|
| 57 |
+
$$$$
|
1lst/1lst_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1lst/1lst_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1nhu/1nhu_ligand.mol2
ADDED
|
@@ -0,0 +1,118 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:50 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1nhu_ligand
|
| 7 |
+
50 52 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 N1 7.3180 33.2600 77.8600 N.am 1 153 -0.2430
|
| 14 |
+
2 C2 7.1460 32.8210 76.3930 C.3 1 153 0.1082
|
| 15 |
+
3 C3 5.6810 32.9860 75.8330 C.2 1 153 0.0624
|
| 16 |
+
4 O4 5.4030 32.5250 74.6950 O.co2 1 153 -0.5664
|
| 17 |
+
5 O5 4.8390 33.5880 76.5270 O.co2 1 153 -0.5664
|
| 18 |
+
6 C6 7.2500 34.6300 78.2460 C.2 1 153 0.2113
|
| 19 |
+
7 O7 6.8810 34.9810 79.3550 O.2 1 153 -0.3843
|
| 20 |
+
8 C8 7.6660 35.7540 77.3020 C.ar 1 153 0.0639
|
| 21 |
+
9 C9 6.6330 36.4720 76.6380 C.ar 1 153 -0.0412
|
| 22 |
+
10 C10 6.9640 37.5310 75.7610 C.ar 1 153 -0.0422
|
| 23 |
+
11 C11 8.3290 37.8700 75.5480 C.ar 1 153 0.0454
|
| 24 |
+
12 C12 9.3600 37.1560 76.2120 C.ar 1 153 -0.0283
|
| 25 |
+
13 C13 9.0400 36.1000 77.0890 C.ar 1 153 0.0609
|
| 26 |
+
14 CL14 8.7340 39.1510 74.4800 Cl 1 153 -0.0666
|
| 27 |
+
15 CL15 10.3320 35.2670 77.8840 Cl 1 153 -0.0648
|
| 28 |
+
16 C16 7.6790 31.3640 76.1200 C.3 1 153 0.0162
|
| 29 |
+
17 C17 9.1880 31.1640 76.0270 C.ar 1 153 -0.0392
|
| 30 |
+
18 C18 9.7150 29.8360 75.8460 C.ar 1 153 -0.0602
|
| 31 |
+
19 C19 11.1140 29.6040 75.7620 C.ar 1 153 -0.0686
|
| 32 |
+
20 C20 12.0130 30.7040 75.8610 C.ar 1 153 -0.0687
|
| 33 |
+
21 C21 11.5100 32.0260 76.0400 C.ar 1 153 -0.0686
|
| 34 |
+
22 C22 10.1100 32.2520 76.1210 C.ar 1 153 -0.0602
|
| 35 |
+
23 C23 7.5490 32.1750 78.9240 C.3 1 153 0.0754
|
| 36 |
+
24 C24 8.9060 32.2070 79.6980 C.ar 1 153 0.0084
|
| 37 |
+
25 C25 9.3060 33.3470 80.4750 C.ar 1 153 -0.0297
|
| 38 |
+
26 C26 10.5410 33.3880 81.1820 C.ar 1 153 -0.0377
|
| 39 |
+
27 C27 11.4390 32.3020 81.1550 C.ar 1 153 -0.0377
|
| 40 |
+
28 C28 11.0680 31.1560 80.4000 C.ar 1 153 0.0410
|
| 41 |
+
29 C29 9.8160 31.1020 79.6760 C.ar 1 153 -0.0289
|
| 42 |
+
30 C30 11.9980 29.9280 80.3290 C.3 1 153 0.3750
|
| 43 |
+
31 F31 12.9640 30.1320 79.4200 F 1 153 -0.2204
|
| 44 |
+
32 F32 11.3230 28.8130 79.9770 F 1 153 -0.2204
|
| 45 |
+
33 F33 12.5800 29.6930 81.5150 F 1 153 -0.2204
|
| 46 |
+
34 H1 7.7786 33.5001 75.8026 H 1 153 0.0753
|
| 47 |
+
35 H2 5.5948 36.2081 76.8038 H 1 153 0.0669
|
| 48 |
+
36 H3 6.1807 38.0821 75.2532 H 1 153 0.0635
|
| 49 |
+
37 H4 10.3970 37.4236 76.0442 H 1 153 0.0640
|
| 50 |
+
38 H5 7.2445 31.0291 75.1666 H 1 153 0.0467
|
| 51 |
+
39 H6 7.3129 30.7227 76.9353 H 1 153 0.0467
|
| 52 |
+
40 H7 9.0315 28.9979 75.7725 H 1 153 0.0557
|
| 53 |
+
41 H8 11.4940 28.5982 75.6237 H 1 153 0.0599
|
| 54 |
+
42 H9 13.0821 30.5358 75.8001 H 1 153 0.0559
|
| 55 |
+
43 H10 12.1976 32.8607 76.1145 H 1 153 0.0599
|
| 56 |
+
44 H11 9.7368 33.2608 76.2556 H 1 153 0.0557
|
| 57 |
+
45 H12 7.4784 31.1991 78.4214 H 1 153 0.0692
|
| 58 |
+
46 H13 6.7428 32.2640 79.6670 H 1 153 0.0692
|
| 59 |
+
47 H14 8.6453 34.2049 80.5247 H 1 153 0.0803
|
| 60 |
+
48 H15 10.7961 34.2733 81.7532 H 1 153 0.0683
|
| 61 |
+
49 H16 12.3802 32.3393 81.6915 H 1 153 0.0802
|
| 62 |
+
50 H17 9.5639 30.2129 79.1094 H 1 153 0.0780
|
| 63 |
+
@<TRIPOS>BOND
|
| 64 |
+
1 1 2 1
|
| 65 |
+
2 1 6 am
|
| 66 |
+
3 1 23 1
|
| 67 |
+
4 2 3 1
|
| 68 |
+
5 2 16 1
|
| 69 |
+
6 3 4 ar
|
| 70 |
+
7 3 5 ar
|
| 71 |
+
8 6 7 2
|
| 72 |
+
9 6 8 1
|
| 73 |
+
10 8 9 ar
|
| 74 |
+
11 8 13 ar
|
| 75 |
+
12 9 10 ar
|
| 76 |
+
13 10 11 ar
|
| 77 |
+
14 11 12 ar
|
| 78 |
+
15 11 14 1
|
| 79 |
+
16 12 13 ar
|
| 80 |
+
17 13 15 1
|
| 81 |
+
18 16 17 1
|
| 82 |
+
19 17 18 ar
|
| 83 |
+
20 17 22 ar
|
| 84 |
+
21 18 19 ar
|
| 85 |
+
22 19 20 ar
|
| 86 |
+
23 20 21 ar
|
| 87 |
+
24 21 22 ar
|
| 88 |
+
25 23 24 1
|
| 89 |
+
26 24 25 ar
|
| 90 |
+
27 24 29 ar
|
| 91 |
+
28 25 26 ar
|
| 92 |
+
29 26 27 ar
|
| 93 |
+
30 27 28 ar
|
| 94 |
+
31 28 29 ar
|
| 95 |
+
32 28 30 1
|
| 96 |
+
33 30 31 1
|
| 97 |
+
34 30 32 1
|
| 98 |
+
35 30 33 1
|
| 99 |
+
36 2 34 1
|
| 100 |
+
37 9 35 1
|
| 101 |
+
38 10 36 1
|
| 102 |
+
39 12 37 1
|
| 103 |
+
40 16 38 1
|
| 104 |
+
41 16 39 1
|
| 105 |
+
42 18 40 1
|
| 106 |
+
43 19 41 1
|
| 107 |
+
44 20 42 1
|
| 108 |
+
45 21 43 1
|
| 109 |
+
46 22 44 1
|
| 110 |
+
47 23 45 1
|
| 111 |
+
48 23 46 1
|
| 112 |
+
49 25 47 1
|
| 113 |
+
50 26 48 1
|
| 114 |
+
51 27 49 1
|
| 115 |
+
52 29 50 1
|
| 116 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 117 |
+
1 153 1
|
| 118 |
+
|
1nhu/1nhu_ligand.sdf
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
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|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1nhu_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
51 53 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
7.3180 33.2600 77.8600 N 0 0 0 0 0
|
| 6 |
+
7.1460 32.8210 76.3930 C 0 0 0 0 0
|
| 7 |
+
5.6810 32.9860 75.8330 C 0 0 0 0 0
|
| 8 |
+
5.4030 32.5250 74.6950 O 0 0 0 0 0
|
| 9 |
+
4.8390 33.5880 76.5270 O 0 0 0 0 0
|
| 10 |
+
7.2500 34.6300 78.2460 C 0 0 0 0 0
|
| 11 |
+
6.8810 34.9810 79.3550 O 0 0 0 0 0
|
| 12 |
+
7.6660 35.7540 77.3020 C 0 0 0 0 0
|
| 13 |
+
6.6330 36.4720 76.6380 C 0 0 0 0 0
|
| 14 |
+
6.9640 37.5310 75.7610 C 0 0 0 0 0
|
| 15 |
+
8.3290 37.8700 75.5480 C 0 0 0 0 0
|
| 16 |
+
9.3600 37.1560 76.2120 C 0 0 0 0 0
|
| 17 |
+
9.0400 36.1000 77.0890 C 0 0 0 0 0
|
| 18 |
+
8.7340 39.1510 74.4800 Cl 0 0 0 0 0
|
| 19 |
+
10.3320 35.2670 77.8840 Cl 0 0 0 0 0
|
| 20 |
+
7.6790 31.3640 76.1200 C 0 0 0 0 0
|
| 21 |
+
9.1880 31.1640 76.0270 C 0 0 0 0 0
|
| 22 |
+
9.7150 29.8360 75.8460 C 0 0 0 0 0
|
| 23 |
+
11.1140 29.6040 75.7620 C 0 0 0 0 0
|
| 24 |
+
12.0130 30.7040 75.8610 C 0 0 0 0 0
|
| 25 |
+
11.5100 32.0260 76.0400 C 0 0 0 0 0
|
| 26 |
+
10.1100 32.2520 76.1210 C 0 0 0 0 0
|
| 27 |
+
7.5490 32.1750 78.9240 C 0 0 0 0 0
|
| 28 |
+
8.9060 32.2070 79.6980 C 0 0 0 0 0
|
| 29 |
+
9.3060 33.3470 80.4750 C 0 0 0 0 0
|
| 30 |
+
10.5410 33.3880 81.1820 C 0 0 0 0 0
|
| 31 |
+
11.4390 32.3020 81.1550 C 0 0 0 0 0
|
| 32 |
+
11.0680 31.1560 80.4000 C 0 0 0 0 0
|
| 33 |
+
9.8160 31.1020 79.6760 C 0 0 0 0 0
|
| 34 |
+
11.9980 29.9280 80.3290 C 0 0 0 0 0
|
| 35 |
+
12.9640 30.1320 79.4200 F 0 0 0 0 0
|
| 36 |
+
11.3230 28.8130 79.9770 F 0 0 0 0 0
|
| 37 |
+
12.5800 29.6930 81.5150 F 0 0 0 0 0
|
| 38 |
+
7.7720 33.5207 75.8393 H 0 0 0 0 0
|
| 39 |
+
6.1800 32.0998 74.3247 H 0 0 0 0 0
|
| 40 |
+
5.5890 36.2067 76.8047 H 0 0 0 0 0
|
| 41 |
+
6.1764 38.0851 75.2504 H 0 0 0 0 0
|
| 42 |
+
10.4027 37.4250 76.0433 H 0 0 0 0 0
|
| 43 |
+
7.2886 31.0906 75.1397 H 0 0 0 0 0
|
| 44 |
+
7.3597 30.7722 76.9778 H 0 0 0 0 0
|
| 45 |
+
9.0277 28.9933 75.7721 H 0 0 0 0 0
|
| 46 |
+
11.4961 28.5927 75.6230 H 0 0 0 0 0
|
| 47 |
+
13.0881 30.5349 75.7998 H 0 0 0 0 0
|
| 48 |
+
12.2014 32.8653 76.1149 H 0 0 0 0 0
|
| 49 |
+
9.7347 33.2664 76.2563 H 0 0 0 0 0
|
| 50 |
+
7.5388 31.2272 78.3857 H 0 0 0 0 0
|
| 51 |
+
6.7764 32.3310 79.6769 H 0 0 0 0 0
|
| 52 |
+
8.6416 34.2097 80.5250 H 0 0 0 0 0
|
| 53 |
+
10.7975 34.2782 81.7564 H 0 0 0 0 0
|
| 54 |
+
12.3854 32.3395 81.6945 H 0 0 0 0 0
|
| 55 |
+
9.5625 30.2080 79.1063 H 0 0 0 0 0
|
| 56 |
+
1 2 1 0 0 0
|
| 57 |
+
1 6 1 0 0 0
|
| 58 |
+
1 23 1 0 0 0
|
| 59 |
+
2 3 1 0 0 0
|
| 60 |
+
2 16 1 0 0 0
|
| 61 |
+
3 4 1 0 0 0
|
| 62 |
+
3 5 2 0 0 0
|
| 63 |
+
6 7 2 0 0 0
|
| 64 |
+
6 8 1 0 0 0
|
| 65 |
+
8 9 4 0 0 0
|
| 66 |
+
8 13 4 0 0 0
|
| 67 |
+
9 10 4 0 0 0
|
| 68 |
+
10 11 4 0 0 0
|
| 69 |
+
11 12 4 0 0 0
|
| 70 |
+
11 14 1 0 0 0
|
| 71 |
+
12 13 4 0 0 0
|
| 72 |
+
13 15 1 0 0 0
|
| 73 |
+
16 17 1 0 0 0
|
| 74 |
+
17 18 4 0 0 0
|
| 75 |
+
17 22 4 0 0 0
|
| 76 |
+
18 19 4 0 0 0
|
| 77 |
+
19 20 4 0 0 0
|
| 78 |
+
20 21 4 0 0 0
|
| 79 |
+
21 22 4 0 0 0
|
| 80 |
+
23 24 1 0 0 0
|
| 81 |
+
24 25 4 0 0 0
|
| 82 |
+
24 29 4 0 0 0
|
| 83 |
+
25 26 4 0 0 0
|
| 84 |
+
26 27 4 0 0 0
|
| 85 |
+
27 28 4 0 0 0
|
| 86 |
+
28 29 4 0 0 0
|
| 87 |
+
28 30 1 0 0 0
|
| 88 |
+
30 31 1 0 0 0
|
| 89 |
+
30 32 1 0 0 0
|
| 90 |
+
30 33 1 0 0 0
|
| 91 |
+
2 34 1 0 0 0
|
| 92 |
+
4 35 1 0 0 0
|
| 93 |
+
9 36 1 0 0 0
|
| 94 |
+
10 37 1 0 0 0
|
| 95 |
+
12 38 1 0 0 0
|
| 96 |
+
16 39 1 0 0 0
|
| 97 |
+
16 40 1 0 0 0
|
| 98 |
+
18 41 1 0 0 0
|
| 99 |
+
19 42 1 0 0 0
|
| 100 |
+
20 43 1 0 0 0
|
| 101 |
+
21 44 1 0 0 0
|
| 102 |
+
22 45 1 0 0 0
|
| 103 |
+
23 46 1 0 0 0
|
| 104 |
+
23 47 1 0 0 0
|
| 105 |
+
25 48 1 0 0 0
|
| 106 |
+
26 49 1 0 0 0
|
| 107 |
+
27 50 1 0 0 0
|
| 108 |
+
29 51 1 0 0 0
|
| 109 |
+
M END
|
| 110 |
+
$$$$
|
1nhu/1nhu_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1nhu/1nhu_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1p6d/1p6d_ligand.mol2
ADDED
|
@@ -0,0 +1,159 @@
|
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|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:49 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1p6d_ligand
|
| 7 |
+
72 71 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C15 39.4560 20.9880 -6.2230 C.3 1 3PC -0.0653
|
| 14 |
+
2 C14 40.5620 21.4080 -5.2260 C.3 1 3PC -0.0558
|
| 15 |
+
