Commit
•
cc85b12
1
Parent(s):
03908b9
Update README.md
Browse files
README.md
CHANGED
@@ -1,3 +1,100 @@
|
|
1 |
---
|
2 |
license: mit
|
3 |
---
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
1 |
---
|
2 |
license: mit
|
3 |
---
|
4 |
+
|
5 |
+
# Dataset Card for ogbg-molhiv
|
6 |
+
|
7 |
+
## Table of Contents
|
8 |
+
- [Table of Contents](#table-of-contents)
|
9 |
+
- [Dataset Description](#dataset-description)
|
10 |
+
- [Dataset Summary](#dataset-summary)
|
11 |
+
- [Supported Tasks and Leaderboards](#supported-tasks-and-leaderboards)
|
12 |
+
- [Dataset Structure](#dataset-structure)
|
13 |
+
- [Data Properties](#data-properties)
|
14 |
+
- [Data Fields](#data-fields)
|
15 |
+
- [Data Splits](#data-splits)
|
16 |
+
- [Additional Information](#additional-information)
|
17 |
+
- [Licensing Information](#licensing-information)
|
18 |
+
- [Citation Information](#citation-information)
|
19 |
+
- [Contributions](#contributions)
|
20 |
+
|
21 |
+
## Dataset Description
|
22 |
+
|
23 |
+
- **[Homepage](https://ogb.stanford.edu/docs/graphprop/#ogbg-mol)**
|
24 |
+
- **[Repository](https://github.com/snap-stanford/ogb):**:
|
25 |
+
- **Paper:**: Open Graph Benchmark: Datasets for Machine Learning on Graphs (see citation)
|
26 |
+
- **Leaderboard:**: [OGB leaderboard](https://ogb.stanford.edu/docs/leader_graphprop/#ogbg-molhiv) and [Papers with code leaderboard](https://paperswithcode.com/sota/graph-property-prediction-on-ogbg-molhiv)
|
27 |
+
|
28 |
+
### Dataset Summary
|
29 |
+
|
30 |
+
The `ogbg-molhiv` dataset is a small molecular property prediction dataset, adapted from MoleculeNet by teams at Stanford, to be a part of the Open Graph Benchmark.
|
31 |
+
|
32 |
+
### Supported Tasks and Leaderboards
|
33 |
+
|
34 |
+
`ogbg-molhiv` should be used for molecular property prediction (aiming to predict whether molecules inhibit HIV or not), a binary classification task.
|
35 |
+
The associated leaderboards are here: [OGB leaderboard](https://ogb.stanford.edu/docs/leader_graphprop/#ogbg-molhiv) and [Papers with code leaderboard](https://paperswithcode.com/sota/graph-property-prediction-on-ogbg-molhiv).
|
36 |
+
|
37 |
+
## Dataset Structure
|
38 |
+
|
39 |
+
### Data Properties
|
40 |
+
|
41 |
+
| scale | #graphs | average #nodes | average #edges |
|
42 |
+
| small | 41,127 | 25.5 | 27.5 |
|
43 |
+
| average node degree | average cluster coefficient | MaxSCC ratio | graph diameter |
|
44 |
+
| 2.2 | 0.002 | 0.993 | 12.0 |
|
45 |
+
|
46 |
+
### Data Fields
|
47 |
+
|
48 |
+
Each row of a given file is a graph, with:
|
49 |
+
- `x` (list: #nodes x #node-features): nodes
|
50 |
+
- `edge_index` (list: 2 x #edges): pairs of nodes constituting edges
|
51 |
+
- `edge_attr` (list: #edges x #edge-features): for the aforementioned edges, contains their features
|
52 |
+
- `y` (list: 1 x #labels): contains the number of labels available to predict (here 1, equal to zero or one)
|
53 |
+
- `num_nodes` (int): number of nodes of the graph
|
54 |
+
|
55 |
+
### Data Splits
|
56 |
+
|
57 |
+
This data comes from the PyGeometric version of the dataset provided by OGB, and follows the provided data splits.
|
58 |
+
This information can be found back using
|
59 |
+
```python
|
60 |
+
from ogb.graphproppred import PygGraphPropPredDataset
|
61 |
+
|
62 |
+
dataset = PygGraphPropPredDataset(name = 'ogbg-molhiv')
|
63 |
+
|
64 |
+
split_idx = dataset.get_idx_split()
|
65 |
+
train = dataset[split_idx['train']] # valid, test
|
66 |
+
```
|
67 |
+
|
68 |
+
## Additional Information
|
69 |
+
|
70 |
+
### Licensing Information
|
71 |
+
The dataset has been released under MIT license.
|
72 |
+
|
73 |
+
### Citation Information
|
74 |
+
```
|
75 |
+
@inproceedings{hu-etal-2020-open,
|
76 |
+
author = {Weihua Hu and
|
77 |
+
Matthias Fey and
|
78 |
+
Marinka Zitnik and
|
79 |
+
Yuxiao Dong and
|
80 |
+
Hongyu Ren and
|
81 |
+
Bowen Liu and
|
82 |
+
Michele Catasta and
|
83 |
+
Jure Leskovec},
|
84 |
+
editor = {Hugo Larochelle and
|
85 |
+
Marc Aurelio Ranzato and
|
86 |
+
Raia Hadsell and
|
87 |
+
Maria{-}Florina Balcan and
|
88 |
+
Hsuan{-}Tien Lin},
|
89 |
+
title = {Open Graph Benchmark: Datasets for Machine Learning on Graphs},
|
90 |
+
booktitle = {Advances in Neural Information Processing Systems 33: Annual Conference
|
91 |
+
on Neural Information Processing Systems 2020, NeurIPS 2020, December
|
92 |
+
6-12, 2020, virtual},
|
93 |
+
year = {2020},
|
94 |
+
url = {https://proceedings.neurips.cc/paper/2020/hash/fb60d411a5c5b72b2e7d3527cfc84fd0-Abstract.html},
|
95 |
+
}
|
96 |
+
```
|
97 |
+
|
98 |
+
### Contributions
|
99 |
+
|
100 |
+
Thanks to [@clefourrier](https://github.com/clefourrier) for adding this dataset.
|