NothingMuch/GO-Terms huggingface dataset:
The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=13 symmetry. The T=13 capsid is composed of 12 pentameric and 120 hexameric capsomeres.
T=13 icosahedral viral capsid
The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=16 symmetry. The T=16 capsid is composed of 12 pentameric and 150 hexameric capsomeres.
T=16 icosahedral viral capsid
The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=25 symmetry. The T=25 capsid is composed of 12 pentameric and 240 hexameric capsomeres.
T=25 icosahedral viral capsid
The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=147 symmetry. T=147 icosahedral capsid is composed of 12 pentameric and 1460 hexameric capsomeres for a total of 8820 capsid proteins.
T=147 icosahedral capsid
The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=219 symmetry. T=219 icosahedral capsid is composed of 12 pentameric and 2180 hexameric capsomeres for a total of 13140 capsid proteins.
T=219 icosahedral capsid
Generating a movement along a single- or double-stranded RNA molecule, driven by ATP hydrolysis.
RNA translocase activity
The region of a virion in which the nucleic acid is confined.
virion nucleoid
The region of a host cell that contains the viral genome.
host cell viral nucleoid
A turret-like appendage formed at the vertices of an icosahedral capsid.
viral capsid, turret
A crystalline protein matrix surrounding the nucleocapsids of some insect viruses after their release in the environment. Produced in the host cell, the occlusion body protects the infectious virion after death of the host.
viral occlusion body
A viral genome replication process where the template genome is double stranded RNA (dsRNA). Genomic dsRNA is first transcribed into single-stranded (ss) mRNA, which is then replicated to ds-genomic RNA.
double stranded viral RNA replication
A transcription process that uses a viral DNA as a template.
DNA-templated viral transcription
The directed movement of the viral genome or a viral particle towards the cell periphery using host microtubules. Mostly used by viruses that replicate their genome near or in the nucleus to allows newly assembled viral progeny to reach the plasma membrane.
microtubule-dependent intracellular transport of viral material towards cell periphery
The cellular metabolic process in which a cell duplicates one or more molecules of RNA.
RNA replication
Binding to a coreceptor. A coreceptor acts in cooperation with a primary receptor to transmit a signal within the cell.
co-receptor binding
The assembly of a virus capsid that occurs in the nucleus. The assembly of large icosahedral shells for herpesviridae and adenoviridae requires structural proteins that act as chaperones for assembly.
nuclear capsid assembly
The assembly of an icosahedral viral capsid in the cytoplasm. Often occurs by assembling around the viral genome.
cytoplasmic icosahedral capsid assembly
The assembly of a helical viral capsid in the cytoplasm. Occurs by assembling around the viral genome.
cytoplasmic helical capsid assembly
A cytoplasmic viral factory that is electron dense due to high levels of viral RNA. Produced by nucleo-cytoplasmic large DNA viruses (NCLDV) like Poxviridae, Asfarviridae and Iridoviridae, and dsRNA viruses like Reoviridae.
viroplasm viral factory
A cytoplasmic viral factory which is a 50-400nm diameter membrane invagination. Spherules can appear on several enveloped cellular components depending on the virus.
spherule viral factory
A cytoplasmic viral factory derived from the Golgi in which Bunyaviridae replication takes place. Tubes are membranous structures close to the assembly and budding sites, and their function may be to connect viral replication and morphogenesis inside viral factories.
tube viral factory
The first few specialized divisions of an activated animal egg.
embryonic cleavage
The determination of female sex and sexual phenotype in the germ-line of the hermaphrodite.
feminization of hermaphroditic germ-line
The process in which the anatomical structures of the post-embryonic soma are generated and organized.
post-embryonic body morphogenesis
The cell cycle process in which two small cells are generated, as byproducts destined to degenerate, as a result of the first and second meiotic divisions of a primary oocyte during its development to a mature ovum. One polar body is formed in the first division of meiosis and the other in the second division; at each division, the cytoplasm divides unequally, so that the polar body is of much smaller size than the developing oocyte. At the second division in which a polar body is formed, the polar body and the developing oocyte each contain a haploid set of chromosomes.
