Upload hg38.trf.short.bed.csv

hg38.trf.short.bed.csv : A CSV file with the locations of repeats in the human genome from https://hgdownload.soe.ucsc.edu/goldenPath/hg38/bigZips/. Contains the first 1000 repeats from the hg38.trf.bed.gz file.

hg38.trf.short.bed.csv

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+chromosome,start_position,end_position,computational_method,period_size,copy_number,consensus_size,percent_matches,percent_indels,score,A,C,G,T,entropy_0-2,sequence
+chr1,10000,10468,trf,6,77.2,6,95,3,789,33,51,0,15,1.43,TAACCC
+chr1,30862,30959,trf,2,47.5,2,75,8,79,5,42,1,51,1.31,TC
+chr1,44835,44876,trf,4,10.0,4,94,5,73,73,0,0,26,0.84,AAAT
+chr1,50481,50513,trf,2,16.0,2,100,0,64,0,0,50,50,1.00,GT
+chr1,54712,54817,trf,4,25.8,4,87,7,149,0,26,0,72,0.91,TTTC
+chr1,66159,66629,trf,7,68.1,7,72,18,278,49,0,0,49,1.08,TTATATA
+chr1,66160,66630,trf,2,262.0,2,71,21,339,49,0,0,49,1.08,TA
+chr1,66204,66632,trf,5,87.4,5,73,16,202,50,0,0,48,1.06,ATATA
+chr1,72124,72164,trf,12,3.3,12,89,0,62,50,20,0,30,1.49,ATATATACATAC
+chr1,72128,72163,trf,4,8.8,4,87,0,52,51,22,0,25,1.48,ATAC
+chr1,83791,84041,trf,4,64.8,4,86,11,335,72,0,28,0,0.86,AAAG
+chr1,98999,99042,trf,4,10.8,4,100,0,86,23,0,0,76,0.78,TTTA
+chr1,99046,99116,trf,1,70.0,1,76,0,68,0,11,0,88,0.51,T
+chr1,99047,99115,trf,12,5.9,11,83,16,77,0,11,0,88,0.52,TTTTTTTTTTC
+chr1,104160,104196,trf,2,18.0,2,94,0,63,50,47,0,2,1.15,AC
+chr1,108444,108469,trf,11,2.3,11,100,0,50,28,16,32,24,1.96,GAGGATCACTT
+chr1,109564,109614,trf,2,25.0,2,91,0,82,2,2,48,48,1.24,TG
+chr1,120967,121135,trf,7,23.1,7,77,17,150,41,3,1,53,1.29,TTATATA
+chr1,120968,121135,trf,11,15.3,11,76,13,159,41,3,1,53,1.29,TATATATTATA
+chr1,120968,121135,trf,9,17.6,9,74,21,137,41,3,1,53,1.29,TATATATTA
+chr1,134065,134094,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,144527,144576,trf,2,24.5,2,100,0,98,48,0,0,51,1.00,TA
+chr1,147433,147475,trf,3,14.0,3,89,0,66,71,28,0,0,0.86,CAA
+chr1,158997,159031,trf,2,17.0,2,93,0,59,52,47,0,0,1.00,AC
+chr1,162180,162275,trf,4,23.0,4,72,10,66,51,0,48,0,1.00,AAGG
+chr1,162196,162325,trf,8,16.1,8,76,13,97,45,0,54,0,0.99,AAGGAGGG
+chr1,162287,162344,trf,4,14.2,4,84,0,69,33,0,66,0,0.92,GAGG
+chr1,174902,174933,trf,1,31.0,1,100,0,62,100,0,0,0,0.00,A
+chr1,176202,176231,trf,5,5.8,5,100,0,58,82,17,0,0,0.66,AAAAC
+chr1,180088,180998,trf,6,146.8,6,82,9,899,31,48,1,17,1.58,ACCCTA
+chr1,201376,201479,trf,2,50.5,2,79,7,100,4,42,0,52,1.22,TC
+chr1,271385,271410,trf,5,5.0,5,100,0,50,0,20,0,80,0.72,CTTTT
+chr1,271386,271429,trf,10,4.2,10,83,13,52,0,11,0,88,0.52,TTTTCTTTTT
+chr1,275583,275614,trf,4,7.8,4,100,0,62,22,0,0,77,0.77,TTTA
+chr1,275618,275679,trf,1,61.0,1,73,0,50,0,13,0,86,0.56,T
+chr1,275619,275677,trf,12,4.9,11,80,19,64,0,13,0,86,0.58,TTTTTTTTTTC
+chr1,280726,280760,trf,2,17.0,2,93,0,59,50,47,0,2,1.16,AC
+chr1,285008,285033,trf,11,2.3,11,100,0,50,28,16,32,24,1.96,GAGGATCACTT
+chr1,286134,286178,trf,2,22.0,2,85,0,61,4,2,45,47,1.35,TG
+chr1,297538,297674,trf,2,76.5,2,68,22,90,41,3,1,52,1.28,TA
+chr1,297546,297674,trf,7,17.4,7,75,16,109,42,3,1,53,1.26,TATTATA
+chr1,360788,360816,trf,12,2.3,12,100,0,56,28,25,21,25,1.99,ATCAGCCTGGTA
+chr1,367998,368050,trf,10,4.6,11,77,17,54,44,38,1,15,1.58,TACACACATCA
+chr1,370612,370656,trf,4,9.8,5,88,11,53,0,15,0,84,0.63,TTTTC
+chr1,370612,370656,trf,9,4.4,9,79,20,52,0,15,0,84,0.63,TTTTCTTTT
+chr1,371008,371037,trf,5,5.8,5,100,0,58,0,0,17,82,0.66,TTTTG
+chr1,371274,371314,trf,2,20.0,2,84,0,53,5,2,45,47,1.38,TG
+chr1,373984,374164,trf,12,14.8,12,71,9,105,4,57,0,37,1.23,TCTCCTTTCTCC
+chr1,393781,393807,trf,2,13.0,2,100,0,52,0,0,50,50,1.00,GT
+chr1,394541,394646,trf,4,26.2,4,84,0,75,37,2,60,0,1.12,AGGG
+chr1,396748,396776,trf,1,28.0,1,100,0,56,0,0,0,100,0.00,T
+chr1,396901,396941,trf,2,20.0,2,100,0,80,0,0,50,50,1.00,GT
+chr1,409436,409471,trf,4,8.8,4,87,0,52,22,2,2,71,1.13,TTTA
+chr1,409468,409510,trf,12,3.4,12,81,15,50,0,19,0,80,0.70,TTTTTCCTTCTT
+chr1,414629,414675,trf,2,23.0,2,100,0,92,50,50,0,0,1.00,AC
+chr1,417892,418051,trf,4,39.2,4,85,12,218,72,0,27,0,0.84,AGAA
+chr1,432155,432300,trf,2,73.5,2,74,5,80,47,10,3,38,1.55,AT
+chr1,432159,432302,trf,10,14.1,10,75,11,94,47,11,3,37,1.56,ATATATATAC
+chr1,476980,477150,trf,7,23.1,7,76,18,136,41,3,1,53,1.25,TTATATA
+chr1,490052,490077,trf,1,25.0,1,100,0,50,0,0,0,100,0.00,T
+chr1,503138,503172,trf,2,17.0,2,100,0,68,50,0,0,50,1.00,TA
+chr1,506032,506073,trf,3,13.7,3,84,0,55,73,24,0,2,0.96,AAC
+chr1,517589,517629,trf,2,20.0,2,94,0,71,52,47,0,0,1.00,AC
+chr1,520776,520871,trf,4,23.0,4,72,10,66,51,0,48,0,1.00,AAGG
+chr1,520792,520921,trf,8,16.1,8,76,13,97,45,0,54,0,0.99,AAGGAGGG
+chr1,520883,520940,trf,4,14.2,4,84,0,69,33,0,66,0,0.92,GAGG
+chr1,533492,533520,trf,1,28.0,1,100,0,56,100,0,0,0,0.00,A
+chr1,534789,534818,trf,5,5.8,5,100,0,58,82,17,0,0,0.66,AAAAC
+chr1,597051,597101,trf,10,5.0,10,80,0,64,44,38,2,16,1.59,TACACACTCA
+chr1,599287,599327,trf,5,8.8,5,89,10,52,0,17,0,82,0.67,TTTTC
+chr1,599287,599330,trf,9,4.3,9,78,21,50,0,16,0,83,0.64,TTTTCTTTT
+chr1,599682,599711,trf,5,5.8,5,100,0,58,0,0,17,82,0.66,TTTTG
+chr1,599948,599988,trf,2,20.0,2,84,0,53,5,2,45,47,1.38,TG
+chr1,602209,602359,trf,12,12.5,12,77,2,158,5,60,0,33,1.24,CTCTCCATCCCC
+chr1,623671,623699,trf,2,14.0,2,100,0,56,0,0,50,50,1.00,GT
+chr1,624433,624534,trf,4,25.2,4,83,0,67,37,2,59,0,1.13,AGGG
+chr1,626781,626821,trf,2,20.0,2,100,0,80,0,0,50,50,1.00,GT
+chr1,645187,645222,trf,4,8.8,4,87,0,52,22,2,2,71,1.13,TTTA
+chr1,645219,645261,trf,12,3.4,12,81,15,50,0,19,0,80,0.70,TTTTTCCTTCTT
+chr1,650383,650423,trf,2,20.0,2,100,0,80,50,50,0,0,1.00,AC
+chr1,653639,653790,trf,4,38.2,4,84,12,206,72,0,27,0,0.84,AGAA
+chr1,667897,668052,trf,12,12.2,12,76,12,107,47,10,3,38,1.54,ATATACATATAT
+chr1,667897,668052,trf,2,78.5,2,74,5,91,47,10,3,38,1.54,AT
+chr1,667899,668054,trf,10,15.1,10,74,12,109,47,10,3,38,1.55,ATATATATAC
+chr1,711957,712094,trf,7,19.1,7,75,19,115,40,3,1,54,1.27,TTATATA
+chr1,711958,712094,trf,2,75.5,2,71,20,104,41,3,1,53,1.27,TA
+chr1,711962,712095,trf,11,12.0,11,78,13,130,40,4,1,53,1.30,TATTATATATC
+chr1,725051,725080,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,747743,747784,trf,3,13.7,3,84,0,55,73,24,0,2,0.96,AAC
+chr1,759446,759498,trf,2,26.0,2,96,0,95,51,48,0,0,1.00,AC
+chr1,762644,762739,trf,4,23.0,4,75,10,75,52,0,47,0,1.00,AAGG
+chr1,762660,762809,trf,8,18.5,8,76,12,110,44,0,55,0,0.99,AAGGAGGG
+chr1,762751,762804,trf,4,13.2,4,83,0,70,32,0,67,0,0.91,GAGG
+chr1,776604,776633,trf,5,5.8,5,100,0,58,82,17,0,0,0.66,AAAAC
+chr1,788368,788435,trf,2,34.5,2,72,14,52,47,2,47,1,1.26,AG
+chr1,791052,791098,trf,5,8.5,6,86,13,57,30,0,54,15,1.41,GGAATG
+chr1,808289,808338,trf,7,6.4,8,80,15,59,51,38,0,10,1.36,ACATACAC
+chr1,832736,832781,trf,5,9.0,5,100,0,90,0,0,20,80,0.72,GTTTT
+chr1,860178,860211,trf,1,33.0,1,100,0,66,0,0,0,100,0.00,T
+chr1,861778,862160,trf,11,35.5,11,72,14,178,37,1,32,28,1.64,ATAGATGATAG
+chr1,861788,862168,trf,4,101.5,4,69,16,136,37,1,33,27,1.64,GATA
+chr1,861809,862004,trf,7,27.3,7,71,21,63,38,1,30,29,1.64,TGATAGA
+chr1,869462,869520,trf,4,15.2,4,78,10,59,24,27,1,46,1.62,TATC
+chr1,875829,876434,trf,10,60.5,10,85,3,709,18,64,4,12,1.44,CCCCACACTC
+chr1,888320,888377,trf,4,14.5,4,75,3,53,47,3,47,1,1.29,GAAG
+chr1,888349,888501,trf,8,19.2,8,69,17,50,52,0,44,1,1.17,AAGGAAAG
+chr1,888349,888588,trf,12,19.8,12,66,16,59,51,1,46,1,1.17,AAGGAAAGAAGG
+chr1,888598,888679,trf,4,19.8,4,74,5,63,37,1,61,0,1.04,AGGG
+chr1,893801,893840,trf,2,19.5,2,100,0,78,51,0,0,48,1.00,AT
+chr1,898640,898675,trf,11,3.1,11,84,8,52,14,17,31,37,1.89,GTTTATGGCCA
+chr1,908629,908743,trf,7,16.7,7,70,21,82,25,1,67,5,1.21,GGGGAGA
+chr1,908808,908852,trf,12,3.6,12,75,6,52,22,2,72,2,1.07,AGGGGGGAAGGG
+chr1,948646,948677,trf,11,2.8,11,95,0,53,9,45,22,22,1.81,TCACCCTGGCT
+chr1,950518,950550,trf,12,2.4,14,80,20,50,43,31,18,6,1.75,ACACACGCAAAGGT
+chr1,950520,950548,trf,12,2.3,12,100,0,56,42,28,21,7,1.79,ACACGCAAAGGT
+chr1,954841,954876,trf,5,7.2,5,90,6,54,77,22,0,0,0.78,AAAAC
+chr1,965303,965346,trf,4,10.5,4,80,5,50,20,2,6,69,1.23,TTTA
+chr1,969452,969542,trf,8,11.6,8,73,15,64,16,10,35,37,1.82,ATGTGTGC
+chr1,969469,969521,trf,10,5.2,10,75,25,56,13,9,38,38,1.77,GTGTGCATGT
+chr1,975106,975157,trf,7,6.9,7,79,20,59,58,0,41,0,0.98,AAGAGAG
+chr1,975107,975178,trf,10,6.6,11,75,18,78,57,0,42,0,0.98,AGAGAGAAGAG
+chr1,975107,975180,trf,2,41.5,2,71,24,58,57,0,42,0,0.98,AG
+chr1,984611,984657,trf,4,11.5,4,100,0,92,23,0,0,76,0.79,TTAT