3 C13 40.0910 21.2930 -3.7800 C.3 1 3PC -0.0511
|
| 16 |
+
4 C12 40.8840 22.2780 -2.9190 C.3 1 3PC -0.0348
|
| 17 |
+
5 C11 40.0390 22.7410 -1.7150 C.3 1 3PC 0.0487
|
| 18 |
+
6 C10 40.7110 23.4330 -0.5040 C.2 1 3PC 0.2338
|
| 19 |
+
7 O7 41.9210 23.7450 -0.5470 O.2 1 3PC -0.3704
|
| 20 |
+
8 O6 39.9680 23.7460 0.7540 O.3 1 3PC -0.2739
|
| 21 |
+
9 C9 40.4770 24.4210 1.9610 C.3 1 3PC 0.1073
|
| 22 |
+
10 C8 39.3640 24.7110 3.0000 C.3 1 3PC 0.1167
|
| 23 |
+
11 O5 38.1130 24.9980 2.3500 O.3 1 3PC -0.2708
|
| 24 |
+
12 C16 37.7360 26.0540 1.4120 C.2 1 3PC 0.2341
|
| 25 |
+
13 O8 38.5350 26.9790 1.1490 O.2 1 3PC -0.3704
|
| 26 |
+
14 C17 36.3140 26.0330 0.8010 C.3 1 3PC 0.0487
|
| 27 |
+
15 C18 36.2110 26.1580 -0.7230 C.3 1 3PC -0.0348
|
| 28 |
+
16 C19 36.6370 24.8620 -1.4190 C.3 1 3PC -0.0511
|
| 29 |
+
17 C20 36.9530 25.1600 -2.8860 C.3 1 3PC -0.0558
|
| 30 |
+
18 C21 36.7870 23.9150 -3.7850 C.3 1 3PC -0.0653
|
| 31 |
+
19 C7 39.1040 23.5080 3.8630 C.3 1 3PC -0.0018
|
| 32 |
+
20 C6 39.1890 23.4250 5.4190 C.3 1 3PC 0.0406
|
| 33 |
+
21 P1 40.8390 23.0800 6.0040 P.3 1 3PC 0.1203
|
| 34 |
+
22 O2 41.6920 24.2240 6.1430 O.co2 1 3PC -0.6203
|
| 35 |
+
23 O3 40.9870 22.1960 7.2440 O.co2 1 3PC -0.6203
|
| 36 |
+
24 O1 41.3310 22.0570 4.7520 O.3 1 3PC -0.2748
|
| 37 |
+
25 C5 42.6670 21.9460 4.1510 C.3 1 3PC 0.1216
|
| 38 |
+
26 C4 43.0000 20.6480 3.3230 C.3 1 3PC -0.0015
|
| 39 |
+
27 N1 42.1330 19.8840 2.2640 N.4 1 3PC 0.2388
|
| 40 |
+
28 C1 41.1940 18.8540 2.8190 C.3 1 3PC -0.0417
|
| 41 |
+
29 C2 41.2460 20.6820 1.3830 C.3 1 3PC -0.0417
|
| 42 |
+
30 C3 43.0900 19.1690 1.3280 C.3 1 3PC -0.0417
|
| 43 |
+
31 H1 39.8337 21.0847 -7.2516 H 1 3PC 0.0230
|
| 44 |
+
32 H2 38.5782 21.6379 -6.0921 H 1 3PC 0.0230
|
| 45 |
+
33 H3 39.1698 19.9428 -6.0342 H 1 3PC 0.0230
|
| 46 |
+
34 H4 40.8453 22.4518 -5.4267 H 1 3PC 0.0263
|
| 47 |
+
35 H5 41.4368 20.7567 -5.3688 H 1 3PC 0.0263
|
| 48 |
+
36 H6 40.2590 20.2681 -3.4176 H 1 3PC 0.0267
|
| 49 |
+
37 H7 39.0188 21.5317 -3.7211 H 1 3PC 0.0267
|
| 50 |
+
38 H8 41.1575 23.1526 -3.5275 H 1 3PC 0.0291
|
| 51 |
+
39 H9 41.7971 21.7859 -2.5530 H 1 3PC 0.0291
|
| 52 |
+
40 H10 39.5298 21.8474 -1.3249 H 1 3PC 0.0518
|
| 53 |
+
41 H11 39.2920 23.4469 -2.1069 H 1 3PC 0.0518
|
| 54 |
+
42 H12 40.9370 25.3747 1.6630 H 1 3PC 0.0643
|
| 55 |
+
43 H13 41.2366 23.7781 2.4296 H 1 3PC 0.0643
|
| 56 |
+
44 H14 39.6699 25.5639 3.6237 H 1 3PC 0.0677
|
| 57 |
+
45 H15 35.7509 26.8689 1.2415 H 1 3PC 0.0518
|
| 58 |
+
46 H16 35.8429 25.0815 1.0887 H 1 3PC 0.0518
|
| 59 |
+
47 H17 36.8638 26.9767 -1.0601 H 1 3PC 0.0291
|
| 60 |
+
48 H18 35.1692 26.3843 -0.9942 H 1 3PC 0.0291
|
| 61 |
+
49 H19 35.8205 24.1272 -1.3604 H 1 3PC 0.0267
|
| 62 |
+
50 H20 37.5320 24.4559 -0.9249 H 1 3PC 0.0267
|
| 63 |
+
51 H21 37.9920 25.5136 -2.9595 H 1 3PC 0.0263
|
| 64 |
+
52 H22 36.2718 25.9469 -3.2420 H 1 3PC 0.0263
|
| 65 |
+
53 H23 37.0247 24.1800 -4.8258 H 1 3PC 0.0230
|
| 66 |
+
54 H24 35.7490 23.5559 -3.7260 H 1 3PC 0.0230
|
| 67 |
+
55 H25 37.4692 23.1225 -3.4435 H 1 3PC 0.0230
|
| 68 |
+
56 H26 39.8075 22.7438 3.5010 H 1 3PC 0.0310
|
| 69 |
+
57 H27 38.0752 23.2037 3.6202 H 1 3PC 0.0310
|
| 70 |
+
58 H28 38.5188 22.6245 5.7654 H 1 3PC 0.0486
|
| 71 |
+
59 H29 38.8605 24.3864 5.8407 H 1 3PC 0.0486
|
| 72 |
+
60 H30 43.3999 22.0092 4.9689 H 1 3PC 0.0677
|
| 73 |
+
61 H31 42.7949 22.8057 3.4768 H 1 3PC 0.0677
|
| 74 |
+
62 H32 43.2209 19.8894 4.0883 H 1 3PC 0.0842
|
| 75 |
+
63 H33 43.9233 20.9028 2.7821 H 1 3PC 0.0842
|
| 76 |
+
64 H34 40.6388 18.3821 1.9949 H 1 3PC 0.0778
|
| 77 |
+
65 H35 40.4862 19.3369 3.5088 H 1 3PC 0.0778
|
| 78 |
+
66 H36 41.7685 18.0877 3.3601 H 1 3PC 0.0778
|
| 79 |
+
67 H37 41.8278 21.4856 0.9079 H 1 3PC 0.0778
|
| 80 |
+
68 H38 40.4342 21.1215 1.9811 H 1 3PC 0.0778
|
| 81 |
+
69 H39 40.8182 20.0308 0.6065 H 1 3PC 0.0778
|
| 82 |
+
70 H40 43.7851 18.5516 1.9159 H 1 3PC 0.0778
|
| 83 |
+
71 H41 43.6590 19.9109 0.7484 H 1 3PC 0.0778
|
| 84 |
+
72 H42 42.5197 18.5262 0.6413 H 1 3PC 0.0778
|
| 85 |
+
@<TRIPOS>BOND
|
| 86 |
+
1 1 2 1
|
| 87 |
+
2 2 3 1
|
| 88 |
+
3 3 4 1
|
| 89 |
+
4 4 5 1
|
| 90 |
+
5 5 6 1
|
| 91 |
+
6 6 7 2
|
| 92 |
+
7 6 8 1
|
| 93 |
+
8 8 9 1
|
| 94 |
+
9 9 10 1
|
| 95 |
+
10 10 11 1
|
| 96 |
+
11 10 19 1
|
| 97 |
+
12 11 12 1
|
| 98 |
+
13 12 13 2
|
| 99 |
+
14 12 14 1
|
| 100 |
+
15 14 15 1
|
| 101 |
+
16 15 16 1
|
| 102 |
+
17 16 17 1
|
| 103 |
+
18 17 18 1
|
| 104 |
+
19 19 20 1
|
| 105 |
+
20 20 21 1
|
| 106 |
+
21 21 22 ar
|
| 107 |
+
22 21 23 ar
|
| 108 |
+
23 21 24 1
|
| 109 |
+
24 24 25 1
|
| 110 |
+
25 25 26 1
|
| 111 |
+
26 26 27 1
|
| 112 |
+
27 27 28 1
|
| 113 |
+
28 27 29 1
|
| 114 |
+
29 27 30 1
|
| 115 |
+
30 1 31 1
|
| 116 |
+
31 1 32 1
|
| 117 |
+
32 1 33 1
|
| 118 |
+
33 2 34 1
|
| 119 |
+
34 2 35 1
|
| 120 |
+
35 3 36 1
|
| 121 |
+
36 3 37 1
|
| 122 |
+
37 4 38 1
|
| 123 |
+
38 4 39 1
|
| 124 |
+
39 5 40 1
|
| 125 |
+
40 5 41 1
|
| 126 |
+
41 9 42 1
|
| 127 |
+
42 9 43 1
|
| 128 |
+
43 10 44 1
|
| 129 |
+
44 14 45 1
|
| 130 |
+
45 14 46 1
|
| 131 |
+
46 15 47 1
|
| 132 |
+
47 15 48 1
|
| 133 |
+
48 16 49 1
|
| 134 |
+
49 16 50 1
|
| 135 |
+
50 17 51 1
|
| 136 |
+
51 17 52 1
|
| 137 |
+
52 18 53 1
|
| 138 |
+
53 18 54 1
|
| 139 |
+
54 18 55 1
|
| 140 |
+
55 19 56 1
|
| 141 |
+
56 19 57 1
|
| 142 |
+
57 20 58 1
|
| 143 |
+
58 20 59 1
|
| 144 |
+
59 25 60 1
|
| 145 |
+
60 25 61 1
|
| 146 |
+
61 26 62 1
|
| 147 |
+
62 26 63 1
|
| 148 |
+
63 28 64 1
|
| 149 |
+
64 28 65 1
|
| 150 |
+
65 28 66 1
|
| 151 |
+
66 29 67 1
|
| 152 |
+
67 29 68 1
|
| 153 |
+
68 29 69 1
|
| 154 |
+
69 30 70 1
|
| 155 |
+
70 30 71 1
|
| 156 |
+
71 30 72 1
|
| 157 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 158 |
+
1 3PC 1
|
| 159 |
+
|
1p6d/1p6d_ligand.sdf
ADDED
|
@@ -0,0 +1,151 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
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|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1p6d_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
73 72 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
39.4560 20.9880 -6.2230 C 0 0 0 0 0
|
| 6 |
+
40.5620 21.4080 -5.2260 C 0 0 0 0 0
|
| 7 |
+
40.0910 21.2930 -3.7800 C 0 0 0 0 0
|
| 8 |
+
40.8840 22.2780 -2.9190 C 0 0 0 0 0
|
| 9 |
+
40.0390 22.7410 -1.7150 C 0 0 0 0 0
|
| 10 |
+
40.7110 23.4330 -0.5040 C 0 0 0 0 0
|
| 11 |
+
41.9210 23.7450 -0.5470 O 0 0 0 0 0
|
| 12 |
+
39.9680 23.7460 0.7540 O 0 0 0 0 0
|
| 13 |
+
40.4770 24.4210 1.9610 C 0 0 0 0 0
|
| 14 |
+
39.3640 24.7110 3.0000 C 0 0 0 0 0
|
| 15 |
+
38.1130 24.9980 2.3500 O 0 0 0 0 0
|
| 16 |
+
37.7360 26.0540 1.4120 C 0 0 0 0 0
|
| 17 |
+
38.5350 26.9790 1.1490 O 0 0 0 0 0
|
| 18 |
+
36.3140 26.0330 0.8010 C 0 0 0 0 0
|
| 19 |
+
36.2110 26.1580 -0.7230 C 0 0 0 0 0
|
| 20 |
+
36.6370 24.8620 -1.4190 C 0 0 0 0 0
|
| 21 |
+
36.9530 25.1600 -2.8860 C 0 0 0 0 0
|
| 22 |
+
36.7870 23.9150 -3.7850 C 0 0 0 0 0
|
| 23 |
+
39.1040 23.5080 3.8630 C 0 0 0 0 0
|
| 24 |
+
39.1890 23.4250 5.4190 C 0 0 0 0 0
|
| 25 |
+
40.8390 23.0800 6.0040 P 0 0 0 0 0
|
| 26 |
+
41.6920 24.2240 6.1430 O 0 0 0 0 0
|
| 27 |
+
40.9870 22.1960 7.2440 O 0 0 0 0 0
|
| 28 |
+
41.3310 22.0570 4.7520 O 0 0 0 0 0
|
| 29 |
+
42.6670 21.9460 4.1510 C 0 0 0 0 0
|
| 30 |
+
43.0000 20.6480 3.3230 C 0 0 0 0 0
|
| 31 |
+
42.1330 19.8840 2.2640 N 0 3 0 0 0
|
| 32 |
+
41.1940 18.8540 2.8190 C 0 0 0 0 0
|
| 33 |
+
41.2460 20.6820 1.3830 C 0 0 0 0 0
|
| 34 |
+
43.0900 19.1690 1.3280 C 0 0 0 0 0
|
| 35 |
+
39.1733 19.9522 -6.0349 H 0 0 0 0 0
|
| 36 |
+
38.5869 21.6327 -6.0923 H 0 0 0 0 0
|
| 37 |
+
39.8314 21.0842 -7.2418 H 0 0 0 0 0
|
| 38 |
+
40.8229 22.4483 -5.4206 H 0 0 0 0 0
|
| 39 |
+
41.4170 20.7458 -5.3625 H 0 0 0 0 0
|
| 40 |
+
40.2527 20.2769 -3.4201 H 0 0 0 0 0
|
| 41 |
+
39.0277 21.5251 -3.7199 H 0 0 0 0 0
|
| 42 |
+
41.1464 23.1463 -3.5234 H 0 0 0 0 0
|
| 43 |
+
41.7839 21.7842 -2.5522 H 0 0 0 0 0
|
| 44 |
+
39.6291 21.8185 -1.3038 H 0 0 0 0 0
|
| 45 |
+
39.3785 23.5036 -2.1277 H 0 0 0 0 0
|
| 46 |
+
40.9052 25.3754 1.6547 H 0 0 0 0 0
|
| 47 |
+
41.2080 23.7619 2.4294 H 0 0 0 0 0
|
| 48 |
+
39.7130 25.5587 3.5896 H 0 0 0 0 0
|
| 49 |
+
35.8023 26.9057 1.2069 H 0 0 0 0 0
|
| 50 |
+
35.8976 25.0566 1.0488 H 0 0 0 0 0
|
| 51 |
+
36.8720 26.9605 -1.0503 H 0 0 0 0 0
|
| 52 |
+
35.1736 26.3668 -0.9842 H 0 0 0 0 0
|
| 53 |
+
35.8297 24.1321 -1.3594 H 0 0 0 0 0
|
| 54 |
+
37.5224 24.4572 -0.9288 H 0 0 0 0 0
|
| 55 |
+
37.9909 25.4871 -2.9490 H 0 0 0 0 0
|
| 56 |
+
36.2574 25.9238 -3.2337 H 0 0 0 0 0
|
| 57 |
+
37.4634 23.1305 -3.4456 H 0 0 0 0 0
|
| 58 |
+
35.7581 23.5601 -3.7256 H 0 0 0 0 0
|
| 59 |
+
37.0228 24.1788 -4.8160 H 0 0 0 0 0
|
| 60 |
+
39.9219 22.8508 3.5677 H 0 0 0 0 0
|
| 61 |
+
38.0382 23.3509 3.6973 H 0 0 0 0 0
|
| 62 |
+
38.5420 22.6109 5.7457 H 0 0 0 0 0
|
| 63 |
+
38.8874 24.3919 5.8218 H 0 0 0 0 0
|
| 64 |
+
40.4181 21.4275 7.1575 H 0 0 0 0 0
|
| 65 |
+
43.3621 21.9396 4.9906 H 0 0 0 0 0
|
| 66 |
+
42.7327 22.7682 3.4385 H 0 0 0 0 0
|
| 67 |
+
43.0307 19.9077 4.1225 H 0 0 0 0 0
|
| 68 |
+
43.8026 21.0214 2.6870 H 0 0 0 0 0
|
| 69 |
+
41.7644 18.0954 3.3549 H 0 0 0 0 0
|
| 70 |
+
40.4932 19.3337 3.5023 H 0 0 0 0 0
|
| 71 |
+
40.6445 18.3872 2.0016 H 0 0 0 0 0
|
