Add files using upload-large-folder tool

.gitattributes

@@ -57,3 +57,5 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 # Video files - compressed
 *.mp4 filter=lfs diff=lfs merge=lfs -text
 *.webm filter=lfs diff=lfs merge=lfs -text
+sub-CC00131XX08/sub-CC00131XX08_qc.pdf filter=lfs diff=lfs merge=lfs -text
+sub-CC00257XX10/sub-CC00257XX10_qc.pdf filter=lfs diff=lfs merge=lfs -text

dataset_description.json

@@ -0,0 +1,11 @@
+{
+    "Name": "dHCP neonatal Structural Derivatives Release 2.0",
+    "License": "http://www.developingconnectome.org/open-access-dhcp-data-terms-of-use-version-4-0_2019-05-23/",
+    "Authors": [
+        "dHCP Consortium"
+    ],
+    "HowToAcknowledge": "http://www.developingconnectome.org/how-to-cite/",
+    "PipelineDescription.Name": "dHCP neonatal structural pipeline",
+    "PipelineDescription.Version": "v1.2.0",
+    "PipelineDescription.CodeURL": "https://github.com/DevelopingHCP/structural-pipeline"
+}

desc-drawem87_dseg.tsv

@@ -0,0 +1,51 @@
+index	name
+1	L_Hippocampus 
+2	R_Hippocampus 
+3	L_Amygdala 
+4	R_Amygdala 
+5	L_Anterior_temporal_lobe_medial 
+6	R_Anterior_temporal_lobe_medial 
+7	L_Anterior_temporal_lobe_lateral 
+8	R_Anterior_temporal_lobe_lateral 
+9	L_Gyri_parahippocampalis_et_ambiens_anterior 
+10	R_Gyri_parahippocampalis_et_ambiens_anterior 
+11	L_Superior_temporal_gyrus_middle 
+12	R_Superior_temporal_gyrus_middle 
+13	L_Medial_and_inferior_temporal_gyri_anterior 
+14	R_Medial_and_inferior_temporal_gyri_anterior 
+15	L_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_anterior 
+16	R_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_anterior 
+17	L_Cerebellum 
+18	R_Cerebellum 
+19	Brainstem_spans_the_midline 
+20	R_Insula 
+21	L_Insula 
+22	R_Occipital_lobe 
+23	L_Occipital_lobe 
+24	R_Gyri_parahippocampalis_et_ambiens_posterior 
+25	L_Gyri_parahippocampalis_et_ambiens_posterior 
+26	R_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_posterior 
+27	L_Lateral_occipitotemporal_gyrus_gyrus_fusiformis_posterior 
+28	R_Medial_and_inferior_temporal_gyri_posterior 
+29	L_Medial_and_inferior_temporal_gyri_posterior 
+30	R_Superior_temporal_gyrus_posterior 
+31	L_Superior_temporal_gyrus_posterior 
+32	R_Cingulate_gyrus_anterior 
+33	L_Cingulate_gyrus_anterior 
+34	R_Cingulate_gyrus_posterior 
+35	L_Cingulate_gyrus_posterior 
+36	R_Frontal_lobe 
+37	L_Frontal_lobe 
+38	R_Parietal_lobe 
+39	L_Parietal_lobe 
+40	R_Caudate_nucleus 
+41	L_Caudate_nucleus 
+42	R_Thalamus 
+43	L_Thalamus 
+44	R_Subthalamic_nucleus 
+45	L_Subthalamic_nucleus 
+46	R_Lentiform_Nucleus 
+47	L_Lentiform_Nucleus 
+48	Corpus_Callosum 
+49	L_Lateral_Ventricle 
+50	R_Lateral_Ventricle 

desc-drawem9_dseg.tsv

@@ -0,0 +1,10 @@
+index	name
+1	"Cerebrospinal Fluid"
+2	"Cortical Grey Matter"
+3	"White Matter"
+4	Background
+5	Ventricle
+6	Cerebellum
+7	"Deep Grey Matter"
+8	Brainstem
+9	Hippocampus