+chr1,991509,991543,trf,5,6.6,5,89,3,50,2,14,0,82,0.79,TTTCT
+chr1,1007746,1007780,trf,1,34.0,1,100,0,68,0,0,0,100,0.00,T
+chr1,1019941,1020044,trf,6,16.7,6,69,15,59,20,3,74,0,1.03,GGGGGA
+chr1,1033632,1033833,trf,6,32.2,6,67,16,79,14,60,18,5,1.54,CCCAGC
+chr1,1033685,1033833,trf,6,24.3,6,69,15,81,14,60,18,5,1.53,CCCCAG
+chr1,1040965,1041138,trf,5,33.8,5,67,9,82,6,19,70,2,1.23,GGGGC
+chr1,1041096,1041142,trf,11,4.2,11,89,8,67,6,17,76,0,1.00,GGGGCGGGAGC
+chr1,1062046,1062204,trf,4,39.0,4,67,16,67,4,65,1,27,1.22,CCTC
+chr1,1067532,1067565,trf,12,2.8,12,95,0,57,9,33,36,21,1.85,CTGCAGGCCTGT
+chr1,1102071,1102096,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,1102614,1102649,trf,1,35.0,1,100,0,70,100,0,0,0,0.00,A
+chr1,1105884,1105919,trf,4,8.8,4,93,0,52,71,0,5,22,1.07,AAAT
+chr1,1109411,1109440,trf,12,2.3,13,94,5,51,0,34,0,65,0.93,TTTCCTTTCCTCT
+chr1,1117068,1117207,trf,9,15.9,9,72,13,103,23,62,7,6,1.44,CCCCCCAGA
+chr1,1123495,1124249,trf,12,65.5,12,69,17,301,29,45,13,11,1.79,CACACACCTGCA
+chr1,1130186,1130216,trf,1,30.0,1,100,0,60,100,0,0,0,0.00,A
+chr1,1141106,1141342,trf,6,39.2,6,67,10,88,13,67,4,13,1.37,TCCCCA
+chr1,1141106,1141540,trf,12,36.8,12,67,9,135,14,66,4,14,1.40,TCCCCACCCCCA
+chr1,1141494,1141547,trf,12,4.4,12,86,9,81,9,67,5,16,1.37,TCCCCACCCCTG
+chr1,1157345,1157428,trf,9,9.2,9,100,0,166,10,67,10,10,1.43,CCATCCCCG
+chr1,1166508,1166560,trf,12,4.3,12,85,0,59,13,76,7,1,1.07,CCCCACCCGCAC
+chr1,1166517,1166548,trf,6,5.2,6,92,0,53,19,80,0,0,0.71,CACCCC
+chr1,1170467,1170574,trf,4,27.0,4,71,12,62,0,66,0,31,1.04,CTCC
+chr1,1172726,1172845,trf,12,10.5,11,72,20,68,68,0,0,29,1.01,TAAAATAATAA
+chr1,1176988,1177109,trf,8,14.9,8,76,1,80,3,12,40,43,1.59,TGTGTGTC
+chr1,1177044,1177111,trf,2,33.5,2,78,0,71,1,5,46,46,1.36,TG
+chr1,1177248,1177297,trf,10,5.1,10,74,18,50,2,10,40,46,1.49,TGTCTGTGTG
+chr1,1180866,1180982,trf,6,19.5,6,79,10,123,2,64,18,14,1.40,CTGCCC
+chr1,1181009,1181040,trf,6,5.2,6,92,0,53,0,61,19,19,1.35,GCCCCT
+chr1,1195386,1195411,trf,11,2.3,11,100,0,50,8,16,8,68,1.38,TTTGTTCTACT
+chr1,1197856,1197887,trf,7,4.4,7,91,0,53,3,70,25,0,1.02,CCCGCGC
+chr1,1244720,1245295,trf,12,51.1,12,67,18,194,8,67,0,24,1.21,CCCCCCACTCCT
+chr1,1244879,1245255,trf,9,38.3,9,68,19,120,6,67,0,24,1.19,CCCTCCTCC
+chr1,1265564,1265649,trf,2,43.5,2,90,4,102,1,4,43,50,1.30,GT
+chr1,1266880,1266905,trf,5,5.0,5,100,0,50,20,0,0,80,0.72,ATTTT
+chr1,1271974,1272004,trf,1,30.0,1,100,0,60,100,0,0,0,0.00,A
+chr1,1284099,1284186,trf,9,10.0,8,73,22,61,4,1,78,16,0.98,GGGGGGGT
+chr1,1284149,1284224,trf,9,6.8,12,68,30,51,6,0,72,21,1.08,GGGGGTTGGTGA
+chr1,1284162,1284211,trf,9,5.1,9,80,20,55,2,0,77,20,0.87,GGGGGGTTG
+chr1,1288370,1288440,trf,11,7.5,11,66,33,56,0,51,21,27,1.48,GTCCCTGCTCC
+chr1,1308178,1308209,trf,11,2.8,11,100,0,62,6,19,74,0,1.03,GGGCGCGGGGA
+chr1,1317395,1317420,trf,12,2.1,12,100,0,50,92,0,8,0,0.40,AAAAAAAAAAGA
+chr1,1323866,1324233,trf,8,45.8,8,79,0,293,8,13,61,15,1.55,GGGGCTGG
+chr1,1324762,1324799,trf,11,3.3,11,92,3,56,5,16,75,2,1.10,GGGCGAGGGCG
+chr1,1340738,1341233,trf,8,63.8,8,65,17,154,29,46,13,9,1.75,CACACATG
+chr1,1340811,1340840,trf,12,2.4,12,100,0,58,34,51,6,6,1.55,CACACACCTGCA
+chr1,1366335,1366388,trf,8,6.0,9,79,16,58,22,0,45,32,1.53,GTGTGAATG
+chr1,1367198,1367232,trf,10,3.6,10,84,15,54,17,0,50,32,1.47,AGTGTGGATG
+chr1,1368178,1368211,trf,1,33.0,1,100,0,66,0,0,0,100,0.00,T
+chr1,1396571,1396597,trf,1,26.0,1,100,0,52,0,0,0,100,0.00,T
+chr1,1411891,1412196,trf,7,37.6,7,72,26,182,13,37,28,21,1.91,GTCCCAG
+chr1,1427957,1428214,trf,5,52.2,5,76,4,218,29,1,68,0,1.01,GGAGG
+chr1,1431026,1431058,trf,8,4.0,8,100,0,64,12,75,0,12,1.06,CACCCCCT
+chr1,1443673,1443727,trf,1,54.0,1,100,0,108,0,0,0,100,0.00,T
+chr1,1449133,1449385,trf,6,42.5,6,68,3,98,5,38,9,46,1.59,TCTCTC
+chr1,1449160,1449396,trf,10,23.9,10,67,21,63,5,38,10,46,1.61,CTCTCTCTGA
+chr1,1452797,1452839,trf,8,5.2,8,88,5,50,83,2,14,0,0.75,AAAAAAAG
+chr1,1455216,1455243,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,1465589,1465614,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,1469099,1469136,trf,1,37.0,1,100,0,74,100,0,0,0,0.00,A
+chr1,1474176,1474212,trf,12,2.9,13,92,8,58,0,11,0,88,0.50,TTTTCTTTTTTTC
+chr1,1477677,1477725,trf,5,9.8,5,95,4,89,18,0,0,81,0.70,TTTTA
+chr1,1499586,1499611,trf,1,25.0,1,100,0,50,0,0,0,100,0.00,T
+chr1,1500604,1500647,trf,12,3.6,12,83,0,50,46,0,9,44,1.35,ATATATAAATGT
+chr1,1501853,1501898,trf,5,9.2,5,81,13,58,0,0,17,82,0.68,GTTTT
+chr1,1503954,1503981,trf,5,5.4,5,100,0,54,18,18,18,44,1.87,TTGCA
+chr1,1521298,1521329,trf,1,31.0,1,100,0,62,100,0,0,0,0.00,A
+chr1,1530828,1530855,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,1540605,1540639,trf,5,6.8,5,86,0,50,2,44,32,20,1.67,GCTCG
+chr1,1543050,1543075,trf,6,4.2,6,100,0,50,32,20,48,0,1.50,CAGAGG
+chr1,1543704,1543818,trf,12,9.4,12,63,5,59,8,50,21,18,1.73,GTCACGGCCTCG
+chr1,1549521,1549551,trf,10,3.0,10,90,0,51,86,0,13,0,0.57,AAAAAAAAAG
+chr1,1564386,1564411,trf,12,2.1,12,100,0,50,32,52,16,0,1.44,CACGCACGCACA
+chr1,1571244,1571282,trf,1,38.0,1,100,0,76,100,0,0,0,0.00,A
+chr1,1573429,1573456,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,1585290,1585321,trf,4,7.8,4,92,0,53,3,0,19,77,0.90,TTTG
+chr1,1585949,1585978,trf,3,9.7,3,100,0,58,68,0,0,31,0.89,AAT
+chr1,1588451,1588476,trf,12,2.1,12,100,0,50,92,0,8,0,0.40,AAAAAAAAAGAA
+chr1,1589160,1589203,trf,4,10.8,4,100,0,86,23,0,0,76,0.78,TTTA
+chr1,1592518,1592543,trf,4,6.2,4,100,0,50,76,0,0,24,0.80,AAAT
+chr1,1594910,1596817,trf,10,187.3,10,68,13,779,46,13,38,1,1.50,AGAGACAGAG
+chr1,1596407,1596817,trf,12,36.3,12,66,21,142,45,8,42,3,1.52,GAGAGAGGCAGA
+chr1,1604293,1604322,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,1608029,1608126,trf,2,52.0,2,73,17,84,45,1,5,48,1.31,AT
+chr1,1609821,1609851,trf,12,2.5,12,88,0,51,90,0,10,0,0.47,AAAAAAAAAAAG
+chr1,1612528,1612574,trf,10,4.5,10,84,15,51,0,6,4,89,0.60,TTTTTTCTTT
+chr1,1615888,1615914,trf,12,2.2,12,100,0,52,0,26,57,15,1.38,CGGCGCTGGGGT
+chr1,1629846,1629871,trf,7,3.6,7,100,0,50,12,76,12,0,1.04,CCCCCAG
+chr1,1641701,1641740,trf,3,13.0,3,88,0,60,0,61,0,38,0.96,CTC
+chr1,1650303,1650330,trf,12,2.2,12,100,0,54,59,0,0,40,0.98,TAAATATTTAAA
+chr1,1653825,1653863,trf,2,19.0,2,100,0,76,50,50,0,0,1.00,AC
+chr1,1658918,1658950,trf,3,10.7,3,93,0,55,0,62,34,3,1.11,CGC
+chr1,1673961,1673990,trf,8,3.8,8,90,9,51,93,0,6,0,0.36,AAAAAAGA
+chr1,1673961,1673994,trf,11,3.0,11,91,8,50,90,0,9,0,0.44,AAAAAAAAAAG
+chr1,1680301,1680333,trf,10,3.1,10,91,8,55,78,0,3,18,0.89,AAAAATTAAA
+chr1,1681988,1682040,trf,1,52.0,1,100,0,104,100,0,0,0,0.00,A
+chr1,1684789,1684814,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,1686306,1686339,trf,10,3.4,10,95,4,59,0,6,0,93,0.33,TTTTCTTTTT
+chr1,1692365,1692412,trf,7,6.7,7,90,0,67,27,51,21,0,1.48,GCACCCA
+chr1,1694689,1694724,trf,1,35.0,1,100,0,70,100,0,0,0,0.00,A
+chr1,1699598,1699638,trf,9,4.4,9,93,0,71,2,10,62,25,1.39,GTGTGCGGG
+chr1,1708833,1708872,trf,3,13.0,3,88,0,60,0,61,0,38,0.96,CTC
+chr1,1716814,1716852,trf,1,38.0,1,100,0,76,100,0,0,0,0.00,A
+chr1,1723488,1723523,trf,1,35.0,1,100,0,70,100,0,0,0,0.00,A
+chr1,1736801,1736846,trf,1,45.0,1,81,0,54,91,0,8,0,0.43,A
+chr1,1745640,1745687,trf,7,6.7,7,87,0,58,29,48,21,0,1.50,GCACCCA
+chr1,1752908,1752936,trf,3,9.3,3,100,0,56,0,67,0,32,0.91,CCT
+chr1,1762759,1762794,trf,4,8.8,4,100,0,70,51,0,22,25,1.48,AATG
+chr1,1766410,1766450,trf,1,40.0,1,100,0,80,100,0,0,0,0.00,A
+chr1,1768372,1768409,trf,11,3.3,11,85,7,56,78,21,0,0,0.75,ACAAAACAAAA
+chr1,1768374,1768409,trf,6,6.0,6,90,6,54,80,20,0,0,0.72,AAAACA
+chr1,1769969,1770015,trf,6,7.7,6,100,0,92,84,15,0,0,0.62,AAAACA
+chr1,1773676,1773730,trf,2,27.0,2,100,0,108,0,0,50,50,1.00,TG
+chr1,1779667,1779692,trf,2,12.5,2,100,0,50,0,0,48,52,1.00,TG
+chr1,1807463,1807493,trf,1,30.0,1,100,0,60,100,0,0,0,0.00,A
+chr1,1808624,1808662,trf,4,10.2,4,83,16,55,0,0,23,76,0.79,GTTT
+chr1,1812393,1812429,trf,2,18.0,2,88,0,54,50,44,0,5,1.25,AC
+chr1,1814797,1814828,trf,1,31.0,1,93,0,53,96,0,3,0,0.21,A
+chr1,1823242,1823267,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,1828874,1828913,trf,2,19.5,2,89,0,60,51,43,0,5,1.24,AC
+chr1,1845578,1845615,trf,3,13.0,3,83,11,51,72,0,0,27,0.84,AAT
+chr1,1845824,1845872,trf,2,24.0,2,100,0,96,50,50,0,0,1.00,AC
+chr1,1855321,1855359,trf,10,3.9,10,86,3,51,86,0,13,0,0.56,AAAAAAGAAA
+chr1,1865261,1865300,trf,11,3.5,11,92,0,69,89,10,0,0,0.48,AAAAAACAAAA
+chr1,1869185,1869211,trf,1,26.0,1,100,0,52,100,0,0,0,0.00,A