| 72 |
+
40.5292 21.2317 1.9931 H 0 0 0 0 0
|
| 73 |
+
41.8466 21.3840 0.8046 H 0 0 0 0 0
|
| 74 |
+
40.7125 20.0147 0.7061 H 0 0 0 0 0
|
| 75 |
+
43.7337 19.9009 0.8400 H 0 0 0 0 0
|
| 76 |
+
43.7007 18.4699 1.8994 H 0 0 0 0 0
|
| 77 |
+
42.5206 18.6245 0.5747 H 0 0 0 0 0
|
| 78 |
+
1 2 1 0 0 0
|
| 79 |
+
2 3 1 0 0 0
|
| 80 |
+
3 4 1 0 0 0
|
| 81 |
+
4 5 1 0 0 0
|
| 82 |
+
5 6 1 0 0 0
|
| 83 |
+
6 7 2 0 0 0
|
| 84 |
+
6 8 1 0 0 0
|
| 85 |
+
8 9 1 0 0 0
|
| 86 |
+
9 10 1 0 0 0
|
| 87 |
+
10 11 1 0 0 0
|
| 88 |
+
10 19 1 0 0 0
|
| 89 |
+
11 12 1 0 0 0
|
| 90 |
+
12 13 2 0 0 0
|
| 91 |
+
12 14 1 0 0 0
|
| 92 |
+
14 15 1 0 0 0
|
| 93 |
+
15 16 1 0 0 0
|
| 94 |
+
16 17 1 0 0 0
|
| 95 |
+
17 18 1 0 0 0
|
| 96 |
+
19 20 1 0 0 0
|
| 97 |
+
20 21 1 0 0 0
|
| 98 |
+
21 22 2 0 0 0
|
| 99 |
+
21 23 1 0 0 0
|
| 100 |
+
21 24 1 0 0 0
|
| 101 |
+
24 25 1 0 0 0
|
| 102 |
+
25 26 1 0 0 0
|
| 103 |
+
26 27 1 0 0 0
|
| 104 |
+
27 28 1 0 0 0
|
| 105 |
+
27 29 1 0 0 0
|
| 106 |
+
27 30 1 0 0 0
|
| 107 |
+
1 31 1 0 0 0
|
| 108 |
+
1 32 1 0 0 0
|
| 109 |
+
1 33 1 0 0 0
|
| 110 |
+
2 34 1 0 0 0
|
| 111 |
+
2 35 1 0 0 0
|
| 112 |
+
3 36 1 0 0 0
|
| 113 |
+
3 37 1 0 0 0
|
| 114 |
+
4 38 1 0 0 0
|
| 115 |
+
4 39 1 0 0 0
|
| 116 |
+
5 40 1 0 0 0
|
| 117 |
+
5 41 1 0 0 0
|
| 118 |
+
9 42 1 0 0 0
|
| 119 |
+
9 43 1 0 0 0
|
| 120 |
+
10 44 1 0 0 0
|
| 121 |
+
14 45 1 0 0 0
|
| 122 |
+
14 46 1 0 0 0
|
| 123 |
+
15 47 1 0 0 0
|
| 124 |
+
15 48 1 0 0 0
|
| 125 |
+
16 49 1 0 0 0
|
| 126 |
+
16 50 1 0 0 0
|
| 127 |
+
17 51 1 0 0 0
|
| 128 |
+
17 52 1 0 0 0
|
| 129 |
+
18 53 1 0 0 0
|
| 130 |
+
18 54 1 0 0 0
|
| 131 |
+
18 55 1 0 0 0
|
| 132 |
+
19 56 1 0 0 0
|
| 133 |
+
19 57 1 0 0 0
|
| 134 |
+
20 58 1 0 0 0
|
| 135 |
+
20 59 1 0 0 0
|
| 136 |
+
23 60 1 0 0 0
|
| 137 |
+
25 61 1 0 0 0
|
| 138 |
+
25 62 1 0 0 0
|
| 139 |
+
26 63 1 0 0 0
|
| 140 |
+
26 64 1 0 0 0
|
| 141 |
+
28 65 1 0 0 0
|
| 142 |
+
28 66 1 0 0 0
|
| 143 |
+
28 67 1 0 0 0
|
| 144 |
+
29 68 1 0 0 0
|
| 145 |
+
29 69 1 0 0 0
|
| 146 |
+
29 70 1 0 0 0
|
| 147 |
+
30 71 1 0 0 0
|
| 148 |
+
30 72 1 0 0 0
|
| 149 |
+
30 73 1 0 0 0
|
| 150 |
+
M END
|
| 151 |
+
$$$$
|
1p6d/1p6d_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1p6d/1p6d_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1tcw/1tcw_ligand.mol2
ADDED
|
@@ -0,0 +1,180 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:45 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1tcw_ligand
|
| 7 |
+
81 83 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 65.6370 22.3890 28.2640 C.3 1 IM1 0.0905
|
| 14 |
+
2 C2 66.4690 22.3900 29.5510 C.3 1 IM1 -0.0320
|
| 15 |
+
3 C3 64.9440 23.7470 28.1780 C.3 1 IM1 -0.0320
|
| 16 |
+
4 C4 66.5690 22.2510 27.0450 C.3 1 IM1 -0.0320
|
| 17 |
+
5 C5 63.4510 21.2840 27.7980 C.2 1 IM1 0.3204
|
| 18 |
+
6 C6 62.0830 21.3250 25.7240 C.3 1 IM1 0.0794
|
| 19 |
+
7 C7 61.9880 22.4480 24.6670 C.3 1 IM1 0.0064
|
| 20 |
+
8 C8 60.6020 23.0890 24.6590 C.ar 1 IM1 -0.0408
|
| 21 |
+
9 C9 60.0290 23.5620 25.8610 C.ar 1 IM1 -0.0603
|
| 22 |
+
10 C10 58.7370 24.1140 25.8670 C.ar 1 IM1 -0.0686
|
| 23 |
+
11 C11 58.0150 24.1990 24.6770 C.ar 1 IM1 -0.0687
|
| 24 |
+
12 C12 58.5790 23.7350 23.4860 C.ar 1 IM1 -0.0686
|
| 25 |
+
13 C13 59.8660 23.1830 23.4720 C.ar 1 IM1 -0.0603
|
| 26 |
+
14 C14 61.8830 19.9970 25.0350 C.3 1 IM1 0.0823
|
| 27 |
+
15 C15 62.4620 19.7030 23.6640 C.3 1 IM1 -0.0029
|
| 28 |
+
16 C16 61.9020 18.3270 23.3700 C.3 1 IM1 0.0607
|
| 29 |
+
17 C17 61.3720 18.1750 21.9860 C.3 1 IM1 0.0007
|
| 30 |
+
18 C18 62.1540 18.5930 20.8150 C.ar 1 IM1 -0.0405
|
| 31 |
+
19 C19 63.0280 17.6860 20.2520 C.ar 1 IM1 -0.0602
|
| 32 |
+
20 C20 63.6660 18.0540 19.0690 C.ar 1 IM1 -0.0686
|
| 33 |
+
21 C21 63.4180 19.3030 18.4860 C.ar 1 IM1 -0.0687
|
| 34 |
+
22 C22 62.5310 20.2060 19.0850 C.ar 1 IM1 -0.0686
|
| 35 |
+
23 C23 61.8930 19.8490 20.2640 C.ar 1 IM1 -0.0602
|
| 36 |
+
24 C24 62.7460 17.1140 23.5930 C.2 1 IM1 0.1836
|
| 37 |
+
25 C25 62.5800 14.9710 24.5610 C.3 1 IM1 0.1193
|
| 38 |
+
26 C26 62.6790 14.9710 26.1200 C.3 1 IM1 -0.0078
|
| 39 |
+
27 C27 63.6280 13.8950 26.5310 C.3 1 IM1 -0.0583
|
| 40 |
+
28 C28 63.3690 16.2190 26.6700 C.3 1 IM1 -0.0583
|
| 41 |
+
29 C29 61.7940 13.8380 23.9510 C.2 1 IM1 0.1379
|
| 42 |
+
30 C30 61.5510 12.2910 22.4790 C.2 1 IM1 0.0252
|
| 43 |
+
31 C31 60.4080 12.4230 23.2800 C.2 1 IM1 -0.0367
|
| 44 |
+
32 N1 63.3410 21.3520 26.4480 N.am 1 IM1 -0.2550
|
| 45 |
+
33 N2 61.9740 16.2250 24.1970 N.am 1 IM1 -0.2660
|
| 46 |
+
34 N3 62.4300 13.2360 22.9460 N.pl3 1 IM1 -0.2628
|
| 47 |
+
35 N4 60.5870 13.4280 24.2190 N.2 1 IM1 -0.3371
|
| 48 |
+
36 O1 64.7250 21.3180 28.3790 O.3 1 IM1 -0.2581
|
| 49 |
+
37 O2 62.5170 21.1780 28.6050 O.2 1 IM1 -0.3775
|
| 50 |
+
38 O3 60.4760 19.7980 24.9850 O.3 1 IM1 -0.3892
|
| 51 |
+
39 O4 63.9440 16.9470 23.3270 O.2 1 IM1 -0.3964
|
| 52 |
+
40 H1 67.2007 23.2105 29.5139 H 1 IM1 0.0260
|
| 53 |
+
41 H2 66.9986 21.4306 29.6460 H 1 IM1 0.0260
|
| 54 |
+
42 H3 65.8050 22.5297 30.4168 H 1 IM1 0.0260
|
| 55 |
+
43 H4 65.7012 24.5401 28.0902 H 1 IM1 0.0260
|
| 56 |
+
44 H5 64.3448 23.9111 29.0858 H 1 IM1 0.0260
|
| 57 |
+
45 H6 64.2869 23.7682 27.2961 H 1 IM1 0.0260
|
| 58 |
+
46 H7 67.2541 23.1108 27.0081 H 1 IM1 0.0260
|
| 59 |
+
47 H8 65.9672 22.2219 26.1247 H 1 IM1 0.0260
|
| 60 |
+
48 H9 67.1512 21.3218 27.1319 H 1 IM1 0.0260
|
| 61 |
+
49 H10 61.2717 21.4673 26.4530 H 1 IM1 0.0604
|
| 62 |
+
50 H11 62.1913 22.0225 23.6732 H 1 IM1 0.0449
|
| 63 |
+
51 H12 62.7379 23.2195 24.8959 H 1 IM1 0.0449
|
| 64 |
+
52 H13 60.5908 23.4984 26.7859 H 1 IM1 0.0557
|
| 65 |
+
53 H14 58.3030 24.4725 26.7934 H 1 IM1 0.0599
|
| 66 |
+
54 H15 57.0179 24.6243 24.6761 H 1 IM1 0.0559
|
| 67 |
+
55 H16 58.0145 23.8030 22.5631 H 1 IM1 0.0599
|
| 68 |
+
56 H17 60.2927 22.8281 22.5409 H 1 IM1 0.0557
|
| 69 |
+
57 H18 62.3215 19.2419 25.7040 H 1 IM1 0.0619
|
| 70 |
+
58 H19 63.5616 19.6891 23.6898 H 1 IM1 0.0320
|
| 71 |
+
59 H20 62.1219 20.4393 22.9209 H 1 IM1 0.0320
|
| 72 |
+
60 H21 61.0482 18.2304 24.0567 H 1 IM1 0.0561
|
| 73 |
+
61 H22 60.4310 18.7434 21.9498 H 1 IM1 0.0453
|
| 74 |
+
62 H23 61.1591 17.1043 21.8509 H 1 IM1 0.0453
|
| 75 |
+
63 H24 63.2117 16.7223 20.7131 H 1 IM1 0.0557
|
| 76 |
+
64 H25 64.3597 17.3681 18.5963 H 1 IM1 0.0599
|
| 77 |
+
65 H26 63.9173 19.5732 17.5625 H 1 IM1 0.0559
|
| 78 |
+
66 H27 62.3450 21.1733 18.6324 H 1 IM1 0.0599
|
| 79 |
+
67 H28 61.2048 20.5323 20.7483 H 1 IM1 0.0557
|
| 80 |
+
68 H29 63.6003 14.9243 24.1527 H 1 IM1 0.0796
|
| 81 |
+
69 H30 61.6803 14.8378 26.5615 H 1 IM1 0.0345
|
| 82 |
+
70 H31 63.7114 13.8790 27.6277 H 1 IM1 0.0235
|
| 83 |
+
71 H32 64.6170 14.0905 26.0909 H 1 IM1 0.0235
|
| 84 |
+
72 H33 63.2551 12.9224 26.1774 H 1 IM1 0.0235
|
| 85 |
+
73 H34 62.7643 17.1068 26.4331 H 1 IM1 0.0235
|
| 86 |
+
74 H35 64.3638 16.3201 26.2116 H 1 IM1 0.0235
|
| 87 |
+
75 H36 63.4754 16.1284 27.7611 H 1 IM1 0.0235
|
| 88 |
+
76 H37 61.7078 11.5890 21.6614 H 1 IM1 0.0794
|
| 89 |
+
77 H38 59.5062 11.8210 23.1791 H 1 IM1 0.0408
|
| 90 |
+
78 H39 64.1839 21.4258 25.9150 H 1 IM1 0.1873
|
| 91 |
+
79 H40 61.0120 16.4159 24.3920 H 1 IM1 0.1887
|
| 92 |
+
80 H41 63.3774 13.4368 22.5953 H 1 IM1 0.2372
|
| 93 |
+
81 H42 60.2894 18.9702 24.5579 H 1 IM1 0.2099
|
| 94 |
+
@<TRIPOS>BOND
|
| 95 |
+
1 1 36 1
|
| 96 |
+
2 1 4 1
|
| 97 |
+
3 1 3 1
|
| 98 |
+
4 1 2 1
|
| 99 |
+
5 36 5 1
|
| 100 |
+
6 5 37 2
|
| 101 |
+
7 5 32 am
|
| 102 |
+
8 32 6 1
|
| 103 |
+
9 6 14 1
|
| 104 |
+
10 6 7 1
|
| 105 |
+
11 7 8 1
|
| 106 |
+
12 8 13 ar
|
| 107 |
+
13 8 9 ar
|
| 108 |
+
14 9 10 ar
|
| 109 |
+
15 10 11 ar
|
| 110 |
+
16 11 12 ar
|
| 111 |
+
17 12 13 ar
|
| 112 |
+
18 14 38 1
|
| 113 |
+
19 14 15 1
|
| 114 |
+
20 15 16 1
|
| 115 |
+
21 16 24 1
|
| 116 |
+
22 16 17 1
|
| 117 |
+
23 17 18 1
|
| 118 |
+
24 18 23 ar
|
| 119 |
+
25 18 19 ar
|
| 120 |
+
26 19 20 ar
|
| 121 |
+
27 20 21 ar
|
| 122 |
+
28 21 22 ar
|
| 123 |
+
29 22 23 ar
|
| 124 |
+
30 24 39 2
|
| 125 |
+
31 24 33 am
|
| 126 |
+
32 33 25 1
|
| 127 |
+
33 25 29 1
|
| 128 |
+
34 25 26 1
|
| 129 |
+
35 26 28 1
|
| 130 |
+
36 26 27 1
|
| 131 |
+
37 29 35 2
|
| 132 |
+
38 29 34 1
|
| 133 |
+
39 34 30 1
|
| 134 |
+
40 30 31 2
|
| 135 |
+
41 31 35 1
|
| 136 |
+
42 2 40 1
|
| 137 |
+
43 2 41 1
|
| 138 |
+
44 2 42 1
|
| 139 |
+
45 3 43 1
|
| 140 |
+
46 3 44 1
|
| 141 |
+
47 3 45 1
|
| 142 |
+
48 4 46 1
|
| 143 |
+
49 4 47 1
|
| 144 |
+
50 4 48 1
|
| 145 |
+
51 6 49 1
|
| 146 |
+
52 7 50 1
|
| 147 |
+
53 7 51 1
|
| 148 |
+
54 9 52 1
|
| 149 |
+
55 10 53 1
|
| 150 |
+
56 11 54 1
|
| 151 |
+
57 12 55 1
|
| 152 |
+
58 13 56 1
|
| 153 |
+
59 14 57 1
|
| 154 |
+
60 15 58 1
|
| 155 |
+
61 15 59 1
|
| 156 |
+
62 16 60 1
|
| 157 |
+
63 17 61 1
|
| 158 |
+
64 17 62 1
|
| 159 |
+
65 19 63 1
|
| 160 |
+
66 20 64 1
|
| 161 |
+
67 21 65 1
|
| 162 |
+
68 22 66 1
|
| 163 |
+
69 23 67 1
|
| 164 |
+
70 25 68 1
|
| 165 |
+
71 26 69 1
|
| 166 |
+
72 27 70 1
|
| 167 |
+
73 27 71 1
|
| 168 |
+
74 27 72 1
|
| 169 |
+
75 28 73 1
|
| 170 |
+
76 28 74 1
|
| 171 |
+
77 28 75 1
|
| 172 |
+
78 30 76 1
|
| 173 |
+
79 31 77 1
|
| 174 |
+
80 32 78 1
|
| 175 |
+
81 33 79 1
|
| 176 |
+
82 34 80 1
|
| 177 |
+
83 38 81 1
|