polar body extrusion after meiotic divisions
Migration of a cell in a multicellular organism that, having changed its location, is required to induce normal properties in one or more cells at its new location. An example of this would be the distal tip cells of Caenorhabditis elegans.
inductive cell migration
Promotion of male sex and sexual phenotypes in the hermaphroditic nematode soma. An example of this is found in Caenorhabditis elegans.
masculinization of hermaphrodite soma
Promotion of female sex and sexual phenotypes in the hermaphroditic soma. An example of this is found in Caenorhabditis elegans.
feminization of hermaphrodite soma
The determination of male sex and sexual phenotype in the germ-line of the hermaphrodite. An example of this is found in Caenorhabditis elegans.
masculinization of hermaphroditic germ-line
The incorporation of tungsten into a tungsten-molybdopterin complex.
tungsten incorporation into tungsten-molybdopterin complex
Any process that results in an increase in the efficacy of transmission at a neuromuscular synapse.
long-term strengthening of neuromuscular junction
Glial cell growth that occurs in the perineurium, a cell layer that ensheaths projections of peripheral nerves, such as motor axons.
perineurial glial growth
Combining with a leucokinin, any of several octapeptide hormones found in insects, and transmitting the signal to initiate a change in cell activity.
leucokinin receptor activity
Catalysis of the splitting and linkage of (1->3)-beta-D-glucan molecules, resulting in (1->3)-beta-D-glucan chain elongation.
1,3-beta-glucanosyltransferase activity
During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes during leptotene and zygotene.
early meiotic recombination nodule assembly
During meiosis, the aggregation, arrangement and bonding together of strand exchange proteins (recombinases) to form small, electron dense structures in association with meiotic chromosomes during pachytene. Involved in the catalysis crossing over.
late meiotic recombination nodule assembly
A process of DNA recombination occurring within a plasmid or between plasmids and other plasmids or DNA molecules.
plasmid recombination
The reverse transcription of an RNA molecule followed by recombination between the resultant cDNA and its homologous chromosomal allele.
RNA-mediated DNA recombination
Binding to acetylcholine, an acetic acid ester of the organic base choline that functions as a neurotransmitter, released at the synapses of parasympathetic nerves and at neuromuscular junctions.
acetylcholine binding
Binding to a SH2 domain (Src homology 2) of a protein, a protein domain of about 100 amino-acid residues and belonging to the alpha + beta domain class.
SH2 domain binding
Any process that results in the repair of damaged RNA.
RNA repair
Coordinated organization of groups of cells in the plane of a follicular epithelium, such that they all orient to similar coordinates.
establishment of planar polarity of follicular epithelium
The maintenance of an established polarized follicular epithelial sheet.
maintenance of polarity of follicular epithelium
The maintenance of an established polarized embryonic epithelial sheet.
maintenance of polarity of embryonic epithelium
The maintenance of an established polarized larval imaginal disc epithelium.
maintenance of polarity of larval imaginal disc epithelium
Coordinated organization of groups of cells in the plane of a larval imaginal disc epithelium, such that they all orient to similar coordinates.
establishment of planar polarity of larval imaginal disc epithelium
Any process in which DNA is protected from damage by, for example, oxidative stress.
DNA protection
Catalysis of the activation of the small ubiquitin-related modifier URM1, through the formation of an ATP-dependent high-energy thiolester bond.
URM1 activating enzyme activity
Catalysis of the activation of the small ubiquitin-related modifier Hub1, through the formation of an ATP-dependent high-energy thiolester bond.