+chr1,1874605,1874632,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,1901105,1901253,trf,4,36.0,4,82,5,179,67,0,32,0,0.91,AAGA
+chr1,1904424,1904468,trf,4,10.5,4,90,9,70,75,0,0,25,0.81,AAAT
+chr1,1919188,1919223,trf,9,3.9,9,100,0,70,22,22,54,0,1.45,AGCGGCAGG
+chr1,1927108,1927134,trf,8,3.2,8,100,0,52,15,38,34,11,1.83,CAGGGTCC
+chr1,1929363,1929452,trf,8,10.6,8,73,20,58,22,1,70,5,1.14,GGGAGGGA
+chr1,1930749,1930774,trf,12,2.1,12,100,0,50,44,8,32,16,1.76,AGTTGCAAAGGA
+chr1,1932065,1932101,trf,7,5.1,7,93,0,63,86,13,0,0,0.58,CAAAAAA
+chr1,1932580,1932610,trf,12,2.6,12,94,5,53,0,10,0,90,0.47,TTTTTTTCTTTC
+chr1,1945889,1945916,trf,10,2.7,10,100,0,54,7,7,44,40,1.60,GTGTGTGCAT
+chr1,1945990,1946068,trf,8,9.6,8,74,2,57,6,14,43,35,1.71,TGTGTGCG
+chr1,1948874,1949153,trf,4,68.0,4,76,14,178,0,55,0,43,1.04,TTCC
+chr1,1949120,1949166,trf,4,10.8,4,84,11,56,0,69,0,30,0.89,TCCC
+chr1,1952532,1952615,trf,4,21.0,4,76,16,57,66,1,32,0,1.00,AAGA
+chr1,1963456,1963483,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,1967880,1968133,trf,4,64.0,4,73,3,118,38,1,35,24,1.63,GTGA
+chr1,1967880,1968195,trf,12,26.7,12,73,9,191,40,1,35,23,1.63,GTGAGTGAATGA
+chr1,1967881,1968141,trf,8,33.4,8,77,9,207,39,1,35,24,1.63,TGAGTGAA
+chr1,1967929,1968191,trf,4,66.8,4,73,5,149,41,1,33,22,1.63,TGAA
+chr1,1969120,1969494,trf,5,74.8,5,74,0,226,13,55,18,13,1.69,CCCAG
+chr1,1969154,1969494,trf,10,34.5,10,76,4,260,12,55,18,12,1.69,GCCCAGCCCT
+chr1,1970906,1971423,trf,8,61.4,8,68,18,161,31,41,14,12,1.83,ACATGCAC
+chr1,1970911,1971424,trf,10,56.6,9,70,21,252,31,41,14,12,1.83,CACACTGCA
+chr1,1988824,1988873,trf,6,7.8,6,82,8,62,16,81,0,2,0.78,CCCCCA
+chr1,1993981,1994011,trf,11,2.8,11,95,5,53,86,0,0,13,0.57,AAAATAAAATA
+chr1,1996920,1996950,trf,12,2.6,12,94,5,53,93,0,6,0,0.35,AAAAGAAAAAAA
+chr1,2002819,2002845,trf,11,2.4,11,100,0,52,42,0,7,50,1.31,TTTATATAAAG
+chr1,2005903,2005947,trf,2,22.0,2,90,9,72,0,47,2,50,1.13,CT
+chr1,2012279,2012313,trf,5,6.8,5,100,0,68,82,0,0,17,0.67,AAAAT
+chr1,2016833,2016872,trf,4,10.2,4,89,10,64,76,0,23,0,0.78,AAAG
+chr1,2018334,2018397,trf,5,12.8,5,98,1,119,61,17,0,20,1.34,ATAAC
+chr1,2019273,2019303,trf,11,2.8,11,95,5,53,0,26,63,10,1.26,GGCGGGCTCGG
+chr1,2034399,2034426,trf,7,3.9,7,100,0,54,0,0,11,88,0.50,TTTTTTG
+chr1,2042029,2042160,trf,10,14.2,10,69,16,70,8,12,41,38,1.73,TGTGCATGTG
+chr1,2042032,2042099,trf,12,5.6,12,80,16,50,7,11,43,37,1.70,GCATGTGTGTGG
+chr1,2044172,2044249,trf,10,7.9,10,71,16,54,49,32,11,6,1.65,ACACACAGAT
+chr1,2091922,2091947,trf,11,2.3,11,100,0,50,52,8,0,40,1.31,AAATCTTTATA
+chr1,2095699,2095952,trf,10,25.3,10,74,0,128,0,63,1,33,1.09,CTCCCCTCCC
+chr1,2098648,2098697,trf,5,9.8,5,91,8,82,0,2,18,79,0.83,TTTTG
+chr1,2102316,2102349,trf,5,6.8,5,89,6,50,0,0,15,84,0.61,TTTTG
+chr1,2114772,2114801,trf,6,5.0,6,95,4,51,86,0,13,0,0.58,AAAAAG
+chr1,2118713,2118755,trf,2,21.0,2,100,0,84,0,0,50,50,1.00,TG
+chr1,2120293,2120322,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,2155090,2155492,trf,12,33.7,12,65,15,109,22,4,44,28,1.72,TGGTGATGATGA
+chr1,2155097,2155158,trf,3,20.3,3,72,0,50,26,3,40,29,1.72,GAT
+chr1,2155108,2155225,trf,9,11.6,9,69,20,54,22,3,44,29,1.69,TGATGATGG
+chr1,2155347,2155409,trf,9,6.9,9,74,7,54,24,4,45,25,1.73,GGTGATGAC
+chr1,2160232,2160272,trf,2,20.0,2,94,0,71,0,2,50,47,1.14,GT
+chr1,2175460,2175535,trf,12,6.3,12,78,1,71,29,65,1,4,1.19,CCAACCCCCAAC
+chr1,2187280,2187322,trf,11,3.7,11,87,12,59,0,9,0,90,0.45,TTTTTTTTTTC
+chr1,2199391,2199421,trf,5,6.0,5,100,0,60,20,60,20,0,1.37,CCCAG
+chr1,2207909,2207955,trf,2,23.0,2,100,0,92,0,0,50,50,1.00,GT
+chr1,2211198,2211246,trf,10,5.2,9,85,14,55,0,12,0,87,0.54,TTTCTTTTT
+chr1,2211399,2211436,trf,2,18.5,2,100,0,74,48,0,0,51,1.00,TA
+chr1,2211435,2211464,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,2217930,2217960,trf,11,2.6,11,94,5,51,90,6,3,0,0.56,AAAAAAAAAAC
+chr1,2227713,2227847,trf,10,13.1,10,67,7,63,14,30,48,6,1.69,GCGGGGCCGA
+chr1,2227945,2228005,trf,10,6.3,10,77,9,63,1,28,70,0,0.97,GCGCGGGGCG
+chr1,2227951,2228009,trf,5,11.4,5,76,9,55,1,27,70,0,0.97,GGGGC
+chr1,2228469,2228499,trf,11,2.7,11,89,0,51,3,26,70,0,1.03,CGGGGGGCGCG
+chr1,2230958,2230984,trf,12,2.2,12,100,0,52,7,7,42,42,1.62,GTGCATGTGTGT
+chr1,2241941,2241990,trf,10,5.1,10,82,9,57,0,14,40,44,1.45,TGCCTGTGTG
+chr1,2241952,2241999,trf,10,4.7,10,89,0,58,2,10,44,42,1.51,GTGTGTGTGC
+chr1,2245788,2245814,trf,1,26.0,1,100,0,52,0,0,0,100,0.00,T
+chr1,2257718,2257753,trf,4,8.8,4,87,0,52,25,2,0,71,1.00,TTTA
+chr1,2262022,2262048,trf,8,3.2,8,100,0,52,11,38,11,38,1.78,CTCCTGAT
+chr1,2315269,2315295,trf,6,4.3,6,100,0,52,0,15,84,0,0.62,GGGGGC
+chr1,2325105,2325199,trf,4,21.8,4,81,14,89,1,55,0,43,1.06,TTCC
+chr1,2325105,2325199,trf,9,10.8,9,86,6,122,1,55,0,43,1.06,TTCCTTCCC
+chr1,2325241,2325305,trf,2,33.0,2,84,12,89,0,50,1,48,1.10,CT
+chr1,2326987,2327567,trf,8,72.8,8,73,17,360,58,26,14,0,1.40,ACACAGAA
+chr1,2342823,2342916,trf,5,18.4,5,93,6,161,21,0,0,78,0.75,TATTT
+chr1,2345829,2345855,trf,2,13.0,2,100,0,52,50,50,0,0,1.00,CA
+chr1,2348619,2348668,trf,12,4.1,12,74,10,55,28,48,20,2,1.60,CACGCACGCACA
+chr1,2348745,2348840,trf,10,9.9,10,68,8,54,28,48,20,3,1.64,CACGCACACA
+chr1,2366699,2366724,trf,12,2.1,12,100,0,50,32,0,24,44,1.54,TTTTAGTAGAGA
+chr1,2366956,2367032,trf,12,6.3,12,95,0,134,67,9,9,14,1.42,AAAATACATAGA
+chr1,2371210,2371241,trf,3,10.3,3,92,0,53,64,35,0,0,0.94,AAC
+chr1,2388775,2388800,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,2401202,2401429,trf,7,32.4,7,75,16,186,0,65,1,33,1.05,TCCTCCC
+chr1,2423164,2423203,trf,4,10.0,4,88,5,62,0,0,23,76,0.78,GTTT
+chr1,2425219,2425331,trf,12,8.8,12,74,11,80,48,29,2,19,1.63,ACACACATATAT
+chr1,2435454,2435492,trf,7,5.4,7,100,0,76,13,15,57,13,1.65,GGCTGGA
+chr1,2441212,2441249,trf,10,3.7,10,88,0,56,5,59,24,10,1.52,CCCCTGCCAG
+chr1,2449499,2449536,trf,4,9.2,4,100,0,74,51,48,0,0,1.00,AACC
+chr1,2480999,2481029,trf,10,3.0,10,95,0,51,40,46,10,3,1.54,ACACGCACAC
+chr1,2481142,2481184,trf,10,4.2,10,93,0,66,9,52,21,16,1.72,CCAGCTCCTG
+chr1,2506881,2506925,trf,11,4.0,11,93,0,79,20,9,61,9,1.53,AAGGGCTGGGG
+chr1,2548249,2548277,trf,12,2.3,12,100,0,56,50,10,39,0,1.37,CAGAGGAAGAGA
+chr1,2548806,2548840,trf,7,4.9,7,85,0,50,85,14,0,0,0.60,CAAAAAA
+chr1,2556548,2556573,trf,6,4.2,6,100,0,50,0,32,0,68,0.90,TTCTCT
+chr1,2566825,2566869,trf,4,11.0,4,100,0,88,25,0,0,75,0.81,ATTT
+chr1,2608499,2608691,trf,8,24.6,8,67,17,93,48,31,3,16,1.63,ATACACAC
+chr1,2608674,2608735,trf,8,7.8,8,71,10,54,45,26,4,22,1.72,ACACATAT
+chr1,2608912,2608977,trf,6,10.5,6,74,12,51,50,27,1,20,1.57,ATACAC
+chr1,2609034,2609081,trf,2,23.5,2,100,0,94,51,48,0,0,1.00,AC
+chr1,2613855,2613888,trf,7,4.9,7,96,3,59,84,15,0,0,0.61,AAAAACA
+chr1,2629028,2629057,trf,6,4.8,6,100,0,58,13,17,68,0,1.20,GGCGGA
+chr1,2632369,2632398,trf,4,7.5,4,92,7,51,44,0,27,27,1.54,TGAA
+chr1,2784960,2785019,trf,10,5.9,10,91,0,100,1,37,38,22,1.64,GCTCTGGGCC
+chr1,2788279,2788444,trf,9,17.3,9,69,19,79,6,2,40,50,1.42,TGTTGTGTG
+chr1,2788282,2788444,trf,11,14.6,11,71,17,97,6,2,40,50,1.42,TGTGTGTTGTG
+chr1,2788337,2788445,trf,2,59.0,2,73,17,92,3,1,44,50,1.30,TG
+chr1,2792006,2792033,trf,1,27.0,1,100,0,54,0,0,0,100,0.00,T
+chr1,2797990,2799182,trf,8,148.9,8,76,11,1021,13,57,13,15,1.65,TCCCAGCC
+chr1,2819609,2819697,trf,12,7.2,12,67,16,56,35,42,11,11,1.77,CACACACCTGCA
+chr1,2820586,2820707,trf,8,15.8,8,72,13,51,13,22,54,9,1.68,CCAGGGGT
+chr1,2824891,2824941,trf,2,25.0,2,100,0,100,0,0,50,50,1.00,GT
+chr1,2838348,2838375,trf,1,27.0,1,100,0,54,0,0,0,100,0.00,T
+chr1,2840668,2840697,trf,9,3.2,9,100,0,58,13,31,34,20,1.92,GACCTCTGG
+chr1,2840818,2840979,trf,10,15.5,10,72,16,114,13,3,46,37,1.58,GTGTGTGAGT
+chr1,2840828,2840967,trf,6,22.8,6,69,13,70,13,2,46,36,1.58,GTGTGA
+chr1,2845230,2845266,trf,5,7.2,5,100,0,72,80,19,0,0,0.71,AAAAC
+chr1,2859183,2859574,trf,11,36.5,11,75,13,275,46,0,52,0,1.05,GGAGGAAGGAA
+chr1,2859185,2859606,trf,4,113.0,4,70,19,207,46,0,52,0,1.09,AGGA
+chr1,2859185,2859606,trf,7,56.5,8,69,18,207,46,0,52,0,1.09,AGGAAGGA
+chr1,2872903,2873087,trf,4,46.0,4,86,11,254,0,26,0,73,0.84,CTTT
+chr1,2889890,2890068,trf,10,17.7,10,78,5,162,17,1,68,12,1.28,GGTGGAGGGA
+chr1,2896468,2896500,trf,12,2.7,12,95,0,55,37,43,9,9,1.69,GCACACACACAT
+chr1,2896518,2896562,trf,10,4.7,10,74,25,51,38,40,9,11,1.73,CACACATGCA
+chr1,2896670,2897134,trf,8,53.8,9,65,24,111,38,33,10,17,1.84,CACATGTCA
+chr1,2896722,2897133,trf,8,49.6,8,67,22,201,38,34,10,16,1.84,ACATGCAC
+chr1,2897175,2897200,trf,12,2.1,12,100,0,50,40,44,8,8,1.63,CACACACATGCA