| 178 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 179 |
+
1 IM1 1
|
| 180 |
+
|
1tcw/1tcw_ligand.sdf
ADDED
|
@@ -0,0 +1,168 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1tcw_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
80 82 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
65.6370 22.3890 28.2640 C 0 0 0 0 0
|
| 6 |
+
66.4690 22.3900 29.5510 C 0 0 0 0 0
|
| 7 |
+
64.9440 23.7470 28.1780 C 0 0 0 0 0
|
| 8 |
+
66.5690 22.2510 27.0450 C 0 0 0 0 0
|
| 9 |
+
63.4510 21.2840 27.7980 C 0 0 0 0 0
|
| 10 |
+
62.0830 21.3250 25.7240 C 0 0 0 0 0
|
| 11 |
+
61.9880 22.4480 24.6670 C 0 0 0 0 0
|
| 12 |
+
60.6020 23.0890 24.6590 C 0 0 0 0 0
|
| 13 |
+
60.0290 23.5620 25.8610 C 0 0 0 0 0
|
| 14 |
+
58.7370 24.1140 25.8670 C 0 0 0 0 0
|
| 15 |
+
58.0150 24.1990 24.6770 C 0 0 0 0 0
|
| 16 |
+
58.5790 23.7350 23.4860 C 0 0 0 0 0
|
| 17 |
+
59.8660 23.1830 23.4720 C 0 0 0 0 0
|
| 18 |
+
61.8830 19.9970 25.0350 C 0 0 0 0 0
|
| 19 |
+
62.4620 19.7030 23.6640 C 0 0 0 0 0
|
| 20 |
+
61.9020 18.3270 23.3700 C 0 0 0 0 0
|
| 21 |
+
61.3720 18.1750 21.9860 C 0 0 0 0 0
|
| 22 |
+
62.1540 18.5930 20.8150 C 0 0 0 0 0
|
| 23 |
+
63.0280 17.6860 20.2520 C 0 0 0 0 0
|
| 24 |
+
63.6660 18.0540 19.0690 C 0 0 0 0 0
|
| 25 |
+
63.4180 19.3030 18.4860 C 0 0 0 0 0
|
| 26 |
+
62.5310 20.2060 19.0850 C 0 0 0 0 0
|
| 27 |
+
61.8930 19.8490 20.2640 C 0 0 0 0 0
|
| 28 |
+
62.7460 17.1140 23.5930 C 0 0 0 0 0
|
| 29 |
+
62.5800 14.9710 24.5610 C 0 0 0 0 0
|
| 30 |
+
62.6790 14.9710 26.1200 C 0 0 0 0 0
|
| 31 |
+
63.6280 13.8950 26.5310 C 0 0 0 0 0
|
| 32 |
+
63.3690 16.2190 26.6700 C 0 0 0 0 0
|
| 33 |
+
61.7940 13.8380 23.9510 C 0 0 0 0 0
|
| 34 |
+
61.5510 12.2910 22.4790 C 0 0 0 0 0
|
| 35 |
+
60.4080 12.4230 23.2800 C 0 0 0 0 0
|
| 36 |
+
63.3410 21.3520 26.4480 N 0 0 0 0 0
|
| 37 |
+
61.9740 16.2250 24.1970 N 0 0 0 0 0
|
| 38 |
+
62.4300 13.2360 22.9460 N 0 0 0 0 0
|
| 39 |
+
60.5870 13.4280 24.2190 N 0 0 0 0 0
|
| 40 |
+
64.7250 21.3180 28.3790 O 0 0 0 0 0
|
| 41 |
+
62.5170 21.1780 28.6050 O 0 0 0 0 0
|
| 42 |
+
60.4760 19.7980 24.9850 O 0 0 0 0 0
|
| 43 |
+
63.9440 16.9470 23.3270 O 0 0 0 0 0
|
| 44 |
+
65.8099 22.5284 30.4081 H 0 0 0 0 0
|
| 45 |
+
66.9932 21.4388 29.6440 H 0 0 0 0 0
|
| 46 |
+
67.1936 23.2034 29.5131 H 0 0 0 0 0
|
| 47 |
+
64.2932 23.7667 27.3038 H 0 0 0 0 0
|
| 48 |
+
64.3506 23.9083 29.0780 H 0 0 0 0 0
|
| 49 |
+
65.6952 24.5320 28.0910 H 0 0 0 0 0
|
| 50 |
+
67.1453 21.3299 27.1323 H 0 0 0 0 0
|
| 51 |
+
65.9715 22.2223 26.1338 H 0 0 0 0 0
|
| 52 |
+
67.2473 23.1035 27.0095 H 0 0 0 0 0
|
| 53 |
+
61.3026 21.4810 26.4688 H 0 0 0 0 0
|
| 54 |
+
62.1752 22.0154 23.6842 H 0 0 0 0 0
|
| 55 |
+
62.7231 23.2153 24.9098 H 0 0 0 0 0
|
| 56 |
+
60.5939 23.4981 26.7910 H 0 0 0 0 0
|
| 57 |
+
58.3006 24.4745 26.7985 H 0 0 0 0 0
|
| 58 |
+
57.0124 24.6267 24.6760 H 0 0 0 0 0
|
| 59 |
+
58.0114 23.8033 22.5580 H 0 0 0 0 0
|
| 60 |
+
60.2951 22.8261 22.5357 H 0 0 0 0 0
|
| 61 |
+
62.4786 19.3129 25.6394 H 0 0 0 0 0
|
| 62 |
+
63.5512 19.7384 23.6402 H 0 0 0 0 0
|
| 63 |
+
62.1919 20.4467 22.9143 H 0 0 0 0 0
|
| 64 |
+
61.1358 18.3337 24.1453 H 0 0 0 0 0
|
| 65 |
+
60.5025 18.8320 21.9665 H 0 0 0 0 0
|
| 66 |
+
61.2734 17.0966 21.8619 H 0 0 0 0 0
|
| 67 |
+
63.2127 16.7170 20.7156 H 0 0 0 0 0
|
| 68 |
+
64.3635 17.3643 18.5937 H 0 0 0 0 0
|
| 69 |
+
63.9200 19.5747 17.5574 H 0 0 0 0 0
|
| 70 |
+
62.3439 21.1786 18.6299 H 0 0 0 0 0
|
| 71 |
+
61.2010 20.5361 20.7510 H 0 0 0 0 0
|
| 72 |
+
63.5883 14.8337 24.1703 H 0 0 0 0 0
|
| 73 |
+
61.6555 14.8755 26.4826 H 0 0 0 0 0
|
| 74 |
+
63.2574 12.9319 26.1800 H 0 0 0 0 0
|
| 75 |
+
64.6075 14.0899 26.0943 H 0 0 0 0 0
|
| 76 |
+
63.7098 13.8801 27.6178 H 0 0 0 0 0
|
| 77 |
+
64.3818 16.2780 26.2715 H 0 0 0 0 0
|
| 78 |
+
62.8076 17.1043 26.3715 H 0 0 0 0 0
|
| 79 |
+
63.4079 16.1615 27.7578 H 0 0 0 0 0
|
| 80 |
+
61.7080 11.5884 21.6606 H 0 0 0 0 0
|
| 81 |
+
59.5053 11.8204 23.1790 H 0 0 0 0 0
|
| 82 |
+
64.2007 21.4272 25.9043 H 0 0 0 0 0
|
| 83 |
+
60.9927 16.4197 24.3959 H 0 0 0 0 0
|
| 84 |
+
60.0972 19.9811 25.8479 H 0 0 0 0 0
|
| 85 |
+
1 36 1 0 0 0
|
| 86 |
+
1 4 1 0 0 0
|
| 87 |
+
1 3 1 0 0 0
|
| 88 |
+
1 2 1 0 0 0
|
| 89 |
+
36 5 1 0 0 0
|
| 90 |
+
5 37 2 0 0 0
|
| 91 |
+
5 32 1 0 0 0
|
| 92 |
+
32 6 1 0 0 0
|
| 93 |
+
6 14 1 0 0 0
|
| 94 |
+
6 7 1 0 0 0
|
| 95 |
+
7 8 1 0 0 0
|
| 96 |
+
8 13 4 0 0 0
|
| 97 |
+
8 9 4 0 0 0
|
| 98 |
+
9 10 4 0 0 0
|
| 99 |
+
10 11 4 0 0 0
|
| 100 |
+
11 12 4 0 0 0
|
| 101 |
+
12 13 4 0 0 0
|
| 102 |
+
14 38 1 0 0 0
|
| 103 |
+
14 15 1 0 0 0
|
| 104 |
+
15 16 1 0 0 0
|
| 105 |
+
16 24 1 0 0 0
|
| 106 |
+
16 17 1 0 0 0
|
| 107 |
+
17 18 1 0 0 0
|
| 108 |
+
18 23 4 0 0 0
|
| 109 |
+
18 19 4 0 0 0
|
| 110 |
+
19 20 4 0 0 0
|
| 111 |
+
20 21 4 0 0 0
|
| 112 |
+
21 22 4 0 0 0
|
| 113 |
+
22 23 4 0 0 0
|
| 114 |
+
24 39 2 0 0 0
|
| 115 |
+
24 33 1 0 0 0
|
| 116 |
+
33 25 1 0 0 0
|
| 117 |
+
25 29 1 0 0 0
|
| 118 |
+
25 26 1 0 0 0
|
| 119 |
+
26 28 1 0 0 0
|
| 120 |
+
26 27 1 0 0 0
|
| 121 |
+
29 35 4 0 0 0
|
| 122 |
+
29 34 4 0 0 0
|
| 123 |
+
34 30 4 0 0 0
|
| 124 |
+
30 31 4 0 0 0
|
| 125 |
+
31 35 4 0 0 0
|
| 126 |
+
2 40 1 0 0 0
|
| 127 |
+
2 41 1 0 0 0
|
| 128 |
+
2 42 1 0 0 0
|
| 129 |
+
3 43 1 0 0 0
|
| 130 |
+
3 44 1 0 0 0
|
| 131 |
+
3 45 1 0 0 0
|
| 132 |
+
4 46 1 0 0 0
|
| 133 |
+
4 47 1 0 0 0
|
| 134 |
+
4 48 1 0 0 0
|
| 135 |
+
6 49 1 0 0 0
|
| 136 |
+
7 50 1 0 0 0
|
| 137 |
+
7 51 1 0 0 0
|
| 138 |
+
9 52 1 0 0 0
|
| 139 |
+
10 53 1 0 0 0
|
| 140 |
+
11 54 1 0 0 0
|
| 141 |
+
12 55 1 0 0 0
|
| 142 |
+
13 56 1 0 0 0
|
| 143 |
+
14 57 1 0 0 0
|
| 144 |
+
15 58 1 0 0 0
|
| 145 |
+
15 59 1 0 0 0
|
| 146 |
+
16 60 1 0 0 0
|
| 147 |
+
17 61 1 0 0 0
|
| 148 |
+
17 62 1 0 0 0
|
| 149 |
+
19 63 1 0 0 0
|
| 150 |
+
20 64 1 0 0 0
|
| 151 |
+
21 65 1 0 0 0
|
| 152 |
+
22 66 1 0 0 0
|
| 153 |
+
23 67 1 0 0 0
|
| 154 |
+
25 68 1 0 0 0
|
| 155 |
+
26 69 1 0 0 0
|
| 156 |
+
27 70 1 0 0 0
|
| 157 |
+
27 71 1 0 0 0
|
| 158 |
+
27 72 1 0 0 0
|
| 159 |
+
28 73 1 0 0 0
|
| 160 |
+
28 74 1 0 0 0
|
| 161 |
+
28 75 1 0 0 0
|
| 162 |
+
30 76 1 0 0 0
|
| 163 |
+
31 77 1 0 0 0
|
| 164 |
+
32 78 1 0 0 0
|
| 165 |
+
33 79 1 0 0 0
|
| 166 |
+
38 80 1 0 0 0
|
| 167 |
+
M END
|
| 168 |
+
$$$$
|
1tcw/1tcw_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1tcw/1tcw_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1thz/1thz_ligand.mol2
ADDED
|
@@ -0,0 +1,110 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:51 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1thz_ligand
|
| 7 |
+
46 48 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 -14.4830 -23.2740 -20.6930 C.ar 1 326 -0.0520
|
| 14 |
+
2 C2 -14.6030 -23.4350 -22.0820 C.ar 1 326 0.0291
|
| 15 |
+
3 C3 -13.9750 -22.5280 -22.9990 C.ar 1 326 -0.0608
|
| 16 |
+
4 C4 -13.2040 -21.4270 -22.4870 C.ar 1 326 -0.0433
|
| 17 |
+
5 C5 -13.0490 -21.2100 -21.0600 C.ar 1 326 0.0997
|
| 18 |
+
6 C6 -13.7200 -22.1770 -20.1600 C.ar 1 326 -0.0199
|
| 19 |
+
7 S7 -15.5360 -24.7560 -22.7770 S.o2 1 326 -0.1716
|
| 20 |
+
8 O8 -16.1510 -25.6780 -21.6370 O.co2 1 326 -0.4817
|
| 21 |
+
9 O9 -14.7040 -25.6470 -23.8140 O.co2 1 326 -0.4817
|
| 22 |
+
10 O10 -16.6470 -24.2380 -23.9300 O.co2 1 326 -0.4817
|
| 23 |
+
11 N11 -12.3700 -20.2180 -20.7100 N.am 1 326 -0.1117
|
| 24 |
+
12 N12 -12.6420 -18.9830 -21.2380 N.pl3 1 326 -0.1622
|
| 25 |
+
13 C13 -11.8540 -18.0380 -20.5770 C.2 1 326 0.1257
|
| 26 |
+
14 C14 -11.0870 -18.7060 -19.6340 C.2 1 326 0.1688
|
| 27 |
+
15 C15 -11.4010 -20.0620 -19.7330 C.2 1 326 0.2462
|
| 28 |
+
16 C17 -13.7290 -22.1810 -18.5550 C.3 1 326 -0.0350
|
| 29 |
+
17 O17 -10.8740 -21.0760 -18.9830 O.2 1 326 -0.3955
|
| 30 |
+
18 N19 -9.5180 -18.6910 -17.9140 N.2 1 326 -0.2214
|
| 31 |
+
19 N20 -10.1900 -18.1090 -18.7360 N.2 1 326 -0.2084
|
| 32 |
+
20 C21 -11.8800 -16.5350 -20.8710 C.3 1 326 0.0205
|
| 33 |
+
21 O22 -8.4610 -21.2510 -16.8270 O.co2 1 326 -0.5616
|
| 34 |
+
22 C23 -7.8160 -20.6360 -15.9870 C.2 1 326 0.0624
|
| 35 |
+
23 C24 -7.9460 -19.0990 -15.9070 C.ar 1 326 0.0275
|
| 36 |
+
24 C25 -8.7240 -18.2120 -16.8160 C.ar 1 326 0.0615
|
| 37 |
+
25 O26 -7.0200 -21.3060 -15.1830 O.co2 1 326 -0.5616
|
| 38 |
+
26 C27 -7.2400 -18.4480 -14.8180 C.ar 1 326 -0.0468
|
| 39 |
+
27 C28 -7.3120 -17.0250 -14.6530 C.ar 1 326 -0.0383
|
| 40 |
+
28 C29 -8.0860 -16.2350 -15.5790 C.ar 1 326 0.0532
|
| 41 |
+
29 C30 -8.7580 -16.8400 -16.6200 C.ar 1 326 -0.0186
|
| 42 |
+
30 S31 -8.1970 -14.5410 -15.3950 S.o2 1 326 -0.1623
|
| 43 |
+
31 O32 -7.9500 -14.1550 -13.9550 O.co2 1 326 -0.4795
|
| 44 |
+
32 O33 -9.5950 -14.0040 -15.9420 O.co2 1 326 -0.4795
|
| 45 |
+
33 O34 -7.1710 -13.6720 -16.0930 O.co2 1 326 -0.4795
|
| 46 |
+
34 H1 -14.9650 -23.9759 -20.0221 H 1 326 0.0530
|
| 47 |
+
35 H2 -14.0806 -22.6711 -24.0683 H 1 326 0.0538
|
| 48 |
+
36 H3 -12.7283 -20.7444 -23.1818 H 1 326 0.0481
|
| 49 |
+
37 H4 -13.3133 -18.7853 -21.9937 H 1 326 0.2398
|
| 50 |
+
38 H5 -14.3202 -23.0354 -18.1938 H 1 326 0.0362
|
| 51 |
+
39 H6 -14.1757 -21.2450 -18.1885 H 1 326 0.0362
|
| 52 |
+
40 H7 -12.6974 -22.2654 -18.1827 H 1 326 0.0362
|
| 53 |
+
41 H8 -11.1660 -16.0200 -20.2115 H 1 326 0.0552
|
| 54 |
+