Hub1 activating enzyme activity
A behavioral process whose outcome is a relatively long-lasting behavioral change whereby an organism modifies innate vocalizations to imitate sounds produced by others.
vocal learning
Binding to a phosphate ion.
phosphate ion binding
The specification of the characteristic structures of the mandibular segment following establishment of segment boundaries. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
specification of segmental identity, mandibular segment
Discrete subnuclear bodies in the interchromatin nucleoplasmic space, often located adjacent to nuclear specks. 10-20 paraspeckles are typically found in human cell nuclei.
paraspeckles
A myosin complex containing a class III myosin heavy chain and associated light chains; myosin III is monomeric myosin that serves as a link between the cytoskeleton and the signaling complex involved in phototransduction, and differs from all other myosins in having an N-terminal kinase domain.
myosin III complex
Catalysis of the introduction of an omega-3 double bond into the fatty acid hydrocarbon chain.
omega-3 fatty acid desaturase activity
The shedding of the old collagen and cuticulin-based cuticle fragments during the molting cycle. Examples of this process are found in invertebrates.
ecdysis, collagen and cuticulin-based cuticle
Compensating for the two-fold variation in X:autosome chromosome ratios between sexes by an inactivation of a proportion of genes on both of the X chromosomes of the XX sex, leading to a decrease, of half, of the levels of gene expression from these chromosomes. An example of this process is found in Caenorhabditis elegans.
dosage compensation by hypoactivation of X chromosome
The movement of a cell or organism in response to a stimulus in which the speed or frequency of movement is increased or decreased.
orthokinesis
The movement of a cell or organism in response to a stimulus in which the frequency or magnitude of turning behavior is altered.
klinokinesis
Catalysis of the reduction of versicolorin A to sterigmatocystin.
versicolorin reductase activity
The process in which the anatomical structures of the middle ear are generated and organized. The middle ear is the air-filled cavity within the skull of vertebrates that lies between the outer ear and the inner ear. It is linked to the pharynx (and therefore to outside air) via the Eustachian tube and in mammals contains the three ear ossicles, which transmit auditory vibrations from the outer ear (via the tympanum) to the inner ear (via the oval window).
middle ear morphogenesis
Catalysis of the hydrolysis of nonterminal peptide bonds in a polypeptide chain, occurring within a membrane.
aspartic endopeptidase activity, intramembrane cleaving
The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis.
photosystem II stabilization
The stabilization of the photosystem I protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis.
photosystem I stabilization
Catalysis of the reaction: (S)-2,3-epoxysqualene = alpha-amyrin. This reaction is a cyclization and rearrangement of (S)-2,3-epoxysqualene (2,3-oxidosqualene) into alpha-amyrin.
alpha-amyrin synthase activity
A dimer consisting of an alpha and a beta-subunit that imports proteins with an NLS into the nucleus through a nuclear pore.
NLS-dependent protein nuclear import complex
A complex which usually consists of three components, e.g. in Xenopus and yeast, the export receptor CRM1 (also known as exportin 1), the Ran protein and any RNA with a nuclear export sequence (NES). The complex acts to export RNA molecules with a NES from the nucleus through a nuclear pore.
RNA nuclear export complex
A specialised tubular organelle, assembled in hexagonal bundles within an external membrane. Mannosomes are specific to molluscs and are thought to be involved in a general stress reaction.
mannosome
The lipid bilayer surrounding a chromaffin granule, a specialized secretory vesicle found in the cells of adrenal glands and various other organs, which is concerned with the synthesis, storage, metabolism, and secretion of epinephrine and norepinephrine.
chromaffin granule membrane
The lipid bilayer surrounding a zymogen granule.
zymogen granule membrane
Portion of the cell formed during the process of bacterial sporulation that will ultimately become the core of the endospore. An endospore is a type of dormant cell that is resistant to adverse conditions.
endospore-forming forespore
A protective structure surrounding some fungi and bacteria, attached externally to the cell wall and composed primarily of polysaccharides. Capsules are highly organized structures that adhere strongly to cells and cannot be easily removed. Capsules play important roles in pathogenicity, preventing phagocytosis by other cells, adherence, and resistance to desiccation.
capsule
Binding to a CD4, a receptor found on the surface of T cells, monocytes and macrophages.
CD4 receptor binding
Binding to a CD8, a receptor found on the surface of thymocytes and cytotoxic and suppressor T-lymphocytes.