+chr1,2899043,2899082,trf,4,9.8,4,94,0,69,74,23,2,0,0.94,AAAC
+chr1,2915583,2915691,trf,8,13.5,8,66,18,55,37,37,12,12,1.81,CACACATG
+chr1,2915658,2915768,trf,10,10.3,10,66,19,53,38,35,11,14,1.83,GCACACACAT
+chr1,2926526,2927260,trf,10,72.4,10,79,5,524,7,20,46,24,1.77,GCTGGGCTGT
+chr1,2930165,2930244,trf,12,6.2,12,72,13,61,35,37,13,12,1.83,CACACACATGTG
+chr1,2945133,2945164,trf,12,2.5,12,94,5,53,6,6,51,35,1.53,GTGGGTCAGTGT
+chr1,2950049,2950076,trf,8,3.4,8,100,0,54,0,25,48,25,1.52,TGCTGGGC
+chr1,2964500,2964602,trf,4,25.5,4,82,9,120,23,52,0,23,1.47,CATC
+chr1,2964773,2964814,trf,4,10.2,4,94,0,73,29,48,0,21,1.50,ATCC
+chr1,2965026,2965286,trf,4,64.0,4,72,15,160,25,48,0,26,1.55,CATC
+chr1,2965374,2965426,trf,4,13.2,4,86,11,72,26,51,0,21,1.47,CATC
+chr1,2985786,2986114,trf,4,85.0,4,81,8,376,25,46,1,26,1.60,TCCA
+chr1,2989095,2989617,trf,4,136.2,4,74,13,411,23,47,1,27,1.60,ATCC
+chr1,2997705,2997819,trf,12,8.8,12,81,12,120,35,21,12,30,1.90,CAGTGTATACTA
+chr1,3013336,3013477,trf,6,23.5,6,71,8,72,0,39,12,47,1.46,TCTCTG
+chr1,3013360,3013472,trf,2,58.0,2,72,7,52,0,42,9,46,1.43,TC
+chr1,3016349,3016660,trf,4,80.0,4,63,9,79,37,0,59,2,1.14,GGAG
+chr1,3025902,3026456,trf,12,46.2,12,69,13,266,22,1,43,31,1.65,TGATGGTGATGA
+chr1,3025980,3026299,trf,6,54.3,6,70,12,225,21,0,46,31,1.58,GTGATG
+chr1,3051129,3051270,trf,4,34.5,4,70,9,79,26,60,1,10,1.38,CACC
+chr1,3051480,3051561,trf,4,20.8,4,75,14,62,27,51,1,19,1.54,CATC
+chr1,3051495,3051592,trf,12,8.2,12,69,13,58,27,53,1,17,1.50,CCATCCATCCAC
+chr1,3051620,3051925,trf,12,25.9,12,69,12,107,25,57,1,15,1.48,CCACCCATCCAC
+chr1,3051745,3052268,trf,4,132.8,4,71,15,170,26,50,0,22,1.55,CATC
+chr1,3069056,3069081,trf,3,8.3,3,100,0,50,0,32,68,0,0.90,GGC
+chr1,3088444,3088482,trf,4,9.8,4,94,5,69,23,0,0,76,0.79,TTTA
+chr1,3088750,3088788,trf,3,12.3,3,84,15,51,31,0,0,68,0.90,TAT
+chr1,3088761,3088801,trf,4,10.5,4,86,13,50,27,0,0,72,0.85,TTAT
+chr1,3109083,3109116,trf,3,11.0,3,100,0,66,66,0,0,33,0.92,AAT
+chr1,3114138,3114237,trf,8,12.0,8,82,9,101,38,48,12,1,1.47,CACACGCA
+chr1,3114138,3114322,trf,10,18.3,10,68,13,101,36,44,15,3,1.62,CACACGCACA
+chr1,3114479,3114540,trf,8,7.4,8,72,7,50,37,42,14,4,1.68,ACACGCAC
+chr1,3114510,3114560,trf,8,6.5,8,75,9,50,42,38,12,8,1.71,CACACATG
+chr1,3152280,3152427,trf,4,36.8,4,83,0,168,23,42,0,33,1.60,CATC
+chr1,3158654,3158781,trf,4,31.8,4,76,16,113,0,28,0,71,0.86,TTTC
+chr1,3173943,3173969,trf,12,2.2,12,100,0,52,7,30,38,23,1.83,GGCCCGTGCTAT
+chr1,3175983,3176013,trf,4,7.5,4,100,0,60,26,50,23,0,1.50,CAGC
+chr1,3176028,3176347,trf,4,80.0,4,69,9,168,24,44,1,29,1.64,ATCC
+chr1,3176592,3176777,trf,4,46.8,4,72,6,135,22,43,2,31,1.65,TCCA
+chr1,3176895,3176935,trf,12,3.3,12,85,0,62,25,52,0,22,1.47,CCATCCATCCAC
+chr1,3180162,3180204,trf,7,5.9,7,78,15,50,0,2,19,78,0.86,TGTTTTT
+chr1,3180968,3181932,trf,12,75.7,11,78,14,297,25,32,16,24,1.96,CGGTCTTAACA
+chr1,3181916,3182035,trf,10,10.8,10,72,21,80,30,31,10,26,1.91,CTTACACATG
+chr1,3200909,3201011,trf,3,33.7,3,69,16,59,41,0,57,0,1.05,GAG
+chr1,3202335,3202394,trf,10,5.9,10,83,0,82,13,11,62,11,1.54,GCTGGGGGAG
+chr1,3208664,3208702,trf,5,7.6,5,96,0,58,86,0,13,0,0.56,AAAAG
+chr1,3211792,3211840,trf,10,5.0,10,80,10,55,8,25,39,27,1.84,GCGTGTGCAT
+chr1,3223103,3223128,trf,1,25.0,1,100,0,50,0,0,0,100,0.00,T
+chr1,3225530,3225574,trf,2,22.0,2,100,0,88,0,0,50,50,1.00,TG
+chr1,3239945,3240138,trf,5,38.6,5,80,13,71,53,0,45,1,1.07,AGAGA
+chr1,3240012,3240108,trf,5,19.8,5,87,10,146,42,0,57,0,0.98,GGAGA
+chr1,3273817,3273851,trf,2,17.0,2,100,0,68,0,0,50,50,1.00,GT
+chr1,3277711,3277772,trf,8,7.6,8,73,0,50,34,47,14,3,1.61,CACACGCA
+chr1,3277711,3277783,trf,12,6.0,12,75,0,72,36,47,13,2,1.58,CACACGCACACA
+chr1,3277719,3277795,trf,10,7.8,10,77,5,75,36,46,13,3,1.61,CACACACACG
+chr1,3301332,3301362,trf,12,2.6,12,94,5,53,93,0,6,0,0.35,AAAAAAGAAAAA
+chr1,3316265,3316301,trf,6,6.0,6,93,0,63,2,0,80,16,0.83,GTGGGG
+chr1,3324161,3324186,trf,12,2.1,12,100,0,50,0,60,8,32,1.26,CTCCGTCTCTCC
+chr1,3325778,3326226,trf,10,45.1,10,74,3,312,8,43,19,28,1.81,CCATCCTTGG
+chr1,3335602,3335642,trf,2,20.0,2,100,0,80,50,50,0,0,1.00,AC
+chr1,3365898,3365998,trf,10,10.8,10,71,20,67,41,41,11,7,1.67,TGCACACACA
+chr1,3365902,3365968,trf,8,7.8,8,77,12,69,40,40,10,7,1.68,CACACATG
+chr1,3365902,3365986,trf,8,9.8,8,74,14,60,40,42,10,5,1.64,CACACACG
+chr1,3365917,3366018,trf,10,10.5,10,68,7,57,40,42,11,4,1.63,ACACACACGC
+chr1,3370814,3371606,trf,4,201.5,4,74,7,460,25,46,2,25,1.63,ATCC
+chr1,3373919,3373953,trf,10,3.4,10,91,0,59,44,41,14,0,1.45,ACCAGAGCCA
+chr1,3386142,3386172,trf,9,3.3,9,95,0,51,0,36,53,10,1.35,CGGGGTGCC
+chr1,3388269,3388321,trf,2,26.0,2,80,0,59,0,44,3,51,1.19,CT
+chr1,3409646,3410190,trf,2,286.5,2,67,14,249,5,3,49,42,1.42,TG
+chr1,3421851,3422386,trf,12,44.0,12,69,13,238,38,20,37,3,1.70,GCAGACAGACAG
+chr1,3421852,3422317,trf,4,115.5,4,71,7,138,39,20,37,3,1.69,CAGA
+chr1,3424789,3424820,trf,12,2.5,12,94,5,53,9,16,51,22,1.73,GGGAGCTGGTCT
+chr1,3449975,3450038,trf,2,31.5,2,83,0,63,3,7,42,46,1.49,TG
+chr1,3485931,3485968,trf,1,37.0,1,100,0,74,100,0,0,0,0.00,A
+chr1,3487133,3487180,trf,2,23.0,2,95,4,85,48,2,0,48,1.13,AT
+chr1,3503467,3503502,trf,11,3.2,11,87,0,52,28,11,60,0,1.32,GCAGAGGAGGA
+chr1,3513577,3513606,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,3538696,3538745,trf,2,24.5,2,100,0,98,0,0,48,51,1.00,TG
+chr1,3559111,3559136,trf,9,2.8,9,100,0,50,12,20,48,20,1.80,CTGGGAGCT
+chr1,3559522,3559547,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,3605082,3605216,trf,10,13.0,10,65,20,53,38,44,2,14,1.60,CACACACACT
+chr1,3605447,3605520,trf,10,7.7,10,73,11,64,46,32,1,19,1.58,ATACACACAT
+chr1,3610469,3610502,trf,3,11.3,3,93,6,59,0,69,0,30,0.88,CTC
+chr1,3661722,3661861,trf,11,12.5,11,69,15,65,45,7,3,43,1.48,TATATATTATA
+chr1,3661722,3661861,trf,2,72.0,2,69,14,87,45,7,3,43,1.48,TA
+chr1,3661872,3661906,trf,7,5.1,7,86,13,54,14,0,0,85,0.60,TATTTTT
+chr1,3661872,3661909,trf,12,3.2,12,85,14,51,16,0,0,83,0.64,TATTTTTTATTT
+chr1,3666124,3666151,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,3667749,3667793,trf,8,5.8,8,86,2,56,86,0,11,2,0.66,AAAAAGAA
+chr1,3668515,3668547,trf,2,16.0,2,100,0,64,0,0,50,50,1.00,GT
+chr1,3676121,3676177,trf,11,4.5,12,81,18,62,30,10,57,1,1.43,GGGACAGAGGAG
+chr1,3679439,3680122,trf,10,67.9,10,66,15,108,1,36,11,50,1.45,TCTCTGTCTG
+chr1,3702466,3702496,trf,7,4.3,7,100,0,60,13,73,13,0,1.10,CCCCAGC
+chr1,3705744,3705781,trf,12,3.2,12,92,3,58,32,18,35,13,1.90,ACTCAGTAGAGG
+chr1,3707812,3707839,trf,7,3.9,7,100,0,54,0,25,59,14,1.36,GGGCTGC
+chr1,3719890,3719936,trf,2,23.0,2,100,0,92,0,0,50,50,1.00,TG
+chr1,3725376,3726938,trf,4,390.8,4,71,13,385,20,0,52,26,1.52,TGGA
+chr1,3728992,3729023,trf,8,3.9,8,95,0,53,51,6,41,0,1.27,AGAGAGAC
+chr1,3728992,3729029,trf,10,3.9,10,82,13,51,51,8,40,0,1.32,AGAGACAGAG
+chr1,3734888,3734919,trf,10,3.1,10,90,0,53,6,48,12,32,1.67,TCCTTCCAGC
+chr1,3735382,3735408,trf,9,2.9,9,100,0,52,0,11,76,11,1.01,GGGCTGGGG
+chr1,3744499,3744529,trf,4,7.2,4,92,7,51,73,0,3,23,0.98,ATAA
+chr1,3747741,3747782,trf,7,5.9,7,88,8,57,0,0,24,75,0.80,GTTTTTG
+chr1,3751982,3752028,trf,12,3.7,13,83,16,62,0,13,0,86,0.56,TTTTCTTTTCTTT
+chr1,3751982,3752035,trf,8,7.1,8,76,23,62,0,13,0,86,0.56,TTTTCTTT
+chr1,3753306,3753340,trf,1,34.0,1,87,0,50,0,5,0,94,0.32,T
+chr1,3772951,3772976,trf,12,2.1,12,100,0,50,0,48,28,24,1.52,GCCCGGCTCCTT
+chr1,3797843,3797868,trf,4,6.2,4,100,0,50,24,0,0,76,0.80,TTAT
+chr1,3799550,3799584,trf,1,34.0,1,100,0,68,100,0,0,0,0.00,A
+chr1,3799761,3799815,trf,10,5.3,10,79,2,54,11,61,9,18,1.55,CCCTGCACCC
+chr1,3807443,3807474,trf,4,7.8,4,100,0,62,22,0,0,77,0.77,TTTA
+chr1,3812857,3812890,trf,6,5.7,6,85,7,50,84,15,0,0,0.61,AAAACA
+chr1,3812857,3812892,trf,11,3.1,11,91,4,52,85,14,0,0,0.59,AAAACAAAAAA
+chr1,3856800,3856847,trf,7,6.3,7,85,11,58,0,70,27,2,0.99,CCGCGCC
+chr1,3859907,3860003,trf,10,9.5,10,73,10,79,2,40,12,44,1.54,TCTCTCTCTG
+chr1,3859936,3859999,trf,6,10.0,6,78,10,63,0,38,14,47,1.44,GTCTCT
+chr1,3859937,3860003,trf,2,33.5,2,72,3,53,0,39,12,48,1.40,TC
+chr1,3868591,3868718,trf,5,25.4,5,78,3,130,36,53,8,1,1.41,ACACC
+chr1,3898516,3898554,trf,3,12.7,3,100,0,76,68,31,0,0,0.90,AAC
+chr1,3908354,3908462,trf,2,54.0,2,87,3,155,0,45,3,50,1.19,TC
+chr1,3908461,3908500,trf,2,19.5,2,100,0,78,48,51,0,0,1.00,CA
+chr1,3920080,3920614,trf,4,133.2,4,74,8,127,0,58,0,39,1.07,CCCT
+chr1,3920083,3920614,trf,12,43.5,12,67,15,166,0,58,0,39,1.07,TCCCTCCCTCCT
+chr1,3923019,3923057,trf,12,3.2,12,88,0,58,23,15,52,7,1.69,GGCAGAGGTCAG