42 H9 -12.8924 -16.1438 -20.6919 H 1 326 0.0552
|
| 55 |
+
43 H10 -11.6003 -16.3618 -21.9206 H 1 326 0.0552
|
| 56 |
+
44 H11 -6.6546 -19.0414 -14.1250 H 1 326 0.0647
|
| 57 |
+
45 H12 -6.7866 -16.5450 -13.8353 H 1 326 0.0625
|
| 58 |
+
46 H13 -9.3297 -16.2247 -17.3053 H 1 326 0.0640
|
| 59 |
+
@<TRIPOS>BOND
|
| 60 |
+
1 1 2 ar
|
| 61 |
+
2 6 1 ar
|
| 62 |
+
3 3 2 ar
|
| 63 |
+
4 2 7 1
|
| 64 |
+
5 4 3 ar
|
| 65 |
+
6 5 4 ar
|
| 66 |
+
7 5 6 ar
|
| 67 |
+
8 11 5 1
|
| 68 |
+
9 6 16 1
|
| 69 |
+
10 7 8 ar
|
| 70 |
+
11 7 9 ar
|
| 71 |
+
12 7 10 ar
|
| 72 |
+
13 11 12 1
|
| 73 |
+
14 15 11 am
|
| 74 |
+
15 13 12 1
|
| 75 |
+
16 14 13 2
|
| 76 |
+
17 13 20 1
|
| 77 |
+
18 14 15 1
|
| 78 |
+
19 19 14 1
|
| 79 |
+
20 15 17 2
|
| 80 |
+
21 18 19 2
|
| 81 |
+
22 24 18 1
|
| 82 |
+
23 22 21 ar
|
| 83 |
+
24 23 22 1
|
| 84 |
+
25 22 25 ar
|
| 85 |
+
26 23 24 ar
|
| 86 |
+
27 23 26 ar
|
| 87 |
+
28 24 29 ar
|
| 88 |
+
29 26 27 ar
|
| 89 |
+
30 27 28 ar
|
| 90 |
+
31 28 29 ar
|
| 91 |
+
32 28 30 1
|
| 92 |
+
33 30 31 ar
|
| 93 |
+
34 30 32 ar
|
| 94 |
+
35 30 33 ar
|
| 95 |
+
36 1 34 1
|
| 96 |
+
37 3 35 1
|
| 97 |
+
38 4 36 1
|
| 98 |
+
39 12 37 1
|
| 99 |
+
40 16 38 1
|
| 100 |
+
41 16 39 1
|
| 101 |
+
42 16 40 1
|
| 102 |
+
43 20 41 1
|
| 103 |
+
44 20 42 1
|
| 104 |
+
45 20 43 1
|
| 105 |
+
46 26 44 1
|
| 106 |
+
47 27 45 1
|
| 107 |
+
48 29 46 1
|
| 108 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 109 |
+
1 326 1
|
| 110 |
+
|
1thz/1thz_ligand.sdf
ADDED
|
@@ -0,0 +1,106 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1thz_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
49 51 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-14.4830 -23.2740 -20.6930 C 0 0 0 0 0
|
| 6 |
+
-14.6030 -23.4350 -22.0820 C 0 0 0 0 0
|
| 7 |
+
-13.9750 -22.5280 -22.9990 C 0 0 0 0 0
|
| 8 |
+
-13.2040 -21.4270 -22.4870 C 0 0 0 0 0
|
| 9 |
+
-13.0490 -21.2100 -21.0600 C 0 0 0 0 0
|
| 10 |
+
-13.7200 -22.1770 -20.1600 C 0 0 0 0 0
|
| 11 |
+
-15.5360 -24.7560 -22.7770 S 0 0 0 0 0
|
| 12 |
+
-16.1510 -25.6780 -21.6370 O 0 0 0 0 0
|
| 13 |
+
-14.7040 -25.6470 -23.8140 O 0 0 0 0 0
|
| 14 |
+
-16.6470 -24.2380 -23.9300 O 0 0 0 0 0
|
| 15 |
+
-12.3700 -20.2180 -20.7100 N 0 0 0 0 0
|
| 16 |
+
-12.6420 -18.9830 -21.2380 N 0 0 0 0 0
|
| 17 |
+
-11.8540 -18.0380 -20.5770 C 0 0 0 0 0
|
| 18 |
+
-11.0870 -18.7060 -19.6340 C 0 0 0 0 0
|
| 19 |
+
-11.4010 -20.0620 -19.7330 C 0 0 0 0 0
|
| 20 |
+
-13.7290 -22.1810 -18.5550 C 0 0 0 0 0
|
| 21 |
+
-10.8740 -21.0760 -18.9830 O 0 0 0 0 0
|
| 22 |
+
-9.5180 -18.6910 -17.9140 N 0 0 0 0 0
|
| 23 |
+
-10.1900 -18.1090 -18.7360 N 0 0 0 0 0
|
| 24 |
+
-11.8800 -16.5350 -20.8710 C 0 0 0 0 0
|
| 25 |
+
-8.4610 -21.2510 -16.8270 O 0 0 0 0 0
|
| 26 |
+
-7.8160 -20.6360 -15.9870 C 0 0 0 0 0
|
| 27 |
+
-7.9460 -19.0990 -15.9070 C 0 0 0 0 0
|
| 28 |
+
-8.7240 -18.2120 -16.8160 C 0 0 0 0 0
|
| 29 |
+
-7.0200 -21.3060 -15.1830 O 0 0 0 0 0
|
| 30 |
+
-7.2400 -18.4480 -14.8180 C 0 0 0 0 0
|
| 31 |
+
-7.3120 -17.0250 -14.6530 C 0 0 0 0 0
|
| 32 |
+
-8.0860 -16.2350 -15.5790 C 0 0 0 0 0
|
| 33 |
+
-8.7580 -16.8400 -16.6200 C 0 0 0 0 0
|
| 34 |
+
-8.1970 -14.5410 -15.3950 S 0 0 0 0 0
|
| 35 |
+
-7.9500 -14.1550 -13.9550 O 0 0 0 0 0
|
| 36 |
+
-9.5950 -14.0040 -15.9420 O 0 0 0 0 0
|
| 37 |
+
-7.1710 -13.6720 -16.0930 O 0 0 0 0 0
|
| 38 |
+
-14.9677 -23.9798 -20.0184 H 0 0 0 0 0
|
| 39 |
+
-14.0812 -22.6719 -24.0742 H 0 0 0 0 0
|
| 40 |
+
-12.7257 -20.7406 -23.1857 H 0 0 0 0 0
|
| 41 |
+
-16.2005 -23.6898 -24.5794 H 0 0 0 0 0
|
| 42 |
+
-13.3068 -18.7872 -21.9864 H 0 0 0 0 0
|
| 43 |
+
-14.7554 -22.0942 -18.1985 H 0 0 0 0 0
|
| 44 |
+
-13.2948 -23.1129 -18.1928 H 0 0 0 0 0
|
| 45 |
+
-13.1429 -21.3386 -18.1876 H 0 0 0 0 0
|
| 46 |
+
-12.1806 -15.9955 -19.9728 H 0 0 0 0 0
|
| 47 |
+
-10.8860 -16.2087 -21.1768 H 0 0 0 0 0
|
| 48 |
+
-12.5918 -16.3350 -21.6719 H 0 0 0 0 0
|
| 49 |
+
-6.5844 -20.6953 -14.5839 H 0 0 0 0 0
|
| 50 |
+
-6.6513 -19.0447 -14.1212 H 0 0 0 0 0
|
| 51 |
+
-6.7837 -16.5423 -13.8308 H 0 0 0 0 0
|
| 52 |
+
-9.3329 -16.2213 -17.3091 H 0 0 0 0 0
|
| 53 |
+
-9.7045 -14.2740 -16.8567 H 0 0 0 0 0
|
| 54 |
+
1 2 4 0 0 0
|
| 55 |
+
6 1 4 0 0 0
|
| 56 |
+
3 2 4 0 0 0
|
| 57 |
+
2 7 1 0 0 0
|
| 58 |
+
4 3 4 0 0 0
|
| 59 |
+
5 4 4 0 0 0
|
| 60 |
+
5 6 4 0 0 0
|
| 61 |
+
11 5 1 0 0 0
|
| 62 |
+
6 16 1 0 0 0
|
| 63 |
+
7 8 2 0 0 0
|
| 64 |
+
7 9 2 0 0 0
|
| 65 |
+
7 10 1 0 0 0
|
| 66 |
+
11 12 1 0 0 0
|
| 67 |
+
15 11 1 0 0 0
|
| 68 |
+
13 12 1 0 0 0
|
| 69 |
+
14 13 2 0 0 0
|
| 70 |
+
13 20 1 0 0 0
|
| 71 |
+
14 15 1 0 0 0
|
| 72 |
+
19 14 1 0 0 0
|
| 73 |
+
15 17 2 0 0 0
|
| 74 |
+
18 19 2 0 0 0
|
| 75 |
+
24 18 1 0 0 0
|
| 76 |
+
22 21 2 0 0 0
|
| 77 |
+
23 22 1 0 0 0
|
| 78 |
+
22 25 1 0 0 0
|
| 79 |
+
23 24 4 0 0 0
|
| 80 |
+
23 26 4 0 0 0
|
| 81 |
+
24 29 4 0 0 0
|
| 82 |
+
26 27 4 0 0 0
|
| 83 |
+
27 28 4 0 0 0
|
| 84 |
+
28 29 4 0 0 0
|
| 85 |
+
28 30 1 0 0 0
|
| 86 |
+
30 31 2 0 0 0
|
| 87 |
+
30 32 1 0 0 0
|
| 88 |
+
30 33 2 0 0 0
|
| 89 |
+
1 34 1 0 0 0
|
| 90 |
+
3 35 1 0 0 0
|
| 91 |
+
4 36 1 0 0 0
|
| 92 |
+
10 37 1 0 0 0
|
| 93 |
+
12 38 1 0 0 0
|
| 94 |
+
16 39 1 0 0 0
|
| 95 |
+
16 40 1 0 0 0
|
| 96 |
+
16 41 1 0 0 0
|
| 97 |
+
20 42 1 0 0 0
|
| 98 |
+
20 43 1 0 0 0
|
| 99 |
+
20 44 1 0 0 0
|
| 100 |
+
25 45 1 0 0 0
|
| 101 |
+
26 46 1 0 0 0
|
| 102 |
+
27 47 1 0 0 0
|
| 103 |
+
29 48 1 0 0 0
|
| 104 |
+
32 49 1 0 0 0
|
| 105 |
+
M END
|
| 106 |
+
$$$$
|
1thz/1thz_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1thz/1thz_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1xpc/1xpc_ligand.mol2
ADDED
|
@@ -0,0 +1,146 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:51 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1xpc_ligand
|
| 7 |
+
63 67 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 31.2360 -0.3230 28.9130 C.3 1 AIT 0.0833
|
| 14 |
+
2 C2 31.3560 -1.7210 28.2890 C.3 1 AIT 0.1278
|
| 15 |
+
3 O3 30.1370 -2.4730 28.5440 O.3 1 AIT -0.3110
|
| 16 |
+
4 C4 28.9570 -1.9550 28.1010 C.ar 1 AIT 0.0950
|
| 17 |
+
5 C5 28.0570 -2.9720 27.7510 C.ar 1 AIT -0.0469
|
| 18 |
+
6 C6 26.8160 -2.6120 27.2910 C.ar 1 AIT -0.0488
|
| 19 |
+
7 C7 26.4850 -1.2490 27.1580 C.ar 1 AIT 0.0705
|
| 20 |
+
8 O8 25.2240 -1.0180 26.7530 O.3 1 AIT -0.3420
|
| 21 |
+
9 C9 27.3860 -0.2500 27.5540 C.ar 1 AIT -0.0295
|
| 22 |
+
10 C10 28.6760 -0.5870 27.9840 C.ar 1 AIT 0.0387
|
| 23 |
+
11 S11 29.7200 0.4830 28.3560 S.3 1 AIT -0.0894
|
| 24 |
+
12 C12 32.5450 0.3830 28.6300 C.ar 1 AIT -0.0343
|
| 25 |
+
13 C13 32.7400 1.2430 27.5380 C.ar 1 AIT -0.0673
|
| 26 |
+
14 C14 33.9970 1.8250 27.3600 C.ar 1 AIT -0.0398
|
| 27 |
+
15 C15 35.0610 1.5840 28.2530 C.ar 1 AIT 0.0805
|
| 28 |
+
16 O16 36.2770 2.1500 28.0980 O.3 1 AIT -0.3376
|
| 29 |
+
17 C17 34.8610 0.7370 29.3560 C.ar 1 AIT -0.0398
|
| 30 |
+
18 C18 33.5910 0.1750 29.5280 C.ar 1 AIT -0.0673
|
| 31 |
+
19 C19 31.7050 -1.8730 26.8200 C.ar 1 AIT -0.0182
|
| 32 |
+
20 C20 32.6080 -2.8710 26.4350 C.ar 1 AIT -0.0658
|
| 33 |
+
21 C21 32.9890 -3.1360 25.1010 C.ar 1 AIT -0.0395
|
| 34 |
+
22 C22 32.4950 -2.3050 24.0900 C.ar 1 AIT 0.0843
|
| 35 |
+
23 C23 31.5950 -1.2900 24.4580 C.ar 1 AIT -0.0395
|
| 36 |
+
24 C24 31.1880 -1.0920 25.7670 C.ar 1 AIT -0.0658
|
| 37 |
+
25 O25 32.7880 -2.4670 22.7870 O.3 1 AIT -0.3169
|
| 38 |
+
26 C26 33.2980 -3.7290 22.3210 C.3 1 AIT 0.1112
|
| 39 |
+
27 C27 33.6970 -3.6680 20.8220 C.3 1 AIT 0.0044
|
| 40 |
+
28 C28 34.6260 -4.8430 20.6060 C.3 1 AIT -0.0191
|
| 41 |
+
29 N29 32.5710 -3.8810 19.8960 N.4 1 AIT 0.2391
|
| 42 |
+
30 C30 32.7060 -3.1840 18.5880 C.3 1 AIT -0.0314
|
| 43 |
+
31 C31 31.2640 -2.9080 18.1050 C.3 1 AIT -0.0077
|
| 44 |
+
32 C32 30.3740 -3.4510 19.2220 C.3 1 AIT -0.0077
|
| 45 |
+
33 C33 31.3250 -3.3590 20.4480 C.3 1 AIT -0.0314
|
| 46 |
+
34 H1 31.1513 -0.4292 30.0046 H 1 AIT 0.0625
|
| 47 |
+
35 H2 32.1725 -2.2134 28.8375 H 1 AIT 0.0819
|
| 48 |
+
36 H3 28.3350 -4.0158 27.8417 H 1 AIT 0.0496
|
| 49 |
+
37 H4 26.0912 -3.3747 27.0303 H 1 AIT 0.0458
|
| 50 |
+
38 H5 25.0868 -1.4202 25.9033 H 1 AIT 0.2443
|
| 51 |
+
39 H6 27.0822 0.7902 27.5272 H 1 AIT 0.0461
|
| 52 |
+
40 H7 31.9313 1.4512 26.8468 H 1 AIT 0.0530
|
| 53 |
+
41 H8 34.1590 2.4802 26.5117 H 1 AIT 0.0525
|
| 54 |
+
42 H9 36.8504 1.8629 28.7989 H 1 AIT 0.2458
|
| 55 |
+
43 H10 35.6650 0.5256 30.0517 H 1 AIT 0.0525
|
| 56 |
+
44 H11 33.4129 -0.4487 30.3965 H 1 AIT 0.0530
|
| 57 |
+
45 H12 33.0454 -3.4833 27.2153 H 1 AIT 0.0531
|
| 58 |
+
46 H13 33.6485 -3.9636 24.8662 H 1 AIT 0.0525
|
| 59 |
+
47 H14 31.2040 -0.6363 23.6868 H 1 AIT 0.0525
|
| 60 |
+
48 H15 30.4577 -0.3214 25.9858 H 1 AIT 0.0531
|
| 61 |
+
49 H16 32.5222 -4.4976 22.4525 H 1 AIT 0.0668
|
| 62 |
+
50 H17 34.1841 -3.9969 22.9152 H 1 AIT 0.0668
|
| 63 |
+
51 H18 34.1910 -2.7103 20.6012 H 1 AIT 0.0875
|
| 64 |
+
52 H19 34.9525 -4.8640 19.5558 H 1 AIT 0.0285
|
| 65 |
+
53 H20 34.0968 -5.7775 20.8442 H 1 AIT 0.0285
|
| 66 |
+
54 H21 35.5039 -4.7416 21.2609 H 1 AIT 0.0285
|
| 67 |
+
55 H22 32.4864 -4.8727 19.7363 H 1 AIT 0.2037
|
| 68 |
+
56 H23 33.2355 -3.8235 17.8664 H 1 AIT 0.0814
|
| 69 |
+
57 H24 33.2552 -2.2391 18.7127 H 1 AIT 0.0814
|
| 70 |
+
58 H25 31.0639 -3.4327 17.1591 H 1 AIT 0.0319
|
| 71 |
+