CD8 receptor binding
A transmembrane protein complex composed of a MHC class I alpha chain and an invariant beta2-microglobin chain, and with or without a bound peptide antigen. Class I here refers to classical class I molecules.
MHC class I protein complex
A transmembrane protein complex composed of an MHC class II alpha and MHC class II beta chain, and with or without a bound peptide or polysaccharide antigen.
MHC class II protein complex
The membrane surrounding the outer segment of a vertebrate photoreceptor.
photoreceptor outer segment membrane
Coarse, bluish-black staining cytoplasmic granules, bounded by a plasma membrane and found in mast cells and basophils. Contents include histamine, heparin, chondroitin sulfates, chymase and tryptase.
mast cell granule
The myosin part of any complex of actin, myosin, and accessory proteins.
actomyosin, myosin complex part
The region of a proplastid to which the DNA is confined.
proplastid nucleoid
A circular DNA molecule containing chloroplast encoded genes.
chloroplast chromosome
The membrane of prothylakoids, underdeveloped thylakoids found in etioplasts, lacking competent photosynthetic membranes.
prothylakoid membrane
The process in which a cell becomes capable of differentiating autonomously into a retinal cone cell regardless of its environment; upon determination, the cell fate cannot be reversed.
retinal cone cell fate determination
The process in which a cell becomes capable of differentiating autonomously into a compound eye cone cell regardless of its environment; upon determination, the cell fate cannot be reversed.
compound eye cone cell fate determination
The beginning of the menstrual cycle; the first menstrual cycle in an individual.
menarche
Cessation of menstruation, occurring in (e.g.) the human female usually around the age of 50.
menopause
The regrowth of the endometrium and blood vessels in the uterus following menstruation, resulting from a rise in progesterone levels.
uterine wall growth
The cyclic, physiologic discharge through the vagina of blood and endometrial tissues from the nonpregnant uterus.
menstruation
The sloughing of the endometrium and blood vessels during menstruation that results from a drop in progesterone levels.
uterine wall breakdown
The process in which the developmental fate of a cell becomes restricted such that it will develop into photoreceptor cell in the ocellus. A photoreceptor cell is a cell that responds to incident electromagnetic radiation. Different classes of photoreceptor have different spectral sensitivities and express different photosensitive pigments.
ocellus photoreceptor cell fate commitment
The expulsion of seminal fluid, thick white fluid containing spermatozoa, from the male genital tract.
sperm ejaculation
The aggregation, arrangement and bonding together of proteins on DNA or RNA to form the complex that mediates dosage compensation on one or more X chromosomes.
dosage compensation complex assembly
Discrete structures that partition the water-insoluble portion of the yolk of oocytes and ova, which may or may not be membrane enclosed.
yolk granule
Binding to a PH domain (pleckstrin homology) of a protein, a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton.
PH domain binding
A membrane-bounded plant organelle found in the developing endosperm, contains storage proteins.
endosperm protein body
Extremely large, unmyelinated axon found in invertebrates. Has high conduction speeds and is usually involved in panic or escape responses.
giant axon
Catalysis of the hydroxylation of an ecdysteroid at carbon position 22.
ecdysteroid 22-hydroxylase activity
Catalysis of the reaction: 2-deoxyecdysone + 2 reduced adrenodoxin + O2 + 2 H+ = ecdysone + 2 oxidized adrenodoxin + H2O.
ecdysteroid 2-hydroxylase activity
The process in which the 3'-terminal CCA of a tRNA is removed and restored. This often happens to uncharged tRNA.
tRNA end turnover
Binding to fucose, the pentose 6-deoxygalactose.
fucose binding
A membrane-enclosed sac that takes up most of the volume of a mature plant cell. Functions include storage, separation of toxic byproducts, and cell growth determination.
central vacuole
Binding to histone deacetylase.
histone deacetylase binding
Interacting selectively and non-covalently, in a non-covalent manner, with peptidoglycan, any of a class of glycoconjugates found in bacterial cell walls.
peptidoglycan binding
Binding to a BRE RNA element (Bruno response element).