+chr1,3926705,3926771,trf,4,16.5,4,83,0,87,24,45,0,30,1.53,TCCA
+chr1,3926942,3927531,trf,4,145.2,4,75,20,355,25,24,6,42,1.79,ATCT
+chr1,3929137,3930779,trf,7,228.0,7,67,20,625,49,42,2,6,1.39,ACACACA
+chr1,3929137,3930790,trf,11,148.6,11,68,20,634,49,42,2,6,1.39,ACACACACAAC
+chr1,3929152,3930779,trf,9,177.8,9,69,19,666,49,42,1,6,1.39,ACACACAAC
+chr1,3929152,3930790,trf,2,883.5,2,68,20,775,49,42,1,6,1.39,AC
+chr1,3936577,3936623,trf,4,11.5,4,100,0,92,23,0,0,76,0.79,TTTA
+chr1,3937211,3937242,trf,4,7.8,4,100,0,62,22,0,0,77,0.77,TTTA
+chr1,3942339,3942369,trf,1,30.0,1,100,0,60,0,0,0,100,0.00,T
+chr1,3953252,3953306,trf,10,5.4,10,86,0,72,50,5,44,0,1.25,AGAGAGAGAC
+chr1,3953252,3953306,trf,2,27.0,2,81,7,65,50,5,44,0,1.25,AG
+chr1,3959101,3959128,trf,11,2.5,11,100,0,54,18,11,70,0,1.16,GGCAGGGGAGG
+chr1,3960684,3960725,trf,4,10.2,4,100,0,82,75,0,0,24,0.80,AAAT
+chr1,3973115,3973140,trf,4,6.2,4,100,0,50,28,0,24,48,1.52,ATTG
+chr1,3985536,3985568,trf,6,5.3,6,92,0,55,34,12,3,50,1.56,ATCTAT
+chr1,3985539,3985592,trf,12,4.4,12,80,0,52,41,7,5,45,1.56,TATATCTATATA
+chr1,3985857,3985894,trf,2,19.0,2,94,5,67,48,0,51,0,1.00,AG
+chr1,3986092,3986154,trf,2,31.0,2,100,0,124,50,0,0,50,1.00,AT
+chr1,4005812,4005844,trf,6,5.5,6,96,3,57,0,12,0,87,0.54,TTTCTT
+chr1,4007038,4007102,trf,10,6.4,10,72,13,51,48,12,37,1,1.51,CAGAGAGAGA
+chr1,4007161,4007190,trf,8,3.6,8,100,0,58,51,10,37,0,1.36,AGAGAGAC
+chr1,4013473,4013498,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,4018248,4018316,trf,10,6.6,10,75,18,59,41,41,8,8,1.67,TGCACACACA
+chr1,4019586,4019611,trf,8,3.1,8,100,0,50,0,24,24,52,1.48,TCCTGGTT
+chr1,4024823,4025234,trf,4,108.5,4,72,13,316,23,26,3,47,1.67,TCTA
+chr1,4026435,4026462,trf,1,27.0,1,100,0,54,0,0,0,100,0.00,T
+chr1,4039784,4039812,trf,1,28.0,1,100,0,56,100,0,0,0,0.00,A
+chr1,4043748,4043877,trf,12,10.3,12,69,14,50,0,48,0,51,1.06,CTTCTCCTTCTT
+chr1,4043751,4043821,trf,3,23.7,3,79,2,61,0,54,0,45,0.99,CTC
+chr1,4043751,4043831,trf,12,6.2,12,72,20,63,0,52,0,47,1.00,CTCCTCTTCTTC
+chr1,4043885,4043925,trf,4,10.0,4,94,0,71,0,47,0,52,1.00,CCTT
+chr1,4047482,4047533,trf,10,5.3,10,82,13,63,39,0,60,0,0.97,GAGGAAGGAG
+chr1,4049725,4050081,trf,8,44.8,8,64,24,89,41,1,55,1,1.18,AGAGAGGG
+chr1,4049755,4049859,trf,10,8.9,13,69,23,56,39,0,59,0,1.04,GAGAGAGGGAGGA
+chr1,4052593,4052632,trf,1,39.0,1,89,0,60,94,0,5,0,0.29,A
+chr1,4064216,4067615,trf,4,867.8,4,64,13,967,26,40,4,27,1.75,TCAC
+chr1,4083922,4083948,trf,10,2.6,10,100,0,52,7,34,38,19,1.80,CCCTGGTGGA
+chr1,4099801,4100435,trf,7,92.7,7,74,21,480,51,0,0,47,1.05,TATATAA
+chr1,4099801,4100447,trf,9,71.9,9,75,19,520,51,0,0,47,1.06,TATATATAA
+chr1,4099801,4100448,trf,2,369.5,2,71,25,519,51,0,0,47,1.06,TA
+chr1,4133259,4133293,trf,11,3.1,11,100,0,68,11,26,52,8,1.67,AGGCCTGGGGC
+chr1,4144518,4144578,trf,3,20.3,3,75,3,50,35,38,0,26,1.57,ATC
+chr1,4144526,4144888,trf,9,41.7,9,69,13,107,32,42,1,23,1.64,CATCATCAC
+chr1,4144535,4144663,trf,6,22.0,6,81,7,68,34,48,0,17,1.47,CACCAT
+chr1,4144576,4144662,trf,3,29.7,3,80,6,61,34,53,0,11,1.37,CAC
+chr1,4144703,4144920,trf,12,18.1,12,66,9,66,32,40,2,25,1.68,ATCACCATCATC
+chr1,4144820,4144920,trf,6,16.7,6,70,8,51,32,39,2,27,1.68,ATCATC
+chr1,4146776,4146806,trf,2,15.0,2,92,0,51,46,50,3,0,1.18,CA
+chr1,4155076,4155106,trf,3,10.0,3,100,0,60,33,0,0,66,0.92,ATT
+chr1,4160610,4160645,trf,10,3.5,10,88,0,52,51,14,34,0,1.42,ACAGACAGAG
+chr1,4162728,4162822,trf,12,7.6,12,88,5,98,0,44,0,55,0.99,TTCTTTCCTTCC
+chr1,4162759,4162815,trf,4,14.0,4,100,0,112,0,50,0,50,1.00,TCCT
+chr1,4196099,4196125,trf,1,26.0,1,100,0,52,100,0,0,0,0.00,A
+chr1,4200933,4200967,trf,2,17.0,2,93,0,59,0,0,47,52,1.00,GT
+chr1,4211395,4211423,trf,1,28.0,1,100,0,56,100,0,0,0,0.00,A
+chr1,4214046,4214210,trf,4,40.5,4,76,13,106,2,56,0,40,1.12,CTTC
+chr1,4214193,4214251,trf,3,19.0,3,96,3,107,0,65,0,34,0.93,TCC
+chr1,4241126,4241155,trf,5,6.0,5,92,8,51,0,0,17,82,0.66,TTTTG
+chr1,4243450,4243475,trf,2,12.5,2,100,0,50,48,52,0,0,1.00,CA
+chr1,4264227,4264266,trf,2,19.5,2,100,0,78,0,0,48,51,1.00,TG
+chr1,4264344,4264388,trf,12,3.7,12,87,0,61,43,2,29,25,1.67,AGATAGATGAAT
+chr1,4274152,4274178,trf,2,13.0,2,100,0,52,0,50,0,50,1.00,CT
+chr1,4274175,4274245,trf,4,17.2,4,94,2,122,0,27,0,72,0.84,TCTT
+chr1,4277225,4277255,trf,2,15.0,2,92,0,51,3,0,50,46,1.18,GT
+chr1,4285156,4285200,trf,4,10.8,4,95,4,79,77,0,0,22,0.77,AAAT
+chr1,4287152,4287181,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,4295957,4296601,trf,4,160.8,4,75,12,450,26,46,0,26,1.55,CATC
+chr1,4302954,4302998,trf,5,8.8,5,97,0,61,11,20,6,61,1.52,TTCTA
+chr1,4302983,4303071,trf,5,17.6,5,89,4,115,1,34,20,44,1.59,GTTCC
+chr1,4303073,4303312,trf,5,47.8,5,88,1,156,20,47,2,29,1.64,ATTCC
+chr1,4304586,4304619,trf,2,16.5,2,100,0,66,0,0,51,48,1.00,GT
+chr1,4309542,4309573,trf,12,2.6,12,100,0,62,93,0,6,0,0.35,AAAAAAAAAAGA
+chr1,4312210,4312235,trf,10,2.5,10,100,0,50,8,0,52,40,1.31,GTGGTGTGTA
+chr1,4318356,4318487,trf,6,22.2,6,92,6,214,49,18,0,32,1.48,ATATAC
+chr1,4336500,4336780,trf,12,24.2,12,74,9,215,22,0,43,33,1.59,TGGTGATGATGA
+chr1,4336521,4336781,trf,9,28.3,9,75,5,189,23,0,43,33,1.59,TGATGGTGA
+chr1,4348516,4348557,trf,2,20.5,2,84,0,55,2,4,46,46,1.37,TG
+chr1,4352524,4352570,trf,12,4.0,12,83,11,60,86,0,13,0,0.56,AAAAGAAAAAAA
+chr1,4353533,4353565,trf,2,16.0,2,100,0,64,0,0,50,50,1.00,GT
+chr1,4357097,4357234,trf,2,68.5,2,74,8,100,46,0,46,5,1.32,AG
+chr1,4368909,4368956,trf,11,4.1,12,83,10,71,19,0,46,34,1.50,TGGTGATGGTGA
+chr1,4368909,4368956,trf,6,8.2,6,86,9,71,19,0,46,34,1.50,TGGTGA
+chr1,4369349,4369630,trf,9,31.3,9,67,14,107,25,1,41,31,1.66,GTGATGATG
+chr1,4369406,4369588,trf,3,61.7,3,65,11,72,28,0,38,32,1.61,TGA
+chr1,4372852,4372889,trf,12,3.0,13,80,15,51,24,62,0,13,1.31,TCCATCCACCCAC
+chr1,4373046,4373229,trf,8,22.4,8,72,10,66,27,52,1,18,1.55,CCATCCAC
+chr1,4373123,4373255,trf,12,11.3,12,76,9,94,26,55,0,17,1.47,CACCCATCCACC
+chr1,4373170,4373237,trf,4,16.8,4,87,6,91,25,55,0,19,1.43,CCAT
+chr1,4373948,4373979,trf,4,7.8,4,100,0,62,25,51,0,22,1.48,CCAT
+chr1,4376192,4376263,trf,5,15.0,5,80,14,80,0,19,1,78,0.82,TTTCT
+chr1,4379003,4379049,trf,3,15.0,3,86,4,56,60,0,39,0,0.97,AAG
+chr1,4379020,4379075,trf,12,4.5,12,83,2,65,47,0,52,0,1.00,AGAAGAAGGAGG
+chr1,4379026,4379072,trf,3,15.3,3,90,0,56,43,0,56,0,0.99,AGG
+chr1,4398515,4398566,trf,2,25.5,2,95,0,93,0,1,49,49,1.12,GT
+chr1,4414845,4414878,trf,4,8.2,4,93,0,57,72,0,0,27,0.85,AATA
+chr1,4420232,4420280,trf,2,24.0,2,100,0,96,0,0,50,50,1.00,GT
+chr1,4420279,4420379,trf,2,50.0,2,89,0,137,43,0,7,50,1.29,TA
+chr1,4427884,4427938,trf,12,4.5,12,78,0,54,38,35,9,16,1.81,TGCACACACACA
+chr1,4427923,4427998,trf,10,7.7,10,68,5,55,45,22,6,25,1.77,ACACATATAT
+chr1,4428028,4428087,trf,12,5.2,12,74,15,54,47,25,3,23,1.67,ACATATACACAT
+chr1,4429697,4429722,trf,12,2.1,12,100,0,50,0,24,16,60,1.36,TTTGCTTCTCTG
+chr1,4463137,4463162,trf,12,2.1,12,100,0,50,24,8,48,20,1.76,TCAGGTAGGAGG
+chr1,4467837,4467866,trf,5,5.8,5,100,0,58,17,0,0,82,0.66,TTTTA
+chr1,4471066,4471123,trf,10,4.9,12,76,16,50,36,33,17,12,1.87,GCACACACATGT
+chr1,4473055,4473086,trf,4,7.8,4,100,0,62,22,0,0,77,0.77,TTTA
+chr1,4496898,4496931,trf,2,16.5,2,93,0,57,0,48,0,51,1.00,CT
+chr1,4508575,4508611,trf,1,36.0,1,100,0,72,100,0,0,0,0.00,A
+chr1,4508837,4508870,trf,5,6.6,5,92,0,57,0,75,0,24,0.80,CTCCC
+chr1,4508868,4508932,trf,5,12.6,5,95,3,101,0,25,0,75,0.81,TCTTT
+chr1,4509104,4509135,trf,2,15.5,2,100,0,62,0,0,48,51,1.00,TG
+chr1,4515231,4515269,trf,11,3.5,11,100,0,76,23,31,26,18,1.97,CCCTGAGATAG
+chr1,4522725,4522931,trf,4,51.0,4,85,11,271,28,23,0,47,1.56,ATCT
+chr1,4522928,4522965,trf,2,18.5,2,100,0,74,0,48,0,51,1.00,TC
+chr1,4524720,4524759,trf,3,13.0,3,88,0,60,33,0,33,33,1.58,TGA
+chr1,4531703,4531755,trf,2,26.5,2,92,3,88,50,48,0,1,1.12,AC
+chr1,4538771,4538803,trf,4,8.0,4,100,0,64,25,0,25,50,1.50,ATTG
+chr1,4539843,4539870,trf,5,5.4,5,100,0,54,18,0,18,62,1.32,TTTAG
+chr1,4543679,4543908,trf,4,58.8,4,73,13,165,24,24,5,45,1.73,TCTA
+chr1,4544421,4544974,trf,6,93.5,6,67,16,172,55,12,29,2,1.49,AGAGAC
+chr1,4544423,4544974,trf,10,56.7,10,68,15,182,55,12,29,2,1.49,AGACAGAGAC
+chr1,4544437,4544902,trf,8,57.1,8,66,16,118,55,12,29,1,1.47,AGAGACAG
+chr1,4583042,4583073,trf,2,15.5,2,100,0,62,0,51,0,48,1.00,CT
+chr1,4583838,4583872,trf,2,17.0,2,100,0,68,50,0,0,50,1.00,AT
+chr1,4590141,4590168,trf,1,27.0,1,100,0,54,0,0,0,100,0.00,T
+chr1,4607039,4607074,trf,4,8.8,4,93,0,61,0,2,22,74,0.95,TTTG
+chr1,4618282,4618327,trf,9,5.0,9,84,10,56,20,0,0,80,0.72,TTTATTATT