59 H26 31.1001 -1.8290 17.9676 H 1 AIT 0.0319
|
| 72 |
+
60 H27 30.0712 -4.4901 19.0254 H 1 AIT 0.0319
|
| 73 |
+
61 H28 29.4781 -2.8280 19.3608 H 1 AIT 0.0319
|
| 74 |
+
62 H29 31.4415 -2.3193 20.7879 H 1 AIT 0.0814
|
| 75 |
+
63 H30 30.9650 -3.9793 21.2820 H 1 AIT 0.0814
|
| 76 |
+
@<TRIPOS>BOND
|
| 77 |
+
1 1 2 1
|
| 78 |
+
2 1 11 1
|
| 79 |
+
3 1 12 1
|
| 80 |
+
4 2 3 1
|
| 81 |
+
5 2 19 1
|
| 82 |
+
6 3 4 1
|
| 83 |
+
7 4 5 ar
|
| 84 |
+
8 4 10 ar
|
| 85 |
+
9 5 6 ar
|
| 86 |
+
10 6 7 ar
|
| 87 |
+
11 7 8 1
|
| 88 |
+
12 7 9 ar
|
| 89 |
+
13 9 10 ar
|
| 90 |
+
14 10 11 1
|
| 91 |
+
15 12 13 ar
|
| 92 |
+
16 12 18 ar
|
| 93 |
+
17 13 14 ar
|
| 94 |
+
18 14 15 ar
|
| 95 |
+
19 15 16 1
|
| 96 |
+
20 15 17 ar
|
| 97 |
+
21 17 18 ar
|
| 98 |
+
22 19 20 ar
|
| 99 |
+
23 19 24 ar
|
| 100 |
+
24 20 21 ar
|
| 101 |
+
25 21 22 ar
|
| 102 |
+
26 22 23 ar
|
| 103 |
+
27 22 25 1
|
| 104 |
+
28 23 24 ar
|
| 105 |
+
29 25 26 1
|
| 106 |
+
30 26 27 1
|
| 107 |
+
31 27 28 1
|
| 108 |
+
32 27 29 1
|
| 109 |
+
33 29 30 1
|
| 110 |
+
34 29 33 1
|
| 111 |
+
35 30 31 1
|
| 112 |
+
36 31 32 1
|
| 113 |
+
37 32 33 1
|
| 114 |
+
38 1 34 1
|
| 115 |
+
39 2 35 1
|
| 116 |
+
40 5 36 1
|
| 117 |
+
41 6 37 1
|
| 118 |
+
42 8 38 1
|
| 119 |
+
43 9 39 1
|
| 120 |
+
44 13 40 1
|
| 121 |
+
45 14 41 1
|
| 122 |
+
46 16 42 1
|
| 123 |
+
47 17 43 1
|
| 124 |
+
48 18 44 1
|
| 125 |
+
49 20 45 1
|
| 126 |
+
50 21 46 1
|
| 127 |
+
51 23 47 1
|
| 128 |
+
52 24 48 1
|
| 129 |
+
53 26 49 1
|
| 130 |
+
54 26 50 1
|
| 131 |
+
55 27 51 1
|
| 132 |
+
56 28 52 1
|
| 133 |
+
57 28 53 1
|
| 134 |
+
58 28 54 1
|
| 135 |
+
59 29 55 1
|
| 136 |
+
60 30 56 1
|
| 137 |
+
61 30 57 1
|
| 138 |
+
62 31 58 1
|
| 139 |
+
63 31 59 1
|
| 140 |
+
64 32 60 1
|
| 141 |
+
65 32 61 1
|
| 142 |
+
66 33 62 1
|
| 143 |
+
67 33 63 1
|
| 144 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 145 |
+
1 AIT 1
|
| 146 |
+
|
1xpc/1xpc_ligand.sdf
ADDED
|
@@ -0,0 +1,136 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1xpc_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
63 67 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
31.2360 -0.3230 28.9130 C 0 0 0 0 0
|
| 6 |
+
31.3560 -1.7210 28.2890 C 0 0 0 0 0
|
| 7 |
+
30.1370 -2.4730 28.5440 O 0 0 0 0 0
|
| 8 |
+
28.9570 -1.9550 28.1010 C 0 0 0 0 0
|
| 9 |
+
28.0570 -2.9720 27.7510 C 0 0 0 0 0
|
| 10 |
+
26.8160 -2.6120 27.2910 C 0 0 0 0 0
|
| 11 |
+
26.4850 -1.2490 27.1580 C 0 0 0 0 0
|
| 12 |
+
25.2240 -1.0180 26.7530 O 0 0 0 0 0
|
| 13 |
+
27.3860 -0.2500 27.5540 C 0 0 0 0 0
|
| 14 |
+
28.6760 -0.5870 27.9840 C 0 0 0 0 0
|
| 15 |
+
29.7200 0.4830 28.3560 S 0 0 0 0 0
|
| 16 |
+
32.5450 0.3830 28.6300 C 0 0 0 0 0
|
| 17 |
+
32.7400 1.2430 27.5380 C 0 0 0 0 0
|
| 18 |
+
33.9970 1.8250 27.3600 C 0 0 0 0 0
|
| 19 |
+
35.0610 1.5840 28.2530 C 0 0 0 0 0
|
| 20 |
+
36.2770 2.1500 28.0980 O 0 0 0 0 0
|
| 21 |
+
34.8610 0.7370 29.3560 C 0 0 0 0 0
|
| 22 |
+
33.5910 0.1750 29.5280 C 0 0 0 0 0
|
| 23 |
+
31.7050 -1.8730 26.8200 C 0 0 0 0 0
|
| 24 |
+
32.6080 -2.8710 26.4350 C 0 0 0 0 0
|
| 25 |
+
32.9890 -3.1360 25.1010 C 0 0 0 0 0
|
| 26 |
+
32.4950 -2.3050 24.0900 C 0 0 0 0 0
|
| 27 |
+
31.5950 -1.2900 24.4580 C 0 0 0 0 0
|
| 28 |
+
31.1880 -1.0920 25.7670 C 0 0 0 0 0
|
| 29 |
+
32.7880 -2.4670 22.7870 O 0 0 0 0 0
|
| 30 |
+
33.2980 -3.7290 22.3210 C 0 0 0 0 0
|
| 31 |
+
33.6970 -3.6680 20.8220 C 0 0 0 0 0
|
| 32 |
+
34.6260 -4.8430 20.6060 C 0 0 0 0 0
|
| 33 |
+
32.5710 -3.8810 19.8960 N 0 3 0 0 0
|
| 34 |
+
32.7060 -3.1840 18.5880 C 0 0 0 0 0
|
| 35 |
+
31.2640 -2.9080 18.1050 C 0 0 0 0 0
|
| 36 |
+
30.3740 -3.4510 19.2220 C 0 0 0 0 0
|
| 37 |
+
31.3250 -3.3590 20.4480 C 0 0 0 0 0
|
| 38 |
+
31.1124 -0.3260 29.9960 H 0 0 0 0 0
|
| 39 |
+
32.2460 -2.1015 28.7903 H 0 0 0 0 0
|
| 40 |
+
28.3365 -4.0216 27.8422 H 0 0 0 0 0
|
| 41 |
+
26.0872 -3.3790 27.0288 H 0 0 0 0 0
|
| 42 |
+
25.0785 -0.0714 26.6874 H 0 0 0 0 0
|
| 43 |
+
27.0805 0.7960 27.5270 H 0 0 0 0 0
|
| 44 |
+
31.9268 1.4524 26.8430 H 0 0 0 0 0
|
| 45 |
+
34.1599 2.4838 26.5070 H 0 0 0 0 0
|
| 46 |
+
36.8564 1.8598 28.8063 H 0 0 0 0 0
|
| 47 |
+
35.6694 0.5244 30.0556 H 0 0 0 0 0
|
| 48 |
+
33.4119 -0.4521 30.4013 H 0 0 0 0 0
|
| 49 |
+
33.0479 -3.4867 27.2196 H 0 0 0 0 0
|
| 50 |
+
33.6522 -3.9682 24.8649 H 0 0 0 0 0
|
| 51 |
+
31.2018 -0.6327 23.6825 H 0 0 0 0 0
|
| 52 |
+
30.4536 -0.3171 25.9870 H 0 0 0 0 0
|
| 53 |
+
32.5167 -4.4799 22.4384 H 0 0 0 0 0
|
| 54 |
+
34.1856 -3.9771 22.9031 H 0 0 0 0 0
|
| 55 |
+
34.1155 -2.6816 20.6223 H 0 0 0 0 0
|
| 56 |
+
35.4954 -4.7413 21.2555 H 0 0 0 0 0
|
| 57 |
+
34.1005 -5.7682 20.8424 H 0 0 0 0 0
|
| 58 |
+
34.9488 -4.8628 19.5651 H 0 0 0 0 0
|
| 59 |
+
32.5698 -4.8923 19.7628 H 0 0 0 0 0
|
| 60 |
+
33.2543 -3.7933 17.8695 H 0 0 0 0 0
|
| 61 |
+
33.2735 -2.2589 18.6891 H 0 0 0 0 0
|
| 62 |
+
31.0556 -3.3868 17.1482 H 0 0 0 0 0
|
| 63 |
+
31.0903 -1.8472 17.9243 H 0 0 0 0 0
|
| 64 |
+
30.0018 -4.4579 19.0330 H 0 0 0 0 0
|
| 65 |
+
29.4444 -2.8960 19.3481 H 0 0 0 0 0
|
| 66 |
+
31.4174 -2.3506 20.8515 H 0 0 0 0 0
|
| 67 |
+
30.9689 -3.9130 21.3166 H 0 0 0 0 0
|
| 68 |
+
1 2 1 0 0 0
|
| 69 |
+
1 11 1 0 0 0
|
| 70 |
+
1 12 1 0 0 0
|
| 71 |
+
2 3 1 0 0 0
|
| 72 |
+
2 19 1 0 0 0
|
| 73 |
+
3 4 1 0 0 0
|
| 74 |
+
4 5 4 0 0 0
|
| 75 |
+
4 10 4 0 0 0
|
| 76 |
+
5 6 4 0 0 0
|
| 77 |
+
6 7 4 0 0 0
|
| 78 |
+
7 8 1 0 0 0
|
| 79 |
+
7 9 4 0 0 0
|
| 80 |
+
9 10 4 0 0 0
|
| 81 |
+
10 11 1 0 0 0
|
| 82 |
+
12 13 4 0 0 0
|
| 83 |
+
12 18 4 0 0 0
|
| 84 |
+
13 14 4 0 0 0
|
| 85 |
+
14 15 4 0 0 0
|
| 86 |
+
15 16 1 0 0 0
|
| 87 |
+
15 17 4 0 0 0
|
| 88 |
+
17 18 4 0 0 0
|
| 89 |
+
19 20 4 0 0 0
|
| 90 |
+
19 24 4 0 0 0
|
| 91 |
+
20 21 4 0 0 0
|
| 92 |
+
21 22 4 0 0 0
|
| 93 |
+
22 23 4 0 0 0
|
| 94 |
+
22 25 1 0 0 0
|
| 95 |
+
23 24 4 0 0 0
|
| 96 |
+
25 26 1 0 0 0
|
| 97 |
+
26 27 1 0 0 0
|
| 98 |
+
27 28 1 0 0 0
|
| 99 |
+
27 29 1 0 0 0
|
| 100 |
+
29 30 1 0 0 0
|
| 101 |
+
29 33 1 0 0 0
|
| 102 |
+
30 31 1 0 0 0
|
| 103 |
+
31 32 1 0 0 0
|
| 104 |
+
32 33 1 0 0 0
|
| 105 |
+
1 34 1 0 0 0
|
| 106 |
+
2 35 1 0 0 0
|
| 107 |
+
5 36 1 0 0 0
|
| 108 |
+
6 37 1 0 0 0
|
| 109 |
+
8 38 1 0 0 0
|
| 110 |
+
9 39 1 0 0 0
|
| 111 |
+
13 40 1 0 0 0
|
| 112 |
+
14 41 1 0 0 0
|
| 113 |
+
16 42 1 0 0 0
|
| 114 |
+
17 43 1 0 0 0
|
| 115 |
+
18 44 1 0 0 0
|
| 116 |
+
20 45 1 0 0 0
|
| 117 |
+
21 46 1 0 0 0
|
| 118 |
+
23 47 1 0 0 0
|
| 119 |
+
24 48 1 0 0 0
|
| 120 |
+
26 49 1 0 0 0
|
| 121 |
+
26 50 1 0 0 0
|
| 122 |
+
27 51 1 0 0 0
|
| 123 |
+
28 52 1 0 0 0
|
| 124 |
+
28 53 1 0 0 0
|
| 125 |
+
28 54 1 0 0 0
|
| 126 |
+
29 55 1 0 0 0
|
| 127 |
+
30 56 1 0 0 0
|
| 128 |
+
30 57 1 0 0 0
|
| 129 |
+
31 58 1 0 0 0
|
| 130 |
+
31 59 1 0 0 0
|
| 131 |
+
32 60 1 0 0 0
|
| 132 |
+
32 61 1 0 0 0
|
| 133 |
+
33 62 1 0 0 0
|
| 134 |
+
33 63 1 0 0 0
|
| 135 |
+
M END
|
| 136 |
+
$$$$
|
1xpc/1xpc_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1xpc/1xpc_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1y6a/1y6a_ligand.mol2
ADDED
|
@@ -0,0 +1,123 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1y6a_ligand
|
| 7 |
+
52 55 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 O4 -0.2730 29.6670 22.7710 O.2 1 AAZ -0.1709
|
| 14 |
+
2 S3 -0.4270 29.9540 21.3770 S.o2 1 AAZ -0.0106
|
| 15 |
+
3 O5 0.0570 31.2530 21.0240 O.2 1 AAZ -0.1709
|
| 16 |
+
4 C2 -2.0600 29.9360 21.0470 C.3 1 AAZ 0.0665
|
| 17 |
+
5 C1 -2.3170 29.7940 19.5600 C.3 1 AAZ -0.0455
|
| 18 |
+
6 C6 0.3640 28.7510 20.6130 C.ar 1 AAZ 0.0674
|
| 19 |
+
7 C7 0.0070 27.4350 20.9020 C.ar 1 AAZ -0.0577
|
| 20 |
+
8 C8 0.6640 26.3600 20.2920 C.ar 1 AAZ -0.0405
|
| 21 |
+
9 C9 1.6950 26.5740 19.3650 C.ar 1 AAZ 0.1151
|
| 22 |
+
10 O10 2.3450 25.5330 18.7420 O.3 1 AAZ -0.3253
|
| 23 |
+
11 C11 2.1930 24.1360 19.0580 C.3 1 AAZ 0.0569
|
| 24 |
+
12 C12 2.0920 27.8870 19.0640 C.ar 1 AAZ 0.0997
|
| 25 |
+
13 C31 1.4050 28.9620 19.6890 C.ar 1 AAZ -0.0216
|
| 26 |
+
14 N13 3.0060 28.0930 18.0510 N.pl3 1 AAZ -0.2231
|
| 27 |
+
15 C14 2.9010 29.1020 17.1830 C.2 1 AAZ 0.2923
|
| 28 |
+
16 N15 3.7780 29.4660 16.2370 N.2 1 AAZ -0.2988
|
| 29 |
+
17 C16 3.3460 30.5380 15.6730 C.2 1 AAZ -0.0104
|
| 30 |
+
18 C17 2.1770 30.9240 16.2160 C.2 1 AAZ 0.1310
|
| 31 |
+
19 O18 1.7930 30.0030 17.2280 O.3 1 AAZ -0.2055
|
| 32 |
+
20 C19 1.2200 32.0310 15.9260 C.ar 1 AAZ 0.0056
|
| 33 |
+
21 C20 1.3680 32.9450 14.8930 C.ar 1 AAZ -0.0563
|
| 34 |
+
22 C21 0.3690 33.9030 14.7000 C.ar 1 AAZ -0.0639
|
| 35 |
+
23 C22 -0.7820 33.9220 15.5170 C.ar 1 AAZ -0.0555
|
| 36 |
+
24 C23 -0.9380 32.9730 16.5340 C.ar 1 AAZ -0.0050
|
| 37 |
+
25 C24 0.0620 32.0450 16.7200 C.ar 1 AAZ -0.0469
|
| 38 |
+
26 C25 -2.1340 32.9830 17.4360 C.ar 1 AAZ 0.0514
|
| 39 |
+
27 C26 -3.3510 32.3840 17.0640 C.ar 1 AAZ -0.0271
|
| 40 |
+
28 C27 -4.4450 32.4480 17.9270 C.ar 1 AAZ -0.0422
|
| 41 |
+
29 C28 -4.3030 33.0910 19.1590 C.ar 1 AAZ -0.0345
|
| 42 |
+
30 C29 -3.0840 33.6790 19.5030 C.ar 1 AAZ 0.0100
|
| 43 |
+
31 N30 -2.0350 33.6120 18.6520 N.ar 1 AAZ -0.2919
|
| 44 |
+
32 H1 -2.5079 30.8765 21.4003 H 1 AAZ 0.0500
|
| 45 |
+
33 H2 -2.5232 29.0887 21.5737 H 1 AAZ 0.0500
|
| 46 |
+
34 H3 -3.4012 29.7853 19.3745 H 1 AAZ 0.0245
|
| 47 |
+