desc-restore_T2w.json

@@ -0,0 +1,21 @@
+{
+	"Manufacturer": "Philips Medical Systems",
+	"ManufacturersModelName": "Achieva",
+	"SoftwareVersions": "3.2.2\\3.2.2.0",
+	"MagneticFieldStrength": 3,
+	"ReceiveCoilName": "Dual coil",
+	"CoilCombinationMethod": "SENSE",
+	"PulseSequenceType": "TSE TSE MS Cartesian",
+	"SequenceName": "TSE",
+	"PulseSequenceDetails": "FastImgMode: TSE \/ ScanMode: MS \/ AcqMode: Cartesian",
+	"NonlinearGradientCorrection": 0,
+	"ParallelAcquisitionTechnique": "SENSE",
+	"EchoTime": 0.156,
+	"FlipAngle": 90,
+	"RepetitionTime": 12,
+	"AcqVoxelSize": [0.8,0.8,0.8],
+	"RecVoxelSize": [0.5,0.5,0.5],
+	"Description": "T2 weighted, bias corrected image",
+	"SkullStripped": false,
+	"Space": "T2" 
+}

desc-restore_space-T2w_T1w.json

@@ -0,0 +1,21 @@
+{
+	"Manufacturer": "Philips Medical Systems",
+	"ManufacturersModelName": "Achieva",
+	"SoftwareVersions": "3.2.2\\3.2.2.0",
+	"MagneticFieldStrength": 3,
+	"ReceiveCoilName": "Dual coil",
+	"CoilCombinationMethod": "SENSE",
+	"PulseSequenceType": "TSE TSE MS Cartesian",
+	"SequenceName": "TSE",
+	"PulseSequenceDetails": "FastImgMode: TSE \/ ScanMode: MS \/ AcqMode: Cartesian",
+	"NonlinearGradientCorrection": 0,
+	"ParallelAcquisitionTechnique": "SENSE",
+	"EchoTime": 0.156,
+	"FlipAngle": 90,
+	"RepetitionTime": 12,
+	"AcqVoxelSize": [0.8,0.8,0.8],
+	"RecVoxelSize": [0.5,0.5,0.5],
+	"Description": "T1 weighted, bias corrected image (in T2 space)",
+	"SkullStripped": false,
+	"Space": "T2" 
+}

from-T2w_mode-image.json

@@ -0,0 +1,9 @@
+{
+    "Description": "Warp from structural space to the subject’s age respective template space",
+    "Type": "displacementfield",
+    "Multiplexed": false,
+    "Invertible": true,
+    "FromFile": "",
+    "ToFile": "",
+    "CommandLine": ""
+}

participants.tsv

@@ -0,0 +1,506 @@
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space-T2w_T1w.json

@@ -0,0 +1,21 @@
+{
+	"Manufacturer": "Philips Medical Systems",
+	"ManufacturersModelName": "Achieva",
+	"SoftwareVersions": "3.2.2\\3.2.2.0",
+	"MagneticFieldStrength": 3,
+	"ReceiveCoilName": "Dual coil",
+	"CoilCombinationMethod": "SENSE",
+	"PulseSequenceType": "TSE TSE MS Cartesian",
+	"SequenceName": "TSE",
+	"PulseSequenceDetails": "FastImgMode: TSE \/ ScanMode: MS \/ AcqMode: Cartesian",
+	"NonlinearGradientCorrection": 0,
+	"ParallelAcquisitionTechnique": "SENSE",
+	"EchoTime": 0.156,
+	"FlipAngle": 90,
+	"RepetitionTime": 12,
+	"AcqVoxelSize": [0.8,0.8,0.8],
+	"RecVoxelSize": [0.5,0.5,0.5],
+	"Description": "T1 weighted image (in T2 space)",
+	"SkullStripped": false,
+	"Space": "T2" 
+}

sub-CC00067XX10/sub-CC00067XX10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+20200	40.142857142857	34.0	1	1	0

sub-CC00069XX12/sub-CC00069XX12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+26300	39.571428571429	33.5	1	2	0

sub-CC00070XX05/sub-CC00070XX05_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+26700	37.714285714286	31.5	1	3	0

sub-CC00079XX14/sub-CC00079XX14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+30000	41.571428571429	34.5	1	1	0

sub-CC00094AN13/sub-CC00094AN13_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+33500	38.142857142857146	34.0	1	2	0