+chr1,4620706,4620743,trf,5,7.6,5,96,3,67,83,0,0,16,0.64,AAAAT
+chr1,4629637,4629662,trf,4,6.2,4,100,0,50,24,24,0,52,1.48,TCAT
+chr1,4632533,4633446,trf,7,130.9,7,89,1,1195,38,44,16,0,1.51,CACAGCA
+chr1,4639231,4639263,trf,1,32.0,1,100,0,64,0,0,0,100,0.00,T
+chr1,4647041,4647589,trf,3,182.7,3,72,0,198,13,1,49,35,1.53,TGG
+chr1,4651882,4651919,trf,3,12.3,3,100,0,74,67,0,0,32,0.91,AAT
+chr1,4662046,4662080,trf,2,17.0,2,93,0,59,0,2,47,50,1.16,TG
+chr1,4668322,4668383,trf,2,31.0,2,80,3,70,0,6,47,45,1.28,TG
+chr1,4679808,4679852,trf,2,22.0,2,100,0,88,0,0,50,50,1.00,GT
+chr1,4682826,4682918,trf,6,15.3,6,77,13,73,16,1,45,36,1.54,TGGTGA
+chr1,4682835,4682926,trf,9,10.1,9,79,4,76,18,1,43,36,1.58,TGATGGTGA
+chr1,4687791,4687833,trf,8,5.2,8,80,11,50,26,38,0,35,1.57,CATCCATT
+chr1,4705395,4705429,trf,1,34.0,1,100,0,68,0,0,0,100,0.00,T
+chr1,4709208,4709285,trf,10,7.7,10,83,0,100,1,16,63,18,1.38,CTGGTGGGGG
+chr1,4709399,4709442,trf,10,4.3,10,90,0,68,6,16,53,23,1.67,TGGTGAGGCC
+chr1,4713154,4713180,trf,12,2.2,12,100,0,52,19,19,53,7,1.68,CATGGACGGGGG
+chr1,4716488,4716746,trf,9,28.8,9,75,3,153,26,0,42,30,1.59,TGGTGATGA
+chr1,4716491,4716801,trf,3,103.7,3,68,12,129,28,0,40,30,1.61,TGA
+chr1,4733422,4733448,trf,4,6.5,4,100,0,52,26,26,0,46,1.53,CATT
+chr1,4737257,4737283,trf,6,4.3,6,100,0,52,15,30,34,19,1.93,TGAGCC
+chr1,4737904,4737935,trf,6,5.2,6,100,0,62,67,32,0,0,0.91,AAAACC
+chr1,4743929,4743957,trf,9,3.1,9,100,0,56,10,42,25,21,1.85,GCTCTCCAG
+chr1,4744625,4744653,trf,2,14.0,2,100,0,56,50,50,0,0,1.00,CA
+chr1,4748747,4748774,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,4752146,4752214,trf,3,22.7,3,78,21,72,32,0,67,0,0.91,GGA
+chr1,4760193,4760374,trf,12,14.8,12,64,21,54,14,6,40,38,1.71,TGTGTGTGTGCA
+chr1,4760381,4760421,trf,12,3.2,12,92,7,62,15,15,27,42,1.86,TGTGTTCATGCA
+chr1,4762281,4762308,trf,12,2.2,12,100,0,54,22,29,22,25,1.99,CCTCAGGAATGT
+chr1,4763701,4763833,trf,8,15.9,8,68,16,72,1,58,2,37,1.20,TCTCTCCC
+chr1,4763887,4763924,trf,12,2.8,14,84,12,51,0,62,2,35,1.10,TCTCCCTCTCCTGC
+chr1,4767210,4767738,trf,12,43.1,12,65,11,149,32,37,1,28,1.67,ATCATCACCATC
+chr1,4767312,4767738,trf,6,70.8,6,67,7,94,32,38,0,27,1.63,CATCAC
+chr1,4767471,4767732,trf,9,30.1,9,72,7,146,32,39,0,27,1.57,ATCACCATC
+chr1,4778571,4778649,trf,2,39.5,2,89,2,113,0,51,1,47,1.09,TC
+chr1,4779320,4779351,trf,12,2.6,12,89,0,53,0,9,0,90,0.46,TTTTTTTCTTTT
+chr1,4780131,4780157,trf,1,26.0,1,100,0,52,100,0,0,0,0.00,A
+chr1,4780601,4780647,trf,7,5.9,8,82,12,60,0,13,0,86,0.56,TTTTTTTC
+chr1,4782565,4782603,trf,5,8.0,5,82,11,53,78,18,2,0,0.86,AAAAC
+chr1,4783471,4783544,trf,2,36.5,2,94,0,92,41,0,6,52,1.28,TA
+chr1,4789787,4789816,trf,5,5.8,5,100,0,58,0,0,17,82,0.66,TTTTG
+chr1,4790916,4790960,trf,6,7.5,6,94,5,81,0,0,15,84,0.63,TTTTTG
+chr1,4807634,4807659,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,4813308,4813348,trf,2,20.0,2,100,0,80,50,50,0,0,1.00,AC
+chr1,4823480,4823559,trf,10,7.9,10,78,15,76,37,10,11,40,1.75,TATATACGTA
+chr1,4823495,4823557,trf,12,5.5,12,72,14,51,38,9,11,40,1.74,ATATACACGTAT
+chr1,4835005,4835033,trf,2,14.0,2,100,0,56,0,50,0,50,1.00,CT
+chr1,4854989,4855040,trf,6,8.2,6,78,8,57,29,21,1,47,1.62,TATATC
+chr1,4868298,4868480,trf,12,14.8,12,66,14,52,2,49,2,45,1.31,CTCCTCCTCTTC
+chr1,4916049,4916097,trf,2,24.0,2,91,8,80,0,2,47,50,1.12,TG
+chr1,4932074,4932105,trf,2,15.5,2,100,0,62,48,0,0,51,1.00,TA
+chr1,4934237,4934277,trf,10,4.0,10,87,6,55,87,0,12,0,0.54,AAAAGAAAAA
+chr1,4943722,4943791,trf,4,17.5,4,96,3,131,49,0,26,24,1.51,GATA
+chr1,4950531,4950558,trf,5,5.4,5,100,0,54,81,0,0,18,0.69,AAAAT
+chr1,4959869,4959907,trf,12,3.3,12,82,14,53,31,0,68,0,0.90,GAAGGGGAGGGG
+chr1,4959869,4959991,trf,10,12.5,10,70,16,51,34,0,64,0,0.99,GAAGGGGAGG
+chr1,4959923,4959977,trf,5,10.8,5,79,0,63,27,1,70,0,0.98,GGAGG
+chr1,4964312,4964391,trf,10,7.8,10,80,2,86,0,43,3,53,1.19,TCTCTCTCTT
+chr1,4964312,4964391,trf,4,20.0,4,82,2,79,0,43,3,53,1.19,TCTC
+chr1,4964312,4964391,trf,6,13.3,6,79,2,79,0,43,3,53,1.19,TCTCTC
+chr1,4969137,4969253,trf,5,23.4,5,77,11,78,29,0,68,1,1.06,GGGAA
+chr1,4987867,4987915,trf,2,24.0,2,91,0,78,2,2,47,47,1.25,TG
+chr1,4996209,4996347,trf,4,33.8,4,88,4,195,0,26,0,73,0.84,TTTC
+chr1,5008231,5008276,trf,2,22.5,2,100,0,90,0,0,48,51,1.00,TG
+chr1,5008273,5008299,trf,4,6.5,4,100,0,52,0,23,26,50,1.50,TGTC
+chr1,5008757,5008789,trf,2,16.0,2,100,0,64,0,0,50,50,1.00,GT
+chr1,5008981,5009014,trf,4,8.2,4,93,0,57,27,0,48,24,1.51,GGAT
+chr1,5011412,5011465,trf,1,53.0,1,76,0,52,88,11,0,0,0.51,A
+chr1,5021602,5021637,trf,11,3.3,11,92,4,54,2,11,0,85,0.69,TTTCTTTCTTT
+chr1,5022498,5022535,trf,2,18.5,2,100,0,74,51,48,0,0,1.00,AC
+chr1,5024704,5024739,trf,4,8.8,4,100,0,70,77,0,0,22,0.78,AAAT
+chr1,5030621,5030718,trf,12,8.0,12,68,11,63,35,3,39,22,1.70,GATGGATGGATG
+chr1,5030621,5030718,trf,8,12.0,8,73,10,63,35,3,39,22,1.70,GATGGATG
+chr1,5030674,5030718,trf,4,11.0,4,80,0,52,31,2,43,22,1.66,GATG
+chr1,5037647,5037683,trf,2,18.0,2,94,0,63,0,47,2,50,1.15,TC
+chr1,5063293,5063319,trf,1,26.0,1,100,0,52,0,0,0,100,0.00,T
+chr1,5069497,5069550,trf,4,13.0,4,80,11,63,50,3,0,45,1.19,TTAA
+chr1,5072232,5072274,trf,4,11.0,4,90,10,70,0,0,23,76,0.79,GTTT
+chr1,5075383,5075868,trf,12,37.4,13,67,23,185,46,3,3,47,1.34,TATATATTATATA
+chr1,5075383,5075868,trf,2,265.5,2,61,24,130,46,3,3,47,1.34,TA
+chr1,5075392,5075854,trf,7,67.0,7,66,22,114,47,3,2,46,1.33,ATATATA
+chr1,5075434,5075641,trf,5,39.8,5,69,19,97,46,3,1,48,1.30,ATATT
+chr1,5075983,5076043,trf,10,6.1,10,72,1,50,43,10,3,43,1.54,ATATATCTAT
+chr1,5076093,5076152,trf,4,14.8,4,96,0,91,49,5,25,20,1.69,GATA
+chr1,5079850,5079882,trf,5,6.2,5,92,7,55,0,18,0,81,0.70,TTTTC
+chr1,5083674,5083750,trf,2,38.0,2,82,10,84,0,44,6,48,1.28,TC
+chr1,5086325,5086361,trf,2,18.0,2,88,0,54,50,44,2,2,1.31,AC
+chr1,5088745,5088796,trf,9,5.7,9,79,9,59,47,3,5,43,1.46,ATATATGAT
+chr1,5097409,5097443,trf,11,3.1,11,86,0,50,88,2,0,8,0.62,TAAAAAAAAAA
+chr1,5112299,5112520,trf,12,18.8,12,86,3,281,36,4,58,0,1.22,GAGGGAGAGGCA
+chr1,5131714,5131744,trf,2,15.0,2,92,0,51,0,53,0,46,1.00,TC
+chr1,5131715,5131755,trf,10,4.0,10,90,0,53,0,57,0,42,0.98,CTCTCTCTCC
+chr1,5137021,5137193,trf,8,21.5,8,89,0,254,12,69,1,16,1.24,CACTCCCC
+chr1,5146791,5146852,trf,4,15.2,4,73,13,54,24,24,3,47,1.67,ATTC
+chr1,5158780,5158823,trf,2,21.5,2,90,0,68,46,48,4,0,1.22,AC
+chr1,5159202,5159253,trf,2,25.5,2,93,0,84,52,45,0,1,1.12,AC
+chr1,5160176,5160319,trf,6,22.8,6,71,20,91,50,35,0,13,1.47,ACACAT
+chr1,5175477,5175560,trf,1,83.0,1,70,0,58,2,9,2,85,0.78,T
+chr1,5188234,5188269,trf,3,11.7,3,87,0,52,40,0,60,0,0.97,GAG
+chr1,5195657,5195691,trf,10,3.3,10,92,8,59,0,11,0,88,0.52,TTTCTTTTTT
+chr1,5212091,5212131,trf,4,9.8,4,83,5,53,55,0,42,2,1.13,GAAG
+chr1,5212235,5212287,trf,4,13.2,4,89,4,79,48,0,51,0,1.00,GGAA
+chr1,5212365,5212415,trf,4,12.0,4,87,4,64,72,0,4,24,1.02,TAAA
+chr1,5214469,5214816,trf,2,180.5,2,80,8,229,47,11,0,40,1.42,AT
+chr1,5222279,5222313,trf,12,2.8,12,87,12,52,0,44,0,55,0.99,CCTTCCTTCTTT
+chr1,5225233,5225330,trf,10,9.7,10,97,0,185,0,58,0,41,0.98,CTCTCTCCCT
+chr1,5227622,5227671,trf,5,9.8,5,100,0,98,20,0,0,79,0.73,TTTAT
+chr1,5246028,5246274,trf,4,58.5,4,72,10,89,0,58,0,41,1.01,CTCC
+chr1,5246049,5246711,trf,12,56.2,12,69,13,333,0,54,0,43,1.11,TTCCTTCCTTCC
+chr1,5246049,5246711,trf,8,84.4,8,72,13,333,0,54,0,43,1.11,TTCCTTCC
+chr1,5246271,5246711,trf,4,111.2,4,75,13,207,1,53,1,44,1.15,CCTT
+chr1,5249031,5249072,trf,2,20.5,2,100,0,82,0,0,48,51,1.00,TG
+chr1,5253548,5253606,trf,8,6.6,9,76,20,52,22,1,1,74,1.01,ATTTTATTT
+chr1,5276670,5276700,trf,2,15.0,2,92,0,51,0,46,0,53,1.00,TC
+chr1,5276699,5276737,trf,2,19.0,2,100,0,76,50,50,0,0,1.00,CA
+chr1,5279125,5279166,trf,2,20.5,2,89,0,64,0,2,46,51,1.14,TG
+chr1,5279516,5279557,trf,5,8.4,5,89,5,57,0,0,14,85,0.60,TGTTT
+chr1,5282595,5282623,trf,8,3.5,8,100,0,56,0,10,53,35,1.36,TGGGTCTG
+chr1,5289621,5290101,trf,4,121.8,4,75,2,425,28,2,42,26,1.69,ATGG
+chr1,5290803,5290967,trf,4,42.0,4,78,11,171,26,0,48,25,1.52,ATGG
+chr1,5303085,5303157,trf,4,18.0,4,94,0,126,48,0,25,26,1.51,GATA
+chr1,5306412,5306446,trf,5,7.0,5,93,6,61,0,0,20,79,0.73,TGTTT
+chr1,5308037,5308084,trf,1,47.0,1,86,0,67,93,2,4,0,0.40,A
+chr1,5315195,5315589,trf,4,97.5,4,79,9,239,63,0,35,0,1.02,AAGA
+chr1,5320006,5320158,trf,2,78.0,2,70,5,69,42,4,7,44,1.54,AT
+chr1,5333859,5333890,trf,4,8.0,4,92,7,55,25,22,0,51,1.48,ATTC
+chr1,5353185,5353225,trf,10,4.0,11,81,18,52,0,0,20,80,0.72,GTTTGTTGTTT
+chr1,5386831,5387177,trf,11,29.9,11,75,16,267,5,1,48,44,1.34,TGTGTGTGTGG