35 H4 -1.8759 28.8529 19.1999 H 1 AAZ 0.0245
|
| 48 |
+
36 H5 -1.8605 30.6407 19.0265 H 1 AAZ 0.0245
|
| 49 |
+
37 H6 -0.7911 27.2412 21.6095 H 1 AAZ 0.0509
|
| 50 |
+
38 H7 0.3715 25.3461 20.5398 H 1 AAZ 0.0507
|
| 51 |
+
39 H8 2.8368 23.5382 18.3960 H 1 AAZ 0.0573
|
| 52 |
+
40 H9 1.1435 23.8396 18.9143 H 1 AAZ 0.0573
|
| 53 |
+
41 H10 2.4827 23.9632 20.1050 H 1 AAZ 0.0573
|
| 54 |
+
42 H11 1.6920 29.9788 19.4463 H 1 AAZ 0.0520
|
| 55 |
+
43 H12 3.8001 27.4432 17.9610 H 1 AAZ 0.2181
|
| 56 |
+
44 H13 3.8566 31.0618 14.8662 H 1 AAZ 0.0518
|
| 57 |
+
45 H14 2.2398 32.9167 14.2494 H 1 AAZ 0.0596
|
| 58 |
+
46 H15 0.4793 34.6405 13.9133 H 1 AAZ 0.0609
|
| 59 |
+
47 H16 -1.5468 34.6732 15.3564 H 1 AAZ 0.0599
|
| 60 |
+
48 H17 -0.0480 31.3031 17.5027 H 1 AAZ 0.0604
|
| 61 |
+
49 H18 -3.4384 31.8749 16.1110 H 1 AAZ 0.0715
|
| 62 |
+
50 H19 -5.3932 32.0045 17.6453 H 1 AAZ 0.0735
|
| 63 |
+
51 H20 -5.1389 33.1335 19.8478 H 1 AAZ 0.0705
|
| 64 |
+
52 H21 -2.9784 34.1898 20.4533 H 1 AAZ 0.0826
|
| 65 |
+
@<TRIPOS>BOND
|
| 66 |
+
1 1 2 2
|
| 67 |
+
2 2 3 2
|
| 68 |
+
3 2 4 1
|
| 69 |
+
4 2 6 1
|
| 70 |
+
5 4 5 1
|
| 71 |
+
6 6 7 ar
|
| 72 |
+
7 6 13 ar
|
| 73 |
+
8 7 8 ar
|
| 74 |
+
9 8 9 ar
|
| 75 |
+
10 9 10 1
|
| 76 |
+
11 9 12 ar
|
| 77 |
+
12 10 11 1
|
| 78 |
+
13 12 13 ar
|
| 79 |
+
14 12 14 1
|
| 80 |
+
15 14 15 1
|
| 81 |
+
16 15 16 2
|
| 82 |
+
17 15 19 1
|
| 83 |
+
18 16 17 1
|
| 84 |
+
19 17 18 2
|
| 85 |
+
20 18 19 1
|
| 86 |
+
21 18 20 1
|
| 87 |
+
22 20 21 ar
|
| 88 |
+
23 20 25 ar
|
| 89 |
+
24 21 22 ar
|
| 90 |
+
25 22 23 ar
|
| 91 |
+
26 23 24 ar
|
| 92 |
+
27 24 25 ar
|
| 93 |
+
28 24 26 1
|
| 94 |
+
29 26 27 ar
|
| 95 |
+
30 26 31 ar
|
| 96 |
+
31 27 28 ar
|
| 97 |
+
32 28 29 ar
|
| 98 |
+
33 29 30 ar
|
| 99 |
+
34 30 31 ar
|
| 100 |
+
35 4 32 1
|
| 101 |
+
36 4 33 1
|
| 102 |
+
37 5 34 1
|
| 103 |
+
38 5 35 1
|
| 104 |
+
39 5 36 1
|
| 105 |
+
40 7 37 1
|
| 106 |
+
41 8 38 1
|
| 107 |
+
42 11 39 1
|
| 108 |
+
43 11 40 1
|
| 109 |
+
44 11 41 1
|
| 110 |
+
45 13 42 1
|
| 111 |
+
46 14 43 1
|
| 112 |
+
47 17 44 1
|
| 113 |
+
48 21 45 1
|
| 114 |
+
49 22 46 1
|
| 115 |
+
50 23 47 1
|
| 116 |
+
51 25 48 1
|
| 117 |
+
52 27 49 1
|
| 118 |
+
53 28 50 1
|
| 119 |
+
54 29 51 1
|
| 120 |
+
55 30 52 1
|
| 121 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 122 |
+
1 AAZ 1
|
| 123 |
+
|
1y6a/1y6a_ligand.sdf
ADDED
|
@@ -0,0 +1,113 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1y6a_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
52 55 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-0.2730 29.6670 22.7710 O 0 0 0 0 0
|
| 6 |
+
-0.4270 29.9540 21.3770 S 0 0 0 0 0
|
| 7 |
+
0.0570 31.2530 21.0240 O 0 0 0 0 0
|
| 8 |
+
-2.0600 29.9360 21.0470 C 0 0 0 0 0
|
| 9 |
+
-2.3170 29.7940 19.5600 C 0 0 0 0 0
|
| 10 |
+
0.3640 28.7510 20.6130 C 0 0 0 0 0
|
| 11 |
+
0.0070 27.4350 20.9020 C 0 0 0 0 0
|
| 12 |
+
0.6640 26.3600 20.2920 C 0 0 0 0 0
|
| 13 |
+
1.6950 26.5740 19.3650 C 0 0 0 0 0
|
| 14 |
+
2.3450 25.5330 18.7420 O 0 0 0 0 0
|
| 15 |
+
2.1930 24.1360 19.0580 C 0 0 0 0 0
|
| 16 |
+
2.0920 27.8870 19.0640 C 0 0 0 0 0
|
| 17 |
+
1.4050 28.9620 19.6890 C 0 0 0 0 0
|
| 18 |
+
3.0060 28.0930 18.0510 N 0 0 0 0 0
|
| 19 |
+
2.9010 29.1020 17.1830 C 0 0 0 0 0
|
| 20 |
+
3.7780 29.4660 16.2370 N 0 0 0 0 0
|
| 21 |
+
3.3460 30.5380 15.6730 C 0 0 0 0 0
|
| 22 |
+
2.1770 30.9240 16.2160 C 0 0 0 0 0
|
| 23 |
+
1.7930 30.0030 17.2280 O 0 0 0 0 0
|
| 24 |
+
1.2200 32.0310 15.9260 C 0 0 0 0 0
|
| 25 |
+
1.3680 32.9450 14.8930 C 0 0 0 0 0
|
| 26 |
+
0.3690 33.9030 14.7000 C 0 0 0 0 0
|
| 27 |
+
-0.7820 33.9220 15.5170 C 0 0 0 0 0
|
| 28 |
+
-0.9380 32.9730 16.5340 C 0 0 0 0 0
|
| 29 |
+
0.0620 32.0450 16.7200 C 0 0 0 0 0
|
| 30 |
+
-2.1340 32.9830 17.4360 C 0 0 0 0 0
|
| 31 |
+
-3.3510 32.3840 17.0640 C 0 0 0 0 0
|
| 32 |
+
-4.4450 32.4480 17.9270 C 0 0 0 0 0
|
| 33 |
+
-4.3030 33.0910 19.1590 C 0 0 0 0 0
|
| 34 |
+
-3.0840 33.6790 19.5030 C 0 0 0 0 0
|
| 35 |
+
-2.0350 33.6120 18.6520 N 0 0 0 0 0
|
| 36 |
+
-2.4941 30.8763 21.3869 H 0 0 0 0 0
|
| 37 |
+
-2.5094 29.0861 21.5605 H 0 0 0 0 0
|
| 38 |
+
-1.8642 30.6335 19.0325 H 0 0 0 0 0
|
| 39 |
+
-1.8794 28.8612 19.2044 H 0 0 0 0 0
|
| 40 |
+
-3.3916 29.7855 19.3775 H 0 0 0 0 0
|
| 41 |
+
-0.7955 27.2401 21.6134 H 0 0 0 0 0
|
| 42 |
+
0.3699 25.3404 20.5412 H 0 0 0 0 0
|
| 43 |
+
2.4804 23.9662 20.0956 H 0 0 0 0 0
|
| 44 |
+
1.1527 23.8436 18.9152 H 0 0 0 0 0
|
| 45 |
+
2.8313 23.5447 18.4014 H 0 0 0 0 0
|
| 46 |
+
1.6935 29.9844 19.4450 H 0 0 0 0 0
|
| 47 |
+
3.7923 27.4495 17.9619 H 0 0 0 0 0
|
| 48 |
+
3.8570 31.0622 14.8655 H 0 0 0 0 0
|
| 49 |
+
2.2446 32.9166 14.2458 H 0 0 0 0 0
|
| 50 |
+
0.4799 34.6446 13.9089 H 0 0 0 0 0
|
| 51 |
+
-1.5510 34.6774 15.3555 H 0 0 0 0 0
|
| 52 |
+
-0.0486 31.2990 17.5070 H 0 0 0 0 0
|
| 53 |
+
-3.4389 31.8721 16.1057 H 0 0 0 0 0
|
| 54 |
+
-5.3984 32.0020 17.6437 H 0 0 0 0 0
|
| 55 |
+
-5.1435 33.1337 19.8517 H 0 0 0 0 0
|
| 56 |
+
-2.9778 34.1926 20.4585 H 0 0 0 0 0
|
| 57 |
+
1 2 2 0 0 0
|
| 58 |
+
2 3 2 0 0 0
|
| 59 |
+
2 4 1 0 0 0
|
| 60 |
+
2 6 1 0 0 0
|
| 61 |
+
4 5 1 0 0 0
|
| 62 |
+
6 7 4 0 0 0
|
| 63 |
+
6 13 4 0 0 0
|
| 64 |
+
7 8 4 0 0 0
|
| 65 |
+
8 9 4 0 0 0
|
| 66 |
+
9 10 1 0 0 0
|
| 67 |
+
9 12 4 0 0 0
|
| 68 |
+
10 11 1 0 0 0
|
| 69 |
+
12 13 4 0 0 0
|
| 70 |
+
12 14 1 0 0 0
|
| 71 |
+
14 15 1 0 0 0
|
| 72 |
+
15 16 4 0 0 0
|
| 73 |
+
15 19 4 0 0 0
|
| 74 |
+
16 17 4 0 0 0
|
| 75 |
+
17 18 4 0 0 0
|
| 76 |
+
18 19 4 0 0 0
|
| 77 |
+
18 20 1 0 0 0
|
| 78 |
+
20 21 4 0 0 0
|
| 79 |
+
20 25 4 0 0 0
|
| 80 |
+
21 22 4 0 0 0
|
| 81 |
+
22 23 4 0 0 0
|
| 82 |
+
23 24 4 0 0 0
|
| 83 |
+
24 25 4 0 0 0
|
| 84 |
+
24 26 1 0 0 0
|
| 85 |
+
26 27 4 0 0 0
|
| 86 |
+
26 31 4 0 0 0
|
| 87 |
+
27 28 4 0 0 0
|
| 88 |
+
28 29 4 0 0 0
|
| 89 |
+
29 30 4 0 0 0
|
| 90 |
+
30 31 4 0 0 0
|
| 91 |
+
4 32 1 0 0 0
|
| 92 |
+
4 33 1 0 0 0
|
| 93 |
+
5 34 1 0 0 0
|
| 94 |
+
5 35 1 0 0 0
|
| 95 |
+
5 36 1 0 0 0
|
| 96 |
+
7 37 1 0 0 0
|
| 97 |
+
8 38 1 0 0 0
|
| 98 |
+
11 39 1 0 0 0
|
| 99 |
+
11 40 1 0 0 0
|
| 100 |
+
11 41 1 0 0 0
|
| 101 |
+
13 42 1 0 0 0
|
| 102 |
+
14 43 1 0 0 0
|
| 103 |
+
17 44 1 0 0 0
|
| 104 |
+
21 45 1 0 0 0
|
| 105 |
+
22 46 1 0 0 0
|
| 106 |
+
23 47 1 0 0 0
|
| 107 |
+
25 48 1 0 0 0
|
| 108 |
+
27 49 1 0 0 0
|
| 109 |
+
28 50 1 0 0 0
|
| 110 |
+
29 51 1 0 0 0
|
| 111 |
+
30 52 1 0 0 0
|
| 112 |
+
M END
|
| 113 |
+
$$$$
|
1y6a/1y6a_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1y6a/1y6a_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ymx/1ymx_ligand.mol2
ADDED
|
@@ -0,0 +1,99 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:52 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
1ymx_ligand
|
| 7 |
+
41 42 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C4 -8.7680 55.5470 37.6260 C.2 1 CFX 0.1804
|
| 14 |
+
2 O5 -8.4310 56.2250 36.6850 O.2 1 CFX -0.3088
|
| 15 |
+
3 N1 -8.1880 53.2340 36.5780 N.pl3 1 CFX -0.3292
|
| 16 |
+
4 C2 -9.4210 53.1610 37.3380 C.3 1 CFX 0.1331
|
| 17 |
+
5 S8 -10.5520 51.9220 36.6180 S.3 1 CFX -0.1205
|
| 18 |
+
6 C9 -9.3570 50.5340 36.4610 C.3 1 CFX 0.0195
|
| 19 |
+
7 C10 -8.0640 50.8610 36.0050 C.2 1 CFX -0.0450
|
| 20 |
+
8 C11 -7.5200 52.1520 36.0850 C.2 1 CFX 0.0463
|
| 21 |
+
9 C15 -7.3590 49.6600 35.4700 C.3 1 CFX -0.0403
|
| 22 |
+
10 C12 -6.1120 52.5590 35.7360 C.2 1 CFX 0.0568
|
| 23 |
+
11 O13 -5.3620 52.5550 36.7260 O.co2 1 CFX -0.5692
|
| 24 |
+
12 O14 -5.9670 52.8830 34.5290 O.co2 1 CFX -0.5692
|
| 25 |
+
13 C3 -10.0080 54.6040 37.3970 C.3 1 CFX 0.2481
|
| 26 |
+
14 O16 -10.8840 54.6420 38.5550 O.3 1 CFX -0.3528
|
| 27 |
+
15 C17 -11.3920 55.9210 38.9500 C.3 1 CFX 0.0374
|
| 28 |
+
16 N18 -10.6720 54.9890 36.1330 N.am 1 CFX -0.2522
|
| 29 |
+
17 C19 -11.9870 54.7640 35.8290 C.2 1 CFX 0.1903
|
| 30 |
+
18 O21 -12.7650 54.1960 36.6150 O.2 1 CFX -0.3938
|
| 31 |
+
19 C20 -12.4790 55.2350 34.4370 C.3 1 CFX 0.0816
|
| 32 |
+
20 C23 -13.6150 56.2830 34.5180 C.2 1 CFX 0.0307
|
| 33 |
+
21 S24 -14.5880 56.4960 35.9390 S.3 1 CFX -0.0419
|
| 34 |
+
22 C25 -15.5060 57.7320 35.2280 C.2 1 CFX -0.0189
|
| 35 |
+
23 C26 -15.1120 57.9940 33.9620 C.2 1 CFX -0.0924
|
| 36 |
+
24 C27 -14.0220 57.1720 33.5220 C.2 1 CFX -0.0791
|
| 37 |
+
25 H1 -8.2435 55.5857 38.5796 H 1 CFX 0.1393
|
| 38 |
+
26 H2 -7.7896 54.1667 36.3983 H 1 CFX 0.1646
|
| 39 |
+
27 H3 -9.1894 52.8412 38.3647 H 1 CFX 0.0688
|
| 40 |
+
28 H4 -9.7840 49.8043 35.7573 H 1 CFX 0.0511
|
| 41 |
+
29 H5 -9.2532 50.0696 37.4527 H 1 CFX 0.0511
|
| 42 |
+
30 H6 -6.3556 49.9480 35.1233 H 1 CFX 0.0364
|
| 43 |
+
31 H7 -7.9319 49.2429 34.6287 H 1 CFX 0.0364
|
| 44 |
+
32 H8 -7.2695 48.9035 36.2635 H 1 CFX 0.0364
|
| 45 |
+
33 H9 -12.0362 55.8026 39.8337 H 1 CFX 0.0522
|
| 46 |
+
34 H10 -11.9771 56.3539 38.1252 H 1 CFX 0.0522
|
| 47 |
+
35 H11 -10.5531 56.5891 39.1946 H 1 CFX 0.0522
|
| 48 |
+
36 H12 -10.1143 55.4517 35.4439 H 1 CFX 0.1859
|
| 49 |
+
37 H13 -12.8485 54.3603 33.8817 H 1 CFX 0.0685
|
| 50 |
+
38 H14 -11.6299 55.6800 33.8975 H 1 CFX 0.0685
|
| 51 |
+
39 H15 -16.3180 58.2536 35.7325 H 1 CFX 0.0603
|
| 52 |
+
40 H16 -15.5768 58.7550 33.3369 H 1 CFX 0.0373
|
| 53 |
+
41 H17 -13.5685 57.2339 32.5339 H 1 CFX 0.0284
|
| 54 |
+