sub-CC00103XX04/sub-CC00103XX04_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+35300	40.142857142857	34.5	1	5	0

sub-CC00126XX11/sub-CC00126XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+43100	38.285714285714	33.0	1	1	0

sub-CC00131XX08/sub-CC00131XX08_qc.pdf

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:8cd81913b4f8c51aa75b2fa670105dfc1e1dec350947adfbf48894f967a5c9e2
+size 16183840

sub-CC00131XX08/sub-CC00131XX08_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+44200	39.142857142857	34.0	1	1	0

sub-CC00165XX09/sub-CC00165XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+54600	41.142857142857	35.0	1	1	0

sub-CC00183XX11/sub-CC00183XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+60300	41.142857142857	35.5	1	1	0

sub-CC00192AN12/sub-CC00192AN12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+64301	37.285714285714	32.0	1	3	0

sub-CC00203XX05/sub-CC00203XX05_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+69500	40.857142857143	34.0	1	2	0

sub-CC00209XX11/sub-CC00209XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+70400	42.857142857143	33.0	1	1	0

sub-CC00216AN10/sub-CC00216AN10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+73100	36.857142857143	32.0	1	2	0

sub-CC00257XX10/sub-CC00257XX10_qc.pdf

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:29f3d0edf218cf1820c18f02c6bfc88eba3e16315c59bbe5510db98f283a62cd
+size 18628036

sub-CC00257XX10/sub-CC00257XX10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+84700	38.285714285714	32.0	1	1	0

sub-CC00260XX05/sub-CC00260XX05_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+85300	39.714285714286	34.0	1	2	0

sub-CC00267XX12/sub-CC00267XX12_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+87700	44.142857142857	37.6	1	2	0

sub-CC00284BN13/sub-CC00284BN13_sessions.tsv

@@ -0,0 +1,3 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+90801	32.285714285714	25.5	1	1	0
+111500	41.285714285714	36.6	2	2	0

sub-CC00316XX11/sub-CC00316XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+101300	44.428571428571	37.4	1	2	0

sub-CC00319XX14/sub-CC00319XX14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+117300	41.714285714286	34.0	1	1	0

sub-CC00330XX09/sub-CC00330XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+128200	44.0	37.0	1	1	0

sub-CC00346XX17/sub-CC00346XX17_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+109200	41.571428571429	37.0	1	1	0

sub-CC00350XX04/sub-CC00350XX04_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+109100	38.142857142857	30.1	1	3	0

sub-CC00352XX06/sub-CC00352XX06_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+110700	43.857142857143	37.5	1	2	0

sub-CC00355XX09/sub-CC00355XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+112600	38.857142857143	36.0	1	2	0

sub-CC00357XX11/sub-CC00357XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+113900	41.714285714286	36.5	1	1	0

sub-CC00363XX09/sub-CC00363XX09_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+114900	39.142857142857	33.0	1	1	0

sub-CC00381XX11/sub-CC00381XX11_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+121600	41.714285714286	35.5	1	1	0

sub-CC00383XX13/sub-CC00383XX13_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+121800	41.714285714286	36.3	1	1	0

sub-CC00385XX15/sub-CC00385XX15_sessions.tsv

@@ -0,0 +1,3 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+118500	35.714285714286	33.5	1	1	0
+125700	40.0	38.0	2	1	0

sub-CC00399XX21/sub-CC00399XX21_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+123400	42.857142857143	35.5	1	3	0

sub-CC00407AN11/sub-CC00407AN11_sessions.tsv

@@ -0,0 +1,3 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+124000	35.571428571429	32.0	1	3	0
+137100	42.0	35.8	2	3	0

sub-CC00414XX10/sub-CC00414XX10_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+127300	38.0	35.0	1	5	0

sub-CC00417XX13/sub-CC00417XX13_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+129000	41.285714285714	34.0	1	3	0

sub-CC00428XX16/sub-CC00428XX16_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+130400	40.857142857143	33.5	1	2	0

sub-CC00434AN14/sub-CC00434AN14_sessions.tsv

@@ -0,0 +1,2 @@
+session_id	scan_age	scan_head_circumference	scan_number	radiology_score	sedation
+127700	38.857142857143	33.0	1	3	0