+chr1,5386831,5387185,trf,2,186.0,2,73,14,304,5,1,48,44,1.34,TG
+chr1,5386831,5387786,trf,12,78.6,12,70,12,269,4,11,35,48,1.60,TGTGTGTGTGTC
+chr1,5387195,5387671,trf,6,76.8,6,65,12,113,4,17,29,48,1.66,TGTCTG
+chr1,5387596,5387669,trf,2,36.5,2,77,0,56,1,10,35,52,1.46,TG
+chr1,5391939,5391964,trf,2,12.5,2,100,0,50,48,52,0,0,1.00,CA
+chr1,5394638,5394688,trf,12,4.0,13,74,10,50,48,0,50,2,1.12,AGAGAGAAGGAAG
+chr1,5394680,5394768,trf,4,21.8,4,79,6,88,52,0,47,0,1.00,GAAG
+chr1,5394769,5394821,trf,4,13.0,4,81,0,59,26,1,67,3,1.18,GGAG
+chr1,5399146,5399411,trf,4,66.2,4,70,10,166,29,1,45,23,1.60,GATG
+chr1,5399419,5399480,trf,12,5.1,12,76,6,61,31,0,39,29,1.57,GATAGATGGATG
+chr1,5406292,5406973,trf,4,183.2,4,72,17,447,47,2,25,24,1.64,AGAT
+chr1,5416031,5416176,trf,4,37.0,4,79,12,59,0,35,0,64,0.94,CCTT
+chr1,5416031,5416177,trf,8,18.6,8,75,14,99,0,35,0,64,0.94,CCTTTCTT
+chr1,5426371,5426412,trf,1,41.0,1,85,0,55,0,7,0,92,0.38,T
+chr1,5456897,5456924,trf,4,6.8,4,100,0,54,25,0,0,74,0.83,ATTT
+chr1,5458338,5458575,trf,4,59.8,4,69,14,107,0,49,0,49,1.07,CCTT
+chr1,5471342,5471383,trf,2,20.5,2,89,0,64,53,46,0,0,1.00,CA
+chr1,5488209,5488411,trf,4,52.0,4,68,7,94,26,39,2,31,1.70,TCCA
+chr1,5490700,5490753,trf,2,26.0,2,76,3,52,47,43,3,5,1.45,CA
+chr1,5499290,5499787,trf,4,129.8,4,80,14,559,47,1,25,25,1.61,ATAG
+chr1,5500675,5500779,trf,10,10.8,10,71,17,78,5,14,45,34,1.69,GTGTGTGCAT
+chr1,5509815,5509845,trf,7,4.3,7,100,0,60,26,0,73,0,0.84,GGAGGAG
+chr1,5516540,5516593,trf,2,27.0,2,96,3,99,50,49,0,0,1.00,CA
+chr1,5557318,5557344,trf,12,2.2,12,100,0,52,30,30,19,19,1.96,GTCATACAGCCA
+chr1,5557752,5557778,trf,1,26.0,1,100,0,52,0,0,0,100,0.00,T
+chr1,5561861,5561888,trf,3,9.0,3,100,0,54,0,0,66,33,0.92,TGG
+chr1,5563366,5563394,trf,4,7.0,4,100,0,56,75,0,25,0,0.81,AAAG
+chr1,5573259,5573300,trf,6,6.7,6,91,8,57,0,0,12,87,0.53,TTTTGT
+chr1,5573262,5573301,trf,7,5.9,7,93,6,64,0,0,12,87,0.55,TTTTTTG
+chr1,5578072,5578101,trf,10,2.9,10,100,0,58,0,0,58,41,0.98,TGTGTGTGGG
+chr1,5578124,5578157,trf,4,8.2,4,87,12,50,0,27,24,48,1.51,TGTC
+chr1,5578125,5578162,trf,12,3.0,13,80,15,51,0,32,21,45,1.52,GTCTGTCTGTCTC
+chr1,5582793,5582853,trf,2,30.0,2,86,0,84,0,43,6,50,1.28,CT
+chr1,5584075,5584110,trf,1,35.0,1,94,0,61,97,2,0,0,0.19,A
+chr1,5592009,5592048,trf,2,19.5,2,89,0,60,51,43,0,5,1.24,AC
+chr1,5596447,5596476,trf,1,29.0,1,100,0,58,100,0,0,0,0.00,A
+chr1,5603295,5604518,trf,2,588.5,2,70,12,675,8,41,1,49,1.42,CT
+chr1,5605461,5605503,trf,8,5.9,7,78,15,50,0,2,19,78,0.86,GTTTTTT
+chr1,5609354,5609379,trf,2,12.5,2,100,0,50,52,48,0,0,1.00,AC
+chr1,5620231,5620256,trf,12,2.1,12,100,0,50,16,68,8,8,1.38,CTCCCCCAGACC
+chr1,5634042,5634091,trf,10,4.9,10,94,0,80,8,12,38,40,1.72,TGTGTGTGCA
+chr1,5652991,5653060,trf,2,35.5,2,82,5,88,49,2,46,1,1.25,AG
+chr1,5655815,5655934,trf,8,14.9,8,86,3,69,49,1,47,0,1.17,AGGAAGGC
+chr1,5655838,5655993,trf,4,38.2,4,84,7,188,54,0,44,0,1.09,AAGG
+chr1,5656130,5656289,trf,8,18.8,9,67,26,55,39,0,58,1,1.09,AGGAAGGAG
+chr1,5656183,5656269,trf,4,21.0,4,79,9,84,33,0,66,0,0.92,GGGA
+chr1,5674661,5674690,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,5678725,5679275,trf,4,137.2,4,69,13,303,30,1,44,24,1.62,ATGG
+chr1,5688386,5688418,trf,2,16.0,2,100,0,64,0,0,50,50,1.00,TG
+chr1,5691865,5691934,trf,12,5.5,12,74,16,68,17,62,2,17,1.45,CCCACCTCACTC
+chr1,5695977,5696040,trf,4,16.2,4,93,6,112,49,0,25,25,1.51,AGAT
+chr1,5701709,5701830,trf,8,15.2,8,75,14,90,64,0,34,0,1.00,AGAAAGAG
+chr1,5701724,5701827,trf,4,25.5,4,76,9,93,66,0,32,0,0.98,GAAA
+chr1,5701828,5701913,trf,4,21.2,4,92,0,134,48,0,51,0,1.00,AGGA
+chr1,5702710,5702738,trf,1,28.0,1,100,0,56,0,0,0,100,0.00,T
+chr1,5710670,5710850,trf,4,44.8,4,72,17,97,42,1,54,1,1.20,GAAG
+chr1,5722401,5722457,trf,2,28.0,2,96,0,103,50,1,0,48,1.11,AT
+chr1,5730491,5730524,trf,4,8.2,4,100,0,66,24,0,48,27,1.51,TGAG
+chr1,5730521,5730552,trf,4,7.8,4,100,0,62,25,22,25,25,2.00,AGTC
+chr1,5736192,5736252,trf,4,15.0,4,89,0,93,51,0,48,0,1.00,GAAG
+chr1,5736292,5736338,trf,4,11.5,4,86,9,58,21,0,54,23,1.45,GATG
+chr1,5736339,5736477,trf,4,34.8,4,87,7,102,47,8,18,24,1.77,AGAT
+chr1,5737020,5737478,trf,11,40.9,11,70,12,256,31,1,42,25,1.64,TGGATGGATGA
+chr1,5737020,5737482,trf,4,123.5,4,68,13,243,30,1,42,25,1.64,TGGA
+chr1,5737624,5737885,trf,4,68.5,4,70,12,165,27,1,42,28,1.63,TGGA
+chr1,5737632,5737870,trf,11,21.5,11,70,14,118,28,1,42,28,1.64,GGATGGATGAT
+chr1,5737737,5737813,trf,7,10.9,7,77,16,68,34,1,35,28,1.66,ATGGATA
+chr1,5738022,5738102,trf,4,21.2,4,76,12,71,25,3,46,25,1.69,TGGA
+chr1,5738035,5738130,trf,11,8.8,11,74,13,74,26,4,45,24,1.71,GATGATGGATG
+chr1,5744091,5744324,trf,4,58.2,4,86,0,259,0,64,0,35,0.94,TCCC
+chr1,5744762,5744923,trf,8,20.9,8,68,16,54,52,31,13,3,1.55,ACACACAG
+chr1,5744770,5744927,trf,12,13.6,12,72,11,96,51,31,13,3,1.56,ACACACAGACAC
+chr1,5746659,5746686,trf,9,3.0,9,100,0,54,11,44,22,22,1.84,GGCTTCCCA
+chr1,5747518,5747925,trf,8,54.7,7,67,19,132,37,1,60,0,1.10,AGGGAGG
+chr1,5747594,5747925,trf,4,84.2,4,70,13,161,37,0,61,0,1.05,AGGG
+chr1,5749586,5749838,trf,8,30.5,8,68,15,93,50,14,32,1,1.54,GAGACAGA
+chr1,5749618,5749848,trf,10,23.4,10,71,7,121,51,15,31,1,1.53,GAGAGACACA
+chr1,5749735,5749830,trf,12,8.8,12,70,21,66,50,13,32,3,1.57,ACAGAGAGAGAT
+chr1,5749958,5750009,trf,10,4.9,10,75,17,50,49,13,35,1,1.54,AGACAGAGAC
+chr1,5750545,5750601,trf,4,14.0,4,84,0,76,0,28,21,50,1.49,TCTG
+chr1,5757894,5757930,trf,2,18.0,2,91,0,54,52,44,0,2,1.15,CA
+chr1,5767903,5767966,trf,10,6.7,9,72,27,51,17,55,11,15,1.68,ACACCTGCC
+chr1,5767907,5767959,trf,9,5.6,9,75,24,54,13,55,13,17,1.69,CTGCCACCT
+chr1,5767930,5767973,trf,12,4.0,12,72,27,51,16,58,9,16,1.63,CACCTCTGCCCA
+chr1,5770589,5770618,trf,1,29.0,1,100,0,58,100,0,0,0,0.00,A
+chr1,5773324,5773372,trf,4,12.0,4,100,0,96,75,0,0,25,0.81,AAAT
+chr1,5777156,5777194,trf,1,38.0,1,100,0,76,100,0,0,0,0.00,A
+chr1,5802783,5802901,trf,12,9.6,12,77,5,128,33,38,2,26,1.70,CCATCATCATCA
+chr1,5802787,5802901,trf,9,12.7,9,71,14,74,33,37,2,26,1.70,CATCATCAC
+chr1,5803252,5803292,trf,2,20.0,2,89,0,62,55,45,0,0,0.99,AC
+chr1,5804351,5804517,trf,4,41.0,4,69,11,61,24,43,2,29,1.67,CCAT
+chr1,5806171,5806204,trf,2,16.5,2,100,0,66,51,48,0,0,1.00,AC
+chr1,5809133,5809185,trf,11,5.2,11,71,21,51,30,44,7,17,1.77,CACATGCCACT
+chr1,5813607,5813755,trf,3,48.3,3,82,4,179,35,4,59,1,1.25,GGA
+chr1,5821297,5821329,trf,9,3.7,9,95,4,57,68,0,31,0,0.90,AGAAAGGAA
+chr1,5821342,5821384,trf,4,10.5,4,94,0,75,28,0,71,0,0.86,GAGG
+chr1,5821342,5821424,trf,12,6.8,12,95,0,92,39,0,60,0,0.96,GAGGGAAGGAAG
+chr1,5821345,5821420,trf,8,9.4,8,97,0,87,38,0,61,0,0.96,GGAGGGAA
+chr1,5821373,5821478,trf,4,26.0,4,83,9,97,52,0,47,0,1.00,GGAA
+chr1,5821381,5821491,trf,12,8.8,12,75,9,76,54,0,44,0,1.06,GGAAGGAAAGAA
+chr1,5825868,5825906,trf,5,7.4,5,85,14,51,78,0,0,21,0.74,AATAA
+chr1,5829605,5829874,trf,12,22.2,12,70,8,150,18,1,46,33,1.58,TGGTGATGGTGA
+chr1,5831469,5831497,trf,12,2.3,12,100,0,56,17,53,14,14,1.73,CCACCGTCACTG
+chr1,5832248,5832358,trf,7,15.7,7,78,0,112,9,14,60,16,1.59,GCTGGGG
+chr1,5868715,5869269,trf,10,47.8,12,66,21,142,35,43,9,10,1.73,CACACATGCACC
+chr1,5868761,5869249,trf,10,47.2,10,69,20,210,36,44,9,10,1.71,CATGCACACA
+chr1,5869015,5869137,trf,8,15.9,8,63,14,51,34,42,11,11,1.77,CACACATG
+chr1,5869322,5869385,trf,12,5.5,12,75,9,60,39,46,7,6,1.59,ACACACACATGC
+chr1,5876222,5876252,trf,4,7.5,4,92,0,51,26,0,73,0,0.84,GGGA
+chr1,5879777,5879892,trf,4,28.8,4,74,0,104,46,44,8,0,1.40,CACA
+chr1,5880007,5880041,trf,12,2.8,12,90,0,59,41,44,8,5,1.60,CACACACACATG
+chr1,5912537,5912580,trf,7,6.4,7,94,2,63,88,0,9,2,0.60,AAAAAAG
+chr1,5914257,5914286,trf,1,29.0,1,100,0,58,100,0,0,0,0.00,A
+chr1,5915202,5915232,trf,7,4.3,7,100,0,60,0,26,46,26,1.53,GGCCTTG
+chr1,5931733,5931758,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,5941289,5941314,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,5949343,5949370,trf,2,13.5,2,100,0,54,51,48,0,0,1.00,AC
+chr1,5952554,5952626,trf,10,7.2,10,73,17,69,13,70,5,9,1.31,CCCTGCCCCA
+chr1,5964843,5964942,trf,2,51.5,2,79,11,82,49,5,1,44,1.31,TA
+chr1,5991921,5991958,trf,7,5.3,7,100,0,74,16,16,67,0,1.23,CAGGGGG
+chr1,6001296,6001357,trf,2,31.0,2,88,3,79,45,49,1,3,1.28,CA
+chr1,6007500,6007538,trf,11,3.5,11,88,0,58,2,57,21,18,1.52,GCGCCTCCTCT
+chr1,6012108,6012698,trf,12,45.3,12,67,16,231,20,2,58,18,1.50,GGTGGAGGTGGA
+chr1,6015016,6015049,trf,1,33.0,1,93,0,57,0,0,3,96,0.20,T
+chr1,6017406,6017439,trf,2,16.5,2,100,0,66,0,0,48,51,1.00,TG