@<TRIPOS>BOND
|
| 55 |
+
1 1 2 2
|
| 56 |
+
2 13 1 1
|
| 57 |
+
3 4 3 1
|
| 58 |
+
4 3 8 1
|
| 59 |
+
5 4 5 1
|
| 60 |
+
6 4 13 1
|
| 61 |
+
7 5 6 1
|
| 62 |
+
8 6 7 1
|
| 63 |
+
9 7 8 2
|
| 64 |
+
10 7 9 1
|
| 65 |
+
11 8 10 1
|
| 66 |
+
12 10 11 ar
|
| 67 |
+
13 10 12 ar
|
| 68 |
+
14 13 14 1
|
| 69 |
+
15 13 16 1
|
| 70 |
+
16 14 15 1
|
| 71 |
+
17 16 17 am
|
| 72 |
+
18 17 18 2
|
| 73 |
+
19 17 19 1
|
| 74 |
+
20 19 20 1
|
| 75 |
+
21 20 21 1
|
| 76 |
+
22 20 24 2
|
| 77 |
+
23 21 22 1
|
| 78 |
+
24 22 23 2
|
| 79 |
+
25 23 24 1
|
| 80 |
+
26 1 25 1
|
| 81 |
+
27 3 26 1
|
| 82 |
+
28 4 27 1
|
| 83 |
+
29 6 28 1
|
| 84 |
+
30 6 29 1
|
| 85 |
+
31 9 30 1
|
| 86 |
+
32 9 31 1
|
| 87 |
+
33 9 32 1
|
| 88 |
+
34 15 33 1
|
| 89 |
+
35 15 34 1
|
| 90 |
+
36 15 35 1
|
| 91 |
+
37 16 36 1
|
| 92 |
+
38 19 37 1
|
| 93 |
+
39 19 38 1
|
| 94 |
+
40 22 39 1
|
| 95 |
+
41 23 40 1
|
| 96 |
+
42 24 41 1
|
| 97 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 98 |
+
1 CFX 1
|
| 99 |
+
|
1ymx/1ymx_ligand.sdf
ADDED
|
@@ -0,0 +1,91 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
1ymx_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
42 43 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
-8.7680 55.5470 37.6260 C 0 0 0 0 0
|
| 6 |
+
-8.4310 56.2250 36.6850 O 0 0 0 0 0
|
| 7 |
+
-8.1880 53.2340 36.5780 N 0 0 0 0 0
|
| 8 |
+
-9.4210 53.1610 37.3380 C 0 0 0 0 0
|
| 9 |
+
-10.5520 51.9220 36.6180 S 0 0 0 0 0
|
| 10 |
+
-9.3570 50.5340 36.4610 C 0 0 0 0 0
|
| 11 |
+
-8.0640 50.8610 36.0050 C 0 0 0 0 0
|
| 12 |
+
-7.5200 52.1520 36.0850 C 0 0 0 0 0
|
| 13 |
+
-7.3590 49.6600 35.4700 C 0 0 0 0 0
|
| 14 |
+
-6.1120 52.5590 35.7360 C 0 0 0 0 0
|
| 15 |
+
-5.3620 52.5550 36.7260 O 0 0 0 0 0
|
| 16 |
+
-5.9670 52.8830 34.5290 O 0 0 0 0 0
|
| 17 |
+
-10.0080 54.6040 37.3970 C 0 0 0 0 0
|
| 18 |
+
-10.8840 54.6420 38.5550 O 0 0 0 0 0
|
| 19 |
+
-11.3920 55.9210 38.9500 C 0 0 0 0 0
|
| 20 |
+
-10.6720 54.9890 36.1330 N 0 0 0 0 0
|
| 21 |
+
-11.9870 54.7640 35.8290 C 0 0 0 0 0
|
| 22 |
+
-12.7650 54.1960 36.6150 O 0 0 0 0 0
|
| 23 |
+
-12.4790 55.2350 34.4370 C 0 0 0 0 0
|
| 24 |
+
-13.6150 56.2830 34.5180 C 0 0 0 0 0
|
| 25 |
+
-14.5880 56.4960 35.9390 S 0 0 0 0 0
|
| 26 |
+
-15.5060 57.7320 35.2280 C 0 0 0 0 0
|
| 27 |
+
-15.1120 57.9940 33.9620 C 0 0 0 0 0
|
| 28 |
+
-14.0220 57.1720 33.5220 C 0 0 0 0 0
|
| 29 |
+
-8.2431 55.5857 38.5805 H 0 0 0 0 0
|
| 30 |
+
-7.7935 54.1576 36.4000 H 0 0 0 0 0
|
| 31 |
+
-9.2520 52.8166 38.3583 H 0 0 0 0 0
|
| 32 |
+
-9.7768 49.8591 35.7151 H 0 0 0 0 0
|
| 33 |
+
-9.2285 50.1330 37.4664 H 0 0 0 0 0
|
| 34 |
+
-7.0816 49.8361 34.4307 H 0 0 0 0 0
|
| 35 |
+
-6.4618 49.4739 36.0604 H 0 0 0 0 0
|
| 36 |
+
-8.0203 48.7956 35.5294 H 0 0 0 0 0
|
| 37 |
+
-6.7928 52.7432 34.0599 H 0 0 0 0 0
|
| 38 |
+
-10.5598 56.5821 39.1921 H 0 0 0 0 0
|
| 39 |
+
-11.9714 56.3488 38.1319 H 0 0 0 0 0
|
| 40 |
+
-12.0301 55.8024 39.8257 H 0 0 0 0 0
|
| 41 |
+
-10.1031 55.4610 35.4302 H 0 0 0 0 0
|
| 42 |
+
-12.8688 54.3636 33.9109 H 0 0 0 0 0
|
| 43 |
+
-11.6352 55.6996 33.9269 H 0 0 0 0 0
|
| 44 |
+
-16.3187 58.2541 35.7330 H 0 0 0 0 0
|
| 45 |
+
-15.5772 58.7557 33.3363 H 0 0 0 0 0
|
| 46 |
+
-13.5681 57.2339 32.5330 H 0 0 0 0 0
|
| 47 |
+
1 2 2 0 0 0
|
| 48 |
+
13 1 1 0 0 0
|
| 49 |
+
4 3 1 0 0 0
|
| 50 |
+
3 8 1 0 0 0
|
| 51 |
+
4 5 1 0 0 0
|
| 52 |
+
4 13 1 0 0 0
|
| 53 |
+
5 6 1 0 0 0
|
| 54 |
+
6 7 1 0 0 0
|
| 55 |
+
7 8 2 0 0 0
|
| 56 |
+
7 9 1 0 0 0
|
| 57 |
+
8 10 1 0 0 0
|
| 58 |
+
10 11 2 0 0 0
|
| 59 |
+
10 12 1 0 0 0
|
| 60 |
+
13 14 1 0 0 0
|
| 61 |
+
13 16 1 0 0 0
|
| 62 |
+
14 15 1 0 0 0
|
| 63 |
+
16 17 1 0 0 0
|
| 64 |
+
17 18 2 0 0 0
|
| 65 |
+
17 19 1 0 0 0
|
| 66 |
+
19 20 1 0 0 0
|
| 67 |
+
20 21 4 0 0 0
|
| 68 |
+
20 24 4 0 0 0
|
| 69 |
+
21 22 4 0 0 0
|
| 70 |
+
22 23 4 0 0 0
|
| 71 |
+
23 24 4 0 0 0
|
| 72 |
+
1 25 1 0 0 0
|
| 73 |
+
3 26 1 0 0 0
|
| 74 |
+
4 27 1 0 0 0
|
| 75 |
+
6 28 1 0 0 0
|
| 76 |
+
6 29 1 0 0 0
|
| 77 |
+
9 30 1 0 0 0
|
| 78 |
+
9 31 1 0 0 0
|
| 79 |
+
9 32 1 0 0 0
|
| 80 |
+
12 33 1 0 0 0
|
| 81 |
+
15 34 1 0 0 0
|
| 82 |
+
15 35 1 0 0 0
|
| 83 |
+
15 36 1 0 0 0
|
| 84 |
+
16 37 1 0 0 0
|
| 85 |
+
19 38 1 0 0 0
|
| 86 |
+
19 39 1 0 0 0
|
| 87 |
+
22 40 1 0 0 0
|
| 88 |
+
23 41 1 0 0 0
|
| 89 |
+
24 42 1 0 0 0
|
| 90 |
+
M END
|
| 91 |
+
$$$$
|
1ymx/1ymx_protein_esmfold_aligned_tr_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
1ymx/1ymx_protein_processed_fix.pdb
ADDED
|
The diff for this file is too large to render.
See raw diff
|
|
|
2ay2/2ay2_ligand.mol2
ADDED
|
@@ -0,0 +1,68 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 1 |
+
###
|
| 2 |
+
### Created by X-TOOL on Mon Sep 10 21:12:46 2018
|
| 3 |
+
###
|
| 4 |
+
|
| 5 |
+
@<TRIPOS>MOLECULE
|
| 6 |
+
2ay2_ligand
|
| 7 |
+
26 26 1 0 0
|
| 8 |
+
SMALL
|
| 9 |
+
GAST_HUCK
|
| 10 |
+
|
| 11 |
+
|
| 12 |
+
@<TRIPOS>ATOM
|
| 13 |
+
1 C1 101.0710 44.8070 11.6360 C.3 1 CXP -0.0395
|
| 14 |
+
2 C2 99.9520 45.4070 12.4900 C.3 1 CXP -0.0501
|
| 15 |
+
3 C3 99.1340 44.3550 13.2350 C.3 1 CXP -0.0528
|
| 16 |
+
4 C4 98.5830 43.3040 12.2700 C.3 1 CXP -0.0530
|
| 17 |
+
5 C5 99.7010 42.6700 11.4360 C.3 1 CXP -0.0528
|
| 18 |
+
6 C6 100.4930 43.7440 10.7020 C.3 1 CXP -0.0501
|
| 19 |
+
7 C7 101.9090 45.8550 10.8950 C.3 1 CXP -0.0386
|
| 20 |
+
8 C8 103.1460 46.3530 11.6580 C.3 1 CXP 0.0004
|
| 21 |
+
9 C9 102.8110 47.1200 12.9290 C.2 1 CXP 0.0348
|
| 22 |
+
10 O1 102.1190 48.1570 12.8460 O.co2 1 CXP -0.5690
|
| 23 |
+
11 O2 103.2200 46.6910 14.0230 O.co2 1 CXP -0.5690
|
| 24 |
+
12 H1 101.7579 44.2930 12.3244 H 1 CXP 0.0302
|
| 25 |
+
13 H2 99.2764 45.9741 11.8328 H 1 CXP 0.0268
|
| 26 |
+
14 H3 100.4020 46.0872 13.2282 H 1 CXP 0.0268
|
| 27 |
+
15 H4 98.2946 44.8483 13.7470 H 1 CXP 0.0265
|
| 28 |
+
16 H5 99.7765 43.8595 13.9778 H 1 CXP 0.0265
|
| 29 |
+
17 H6 97.8599 43.7832 11.5937 H 1 CXP 0.0265
|
| 30 |
+
18 H7 98.0778 42.5167 12.8487 H 1 CXP 0.0265
|
| 31 |
+
19 H8 99.2586 41.9810 10.7015 H 1 CXP 0.0265
|
| 32 |
+
20 H9 100.3771 42.1125 12.1009 H 1 CXP 0.0265
|
| 33 |
+
21 H10 101.3228 43.2613 10.1650 H 1 CXP 0.0268
|
| 34 |
+
22 H11 99.8266 44.2379 9.9795 H 1 CXP 0.0268
|
| 35 |
+
23 H12 101.2649 46.7218 10.6860 H 1 CXP 0.0286
|
| 36 |
+
24 H13 102.2480 45.4129 9.9465 H 1 CXP 0.0286
|
| 37 |
+
25 H14 103.7208 47.0151 10.9938 H 1 CXP 0.0430
|
| 38 |
+
26 H15 103.7609 45.4822 11.9294 H 1 CXP 0.0430
|
| 39 |
+
@<TRIPOS>BOND
|
| 40 |
+
1 1 2 1
|
| 41 |
+
2 1 6 1
|
| 42 |
+
3 1 7 1
|
| 43 |
+
4 2 3 1
|
| 44 |
+
5 3 4 1
|
| 45 |
+
6 4 5 1
|
| 46 |
+
7 5 6 1
|
| 47 |
+
8 7 8 1
|
| 48 |
+
9 8 9 1
|
| 49 |
+
10 9 10 ar
|
| 50 |
+
11 9 11 ar
|
| 51 |
+
12 1 12 1
|
| 52 |
+
13 2 13 1
|
| 53 |
+
14 2 14 1
|
| 54 |
+
15 3 15 1
|
| 55 |
+
16 3 16 1
|
| 56 |
+
17 4 17 1
|
| 57 |
+
18 4 18 1
|
| 58 |
+
19 5 19 1
|
| 59 |
+
20 5 20 1
|
| 60 |
+
21 6 21 1
|
| 61 |
+
22 6 22 1
|
| 62 |
+
23 7 23 1
|
| 63 |
+
24 7 24 1
|
| 64 |
+
25 8 25 1
|
| 65 |
+
26 8 26 1
|
| 66 |
+
@<TRIPOS>SUBSTRUCTURE
|
| 67 |
+
1 CXP 1
|
| 68 |
+
|
2ay2/2ay2_ligand.sdf
ADDED
|
@@ -0,0 +1,60 @@
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
| 1 |
+
2ay2_ligand
|
| 2 |
+
-I-interpret-
|
| 3 |
+
|
| 4 |
+
27 27 0 0 0 0 0 0 0 0999 V2000
|
| 5 |
+
101.0710 44.8070 11.6360 C 0 0 0 0 0
|
| 6 |
+
99.9520 45.4070 12.4900 C 0 0 0 0 0
|
| 7 |
+
99.1340 44.3550 13.2350 C 0 0 0 0 0
|
| 8 |
+
98.5830 43.3040 12.2700 C 0 0 0 0 0
|
| 9 |
+
99.7010 42.6700 11.4360 C 0 0 0 0 0
|
| 10 |
+
100.4930 43.7440 10.7020 C 0 0 0 0 0
|
| 11 |
+
101.9090 45.8550 10.8950 C 0 0 0 0 0
|
| 12 |
+
103.1460 46.3530 11.6580 C 0 0 0 0 0
|
| 13 |
+
102.8110 47.1200 12.9290 C 0 0 0 0 0
|
| 14 |
+
102.1190 48.1570 12.8460 O 0 0 0 0 0
|
| 15 |
+
103.2200 46.6910 14.0230 O 0 0 0 0 0
|
| 16 |
+
101.7797 44.3280 12.3115 H 0 0 0 0 0
|
| 17 |
+
99.2753 45.9390 11.8213 H 0 0 0 0 0
|
| 18 |
+
100.4156 46.0535 13.2351 H 0 0 0 0 0
|
| 19 |
+
98.2972 44.8485 13.7294 H 0 0 0 0 0
|
| 20 |
+
99.7794 43.8594 13.9602 H 0 0 0 0 0
|
| 21 |
+
97.8797 43.7899 11.5937 H 0 0 0 0 0
|
| 22 |
+
98.0982 42.5201 12.8519 H 0 0 0 0 0
|
| 23 |
+
99.2576 41.9946 10.7043 H 0 0 0 0 0
|
| 24 |
+
100.3729 42.1257 12.0996 H 0 0 0 0 0
|
| 25 |
+
101.3279 43.2548 10.2003 H 0 0 0 0 0
|
| 26 |
+
99.8127 44.2438 10.0124 H 0 0 0 0 0
|
| 27 |
+
101.2652 46.7206 10.7392 H 0 0 0 0 0
|
| 28 |
+
102.2711 45.3813 9.9825 H 0 0 0 0 0
|
| 29 |
+
103.6845 47.0335 10.9983 H 0 0 0 0 0
|
| 30 |
+
103.7251 45.4765 11.9486 H 0 0 0 0 0
|
| 31 |
+
101.9029 48.3233 11.9255 H 0 0 0 0 0
|
| 32 |
+
1 2 1 0 0 0
|
| 33 |
+
1 6 1 0 0 0
|
| 34 |
+
1 7 1 0 0 0
|
| 35 |
+
2 3 1 0 0 0
|
| 36 |
+
3 4 1 0 0 0
|
| 37 |
+
4 5 1 0 0 0
|
| 38 |
+
5 6 1 0 0 0
|
| 39 |
+
7 8 1 0 0 0
|
| 40 |
+
8 9 1 0 0 0
|
| 41 |
+
9 10 1 0 0 0
|
| 42 |
+
9 11 2 0 0 0
|
| 43 |
+
1 12 1 0 0 0
|
| 44 |
+
2 13 1 0 0 0
|
| 45 |
+
2 14 1 0 0 0
|
| 46 |
+
3 15 1 0 0 0
|
| 47 |
+
3 16 1 0 0 0
|
| 48 |
+
4 17 1 0 0 0
|
| 49 |
+
4 18 1 0 0 0
|
| 50 |
+
5 19 1 0 0 0
|
| 51 |
+
5 20 1 0 0 0
|
| 52 |
+
6 21 1 0 0 0
|
| 53 |
+
6 22 1 0 0 0
|
| 54 |
+
7 23 1 0 0 0
|
| 55 |
+
7 24 1 0 0 0
|
| 56 |
+
8 25 1 0 0 0
|
| 57 |
+
8 26 1 0 0 0
|
| 58 |
+
10 27 1 0 0 0
|
| 59 |
+
M END
|
| 60 |
+
$$$$
|