BRE binding
Enables the transfer of D-glucarate, the D-enantiomer of glucarate, from one side of a membrane to the other.
D-glucarate transmembrane transporter activity
Enables the transfer of D-glucuronate, the D-enantiomer of glucuronate, from one side of a membrane to the other.
D-glucuronate transmembrane transporter activity
Enables the transfer of D-galactonate, the D-enantiomer of galactonate, from one side of a membrane to the other.
D-galactonate transmembrane transporter activity
The directed movement of microcin B17, a bactericidal peptide (antibiotic) produced by some enteric bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
microcin B17 transport
Enables the transfer of molybdenum (Mo) ions from one side of a membrane to the other.
molybdenum ion transmembrane transporter activity
The directed movement of polymyxin, any of a group of related antibiotics produced by Bacillus polymyxa and active against most Gram-negative bacteria, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
polymyxin transport
The directed movement of fosmidomycin, a phosphonic acid derivative with potent activity against Gram-negative organisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
fosmidomycin transport
Enables the transfer of an arabinan, a polysaccharide composed of arabinose residues, from one side of a membrane to the other.
arabinan transmembrane transporter activity
Catalysis of the reaction: N-acetyl(alpha-tubulin) + H2O = alpha-tubulin + acetate.
tubulin deacetylase activity
Enables the transfer of xanthine from one side of a membrane to the other. Xanthine (2,6-dihydroxypurine) is a purine formed in the metabolic breakdown of guanine, but is not present in nucleic acids.
xanthine transmembrane transporter activity
Enables the transfer of group A colicins (colicins E1, E2, E3, A, K, and N) from one side of a membrane to the other.
group A colicin transmembrane transporter activity
The directed movement of group A colicins (colicins E1, E2, E3, A, K, and N) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
group A colicin transport
The directed movement of benzoate, the anion of benzoic acid (benzenecarboxylic acid) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
benzoate transport
The directed movement of the siderophore chrysobactin (alpha-N-(2,3-dihydroxybenzoyl)-D-lysyl-L-serine) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
chrysobactin transport
The directed movement of achromobactin, a citrate siderophore, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
achromobactin transport
The process in which of D-serine, the D-enantiomer of 2-amino-3-hydroxypropanoic acid is transported across a lipid bilayer, from one side of a membrane to the other, by means of some agent such as a transporter or pore.
D-serine transmembrane transport
The directed movement of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
salicin transport
The directed movement of arbutin, a glycoside found in the bearberry and related plants which has been used to treat urinary-tract diseases, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
arbutin transport
Enables the transfer of salicin (saligenin-beta-D-glucopyranoside), a glucoside of o-hydroxybenzylalcohol, from one side of a membrane to the other.
salicin transmembrane transporter activity
Enables the transfer of arbutin, a glycoside found in the bearberry and related plants which has been used to treat urinary-tract diseases, from one side of a membrane to the other.
arbutin transmembrane transporter activity
Enables the transfer of maltodextrin, any polysaccharide of glucose residues in beta-(1,4) linkage, from one side of a membrane to the other.
maltodextrin transmembrane transporter activity
The directed movement of homoserine, alpha-amino-gamma-hydroxybutyric acid, an intermediate in the biosynthesis of cystathionine, threonine and methionine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
homoserine transport
Binding to a protein or protein complex using energy from ATP hydrolysis.
ATP-dependent protein binding
Binding to a small ribosomal subunit.
ribosomal small subunit binding
Regular periodic sub membranous arrays of vinculin in skeletal and cardiac muscle cells, these arrays link Z-discs to the sarcolemma and are associated with links to extracellular matrix.
costamere
Binding to a chromatin insulator sequence, a DNA sequence that prevents enhancer-mediated activation or repression of transcription.
chromatin insulator sequence binding
The initial developmental process that will lead to the formation of the vertebrate inner ear. The otic placode forms as a thickening of the head ectoderm adjacent to the developing hindbrain.
otic placode formation