+chr1,6027219,6027274,trf,2,27.5,2,100,0,110,0,0,50,49,1.00,GT
+chr1,6030448,6030902,trf,8,56.1,8,67,22,170,14,1,36,46,1.57,GTGTATGT
+chr1,6030496,6030902,trf,10,40.2,10,72,16,232,15,1,35,47,1.54,TGTGTGTATG
+chr1,6033195,6033451,trf,12,20.2,12,65,20,67,8,10,42,38,1.70,TGTGCGTGTGTG
+chr1,6040350,6040383,trf,4,8.5,4,86,6,50,0,27,24,48,1.51,TGTC
+chr1,6088703,6088732,trf,3,9.7,3,100,0,58,68,0,0,31,0.89,AAT
+chr1,6106793,6108937,trf,8,254.8,8,67,17,598,30,1,52,14,1.50,GGAGGGAT
+chr1,6106990,6108585,trf,11,155.1,11,65,22,418,31,1,51,15,1.51,GATGGAGGGAT
+chr1,6119718,6119828,trf,12,8.8,12,75,7,85,34,15,16,33,1.90,ATATATACGTAC
+chr1,6119783,6119834,trf,12,4.2,12,87,0,57,35,11,13,39,1.82,TATATACGTATA
+chr1,6132880,6132910,trf,2,15.0,2,100,0,60,0,50,0,50,1.00,TC
+chr1,6139218,6139251,trf,3,11.3,3,93,6,59,0,0,30,69,0.88,TGT
+chr1,6140967,6141001,trf,3,11.3,3,100,0,68,67,0,0,32,0.91,AAT
+chr1,6141289,6141326,trf,3,12.0,3,94,5,65,64,0,0,35,0.94,AAT
+chr1,6149645,6149747,trf,8,12.5,8,69,12,55,38,2,36,22,1.70,GATGAATG
+chr1,6149658,6150610,trf,4,240.5,4,68,7,386,34,4,40,21,1.73,ATGG
+chr1,6150562,6150610,trf,7,6.4,7,79,11,51,29,2,43,25,1.66,GATGATG
+chr1,6153827,6153856,trf,5,5.8,5,100,0,58,79,20,0,0,0.74,CAAAA
+chr1,6155876,6155906,trf,8,3.8,8,95,0,51,13,60,23,3,1.48,AGCCCCGC
+chr1,6159227,6159259,trf,2,16.0,2,100,0,64,50,50,0,0,1.00,CA
+chr1,6174390,6175615,trf,4,320.8,4,71,13,789,25,2,47,25,1.63,ATGG
+chr1,6175681,6175727,trf,4,11.5,4,95,0,65,26,6,47,19,1.73,ATGG
+chr1,6202748,6202775,trf,1,27.0,1,100,0,54,0,0,0,100,0.00,T
+chr1,6229783,6229824,trf,2,20.5,2,100,0,82,51,48,0,0,1.00,AC
+chr1,6235680,6235711,trf,10,3.1,10,100,0,62,0,70,29,0,0.87,CCCCGCCGGC
+chr1,6240862,6240890,trf,1,28.0,1,100,0,56,0,0,0,100,0.00,T
+chr1,6244972,6245081,trf,5,21.8,5,73,14,75,1,70,0,27,0.97,TCCCC
+chr1,6255642,6255670,trf,1,28.0,1,100,0,56,0,0,0,100,0.00,T
+chr1,6267461,6267487,trf,4,6.5,4,100,0,52,0,46,26,26,1.53,TGCC
+chr1,6275716,6275741,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,6292661,6292696,trf,11,3.3,11,84,8,54,0,0,11,88,0.51,TTTGTTTTTTT
+chr1,6299665,6299691,trf,2,13.0,2,100,0,52,0,0,50,50,1.00,GT
+chr1,6315753,6315779,trf,1,26.0,1,100,0,52,100,0,0,0,0.00,A
+chr1,6323737,6323770,trf,2,16.5,2,100,0,66,51,0,0,48,1.00,AT
+chr1,6330053,6330088,trf,2,18.0,2,88,5,54,0,2,51,45,1.16,GT
+chr1,6332820,6332852,trf,10,3.3,10,91,8,57,90,9,0,0,0.45,AAAAAAACAA
+chr1,6332820,6332852,trf,9,3.4,9,95,4,55,90,9,0,0,0.45,AAAAAAACA
+chr1,6333703,6333735,trf,8,4.1,8,92,8,57,25,62,12,0,1.30,GCCCCCAA
+chr1,6335327,6335352,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,6336333,6336358,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,6344763,6344795,trf,1,32.0,1,93,0,55,96,0,3,0,0.20,A
+chr1,6354603,6354655,trf,12,5.0,11,72,27,51,9,46,19,25,1.80,TGGCCTCTCAC
+chr1,6356391,6356473,trf,9,8.7,9,72,25,55,18,54,15,10,1.69,CTCAGCCCG
+chr1,6364846,6364873,trf,1,27.0,1,100,0,54,100,0,0,0,0.00,A
+chr1,6368804,6368845,trf,12,3.4,12,93,0,64,9,43,21,24,1.83,CTGCTGCCACTG
+chr1,6370457,6370506,trf,3,16.3,3,100,0,98,32,0,0,67,0.91,TAT
+chr1,6378067,6378097,trf,4,7.5,4,100,0,60,76,23,0,0,0.78,AAAC
+chr1,6399636,6399674,trf,11,3.6,11,82,13,53,42,13,0,44,1.43,CTTTAAACTAT
+chr1,6404707,6404758,trf,4,12.8,4,100,0,102,76,0,0,23,0.79,AAAT
+chr1,6410005,6410035,trf,1,30.0,1,100,0,60,0,0,0,100,0.00,T
+chr1,6413949,6413981,trf,5,6.4,5,100,0,64,0,0,21,78,0.76,TGTTT
+chr1,6431628,6431653,trf,1,25.0,1,100,0,50,100,0,0,0,0.00,A
+chr1,6431663,6431705,trf,9,4.8,9,82,2,50,71,0,28,0,0.86,AAAGAAAGA
+chr1,6436482,6436520,trf,4,9.5,4,100,0,76,23,0,0,76,0.79,TTAT
+chr1,6463725,6463753,trf,1,28.0,1,100,0,56,100,0,0,0,0.00,A
+chr1,6463929,6463974,trf,7,5.9,7,80,19,54,42,0,4,53,1.21,TATTTAA
+chr1,6469122,6469175,trf,3,17.7,3,88,0,79,1,60,1,35,1.19,TCC
+chr1,6475182,6475286,trf,12,8.5,12,88,4,145,9,68,0,21,1.24,CCCTCCTTCCCA
+chr1,6481524,6481579,trf,4,13.8,4,92,0,92,72,0,1,25,0.94,AAAT
+chr1,6482691,6482721,trf,12,2.5,12,94,0,51,23,0,6,70,1.11,TTATGTATTTAT
+chr1,6494118,6494148,trf,1,30.0,1,100,0,60,0,0,0,100,0.00,T
+chr1,6516723,6516875,trf,12,13.6,12,70,14,101,28,0,21,50,1.49,TATATATGTGTG
+chr1,6516786,6516906,trf,2,60.0,2,88,0,69,35,1,14,48,1.54,TA
+chr1,6529590,6529637,trf,12,3.5,13,91,8,69,80,0,0,19,0.70,AAAAAATAAAAAT
+chr1,6529590,6529637,trf,7,7.0,7,79,16,55,80,0,0,19,0.70,AAAAAAT
+chr1,6536345,6536381,trf,5,7.6,5,87,12,58,83,0,0,16,0.65,AAATA
+chr1,6548138,6548163,trf,1,25.0,1,100,0,50,0,0,0,100,0.00,T
+chr1,6549265,6549291,trf,4,6.5,4,100,0,52,53,46,0,0,1.00,AACC
+chr1,6556385,6556410,trf,4,6.2,4,100,0,50,24,24,0,52,1.48,TCTA
+chr1,6569996,6570051,trf,10,5.2,11,82,10,53,38,0,61,0,0.96,AGGGAGGAGAG
+chr1,6570024,6570051,trf,2,13.5,2,100,0,54,48,0,51,0,1.00,GA
+chr1,6573652,6573679,trf,6,4.5,6,100,0,54,14,0,0,85,0.61,TTTATT
+chr1,6586899,6586925,trf,9,2.9,9,100,0,52,0,53,11,34,1.37,CCTGCCTTC
+chr1,6608523,6608554,trf,7,4.6,7,92,8,55,87,12,0,0,0.55,AAAAAAC
+chr1,6609124,6609185,trf,8,8.6,7,87,8,72,83,0,0,16,0.64,AAAAATA
+chr1,6609141,6609183,trf,4,11.0,4,90,10,70,78,0,0,21,0.75,TAAA
+chr1,6613201,6613226,trf,7,3.6,7,100,0,50,16,16,68,0,1.22,AGCGGGG
+chr1,6617046,6617075,trf,12,2.3,13,94,5,51,48,13,17,20,1.81,AAAACTCTGGTAG
+chr1,6620581,6620606,trf,12,2.1,12,100,0,50,32,24,28,16,1.96,GTAAGCATCCAG
+chr1,6641406,6641433,trf,2,13.5,2,100,0,54,51,48,0,0,1.00,AC
+chr1,6649932,6649958,trf,10,2.6,10,100,0,52,23,11,19,46,1.82,TGTACATGTT
+chr1,6662118,6662149,trf,7,4.6,7,92,8,55,0,0,12,87,0.55,TTGTTTT
+chr1,6669513,6669577,trf,5,12.8,5,100,0,128,79,0,20,0,0.73,AGAAA
+chr1,6686239,6686265,trf,11,2.4,11,100,0,52,53,7,11,26,1.63,GAATAACTTAA
+chr1,6695627,6695658,trf,1,31.0,1,100,0,62,100,0,0,0,0.00,A
+chr1,6698932,6698971,trf,10,3.9,10,82,0,51,51,0,0,48,1.00,ATATATATAA
+chr1,6703837,6703868,trf,7,4.6,7,96,4,55,0,9,0,90,0.46,TTTTTTC
+chr1,6708960,6709001,trf,2,20.5,2,100,0,82,0,48,0,51,1.00,TC
+chr1,6716267,6716332,trf,6,11.2,6,73,6,62,27,6,63,3,1.33,GAGAGG
+chr1,6719725,6719753,trf,1,28.0,1,100,0,56,100,0,0,0,0.00,A
+chr1,6723051,6723076,trf,1,25.0,1,100,0,50,0,0,0,100,0.00,T
+chr1,6728817,6729075,trf,2,128.0,2,76,1,75,40,9,9,40,1.70,AT
+chr1,6732366,6732447,trf,4,19.8,4,98,1,144,0,23,0,76,0.79,TTTC
+chr1,6733190,6733220,trf,2,15.0,2,100,0,60,50,50,0,0,1.00,CA
+chr1,6733599,6733628,trf,1,29.0,1,100,0,58,0,0,0,100,0.00,T
+chr1,6735643,6735687,trf,1,44.0,1,86,0,61,93,0,6,0,0.36,A
+chr1,6736252,6736304,trf,4,11.2,5,86,10,51,0,13,0,86,0.57,TCTTT
+chr1,6736254,6736305,trf,9,5.1,10,84,11,61,0,11,0,88,0.52,TTTTCTTTTT
+chr1,6739034,6739188,trf,4,38.5,4,80,0,128,38,49,11,0,1.44,CACA
+chr1,6740541,6740585,trf,2,22.0,2,100,0,88,0,0,50,50,1.00,TG
+chr1,6742487,6742518,trf,12,2.6,12,94,0,53,58,0,0,41,0.98,ATATAAATATAT
+chr1,6742542,6742774,trf,2,126.0,2,65,18,103,45,1,1,51,1.17,TA
+chr1,6748676,6748729,trf,3,17.7,3,80,7,54,0,58,0,41,0.98,CTC
+chr1,6749404,6749491,trf,9,10.1,9,71,12,58,0,43,2,54,1.13,TCCTTCTTC
+chr1,6751740,6751787,trf,2,23.5,2,95,0,85,0,2,46,51,1.13,TG
+chr1,6763384,6763423,trf,5,7.8,5,86,8,53,0,20,0,79,0.73,TTTTC
+chr1,6770093,6770125,trf,1,32.0,1,100,0,64,100,0,0,0,0.00,A
+chr1,6777435,6777469,trf,10,3.4,10,92,8,52,88,11,0,0,0.52,AAAACAAAAA
+chr1,6777984,6778011,trf,12,2.2,12,100,0,54,18,18,48,14,1.82,CAGGCTGGAGTG
+chr1,6782902,6782944,trf,12,3.4,12,84,15,59,83,16,0,0,0.65,AAAAAACAAAAC
+chr1,6782903,6782946,trf,11,3.6,11,79,14,50,81,18,0,0,0.69,AAAAACAAAAC
+chr1,6788158,6788184,trf,4,6.5,4,100,0,52,0,73,0,26,0.84,CTCC
+chr1,6790375,6790409,trf,2,17.0,2,100,0,68,0,0,50,50,1.00,GT
+chr1,6793066,6793091,trf,11,2.3,11,100,0,50,32,12,0,56,1.36,TCTTATATATA
+chr1,6794882,6794921,trf,8,4.8,8,96,3,69,0,0,10,89,0.48,TTTTTTTG
+chr1,6796132,6796158,trf,1,26.0,1,100,0,52,0,0,0,100,0.00,T
+chr1,6822794,6822845,trf,2,25.5,2,91,0,84,49,49,1,0,1.12,CA
+chr1,6836572,6836602,trf,10,3.0,10,100,0,60,10,0,40,50,1.36,ATGTGTGTGT
+chr1,6839380,6839408,trf,7,4.0,7,100,0,56,85,14,0,0,0.59,AAAAAAC
+chr1,6858433,6858472,trf,3,13.0,3,89,10,62,0,0,64,35,0.94,GTG
+chr1,6868319,6868353,trf,5,6.8,5,100,0,68,82,17,0,0,0.67,AAAAC
+chr1,6872227,6872263,trf,3,12.0,3,93,0,63,33,63,0,2,1.08,CAC
+chr1,6883434,6883462,trf,10,2.8,10,100,0,56,28,10,60,0,1.30,AGGGCAGGAG
+chr1,6884291,6884336,trf,2,22.5,2,100,0,90,51,48,0,0,1.00,AC
+chr1,6899554,6899594,trf,2,20.0,2,100,0,80,50,50,0,0,1.00,CA
+chr1,6902039,6902073,trf,2,17.0,2,100,0,68,50,50,0,0,1.00,CA
+chr1,6904733,6904765,trf,1,32.0,1,100,0,64,0,0,0,100,0.00,T