NothingMuch/GO-Terms huggingface dataset:
The process in which boundaries between lateral organs and the meristem is established and maintained.
organ boundary specification between lateral organs and the meristem
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence.
response to continuous far red light stimulus by the high-irradiance response system
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Low fluence red light is defined in this case as short pulses of red light followed by darkness, providing a light level of 0.001-0.1 mmol/m2/sec.
response to low fluence red light stimulus
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Very low fluence red light is defined in this case as short pulses of red light followed by darkness, providing light levels of less than 0.001 mmol/m2/sec.
response to very low fluence red light stimulus
Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition.
photosystem II repair
Catalysis of the reaction: indole-3-acetyl-phenylalanine + H2O = indole-3-acetate + phenylalanine.
IAA-Phe conjugate hydrolase activity
Catalysis of the reaction: indole-3-acetyl-leucine + H2O = indole-3-acetate + L-leucine.
IAA-Leu conjugate hydrolase activity
Vascular tissue pattern formation as it occurs in the stem of vascular plants.
stem vascular tissue pattern formation
Alternative respiration pathway consumes oxygen, oxidizes NADH to NAD+ and generates water. During electron flow, proton motive force is diminished resulting in fewer molecules of ATP compared to cytochrome pathway. The pathway is found in plants, algae and some protozoa.
alternative respiration
Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs.
chloroplast mRNA processing
Formation of radial microtubular systems during male meiotic cytokinesis in plants.
radial microtubular system formation
The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore.
establishment or maintenance of transmembrane electrochemical gradient
The process whose specific outcome is the progression of the floral nectaries over time, from its formation to the mature structure.
nectary development
The aggregation, arrangement and bonding together of a set of components to form NADH:plastoquinone dehydrogenase complex, which is involved in the non-photochemical reduction of plastoquinones, as well as the cyclic electron transport around photosystem I.
NADH dehydrogenase complex (plastoquinone) assembly
Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes.
somatic embryogenesis
The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex.
SCF complex assembly
Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell.
brassinosteroid homeostasis
Growth or movement in a sessile organism toward or away from water, as of the roots of a plant.
hydrotropism
Catalysis of the reaction: phytol + CTP = phytyl monophosphate + CDP + H+.
phytol kinase activity
The protein transport machinery of the chloroplast outer membrane that contains at least three components Toc159, Toc75 and Toc34, interacts with precursor proteins which are imported into the chloroplast in a GTP dependant manner.
chloroplast outer membrane translocon
Catalysis of the reaction: pinoresinol + NADPH + H+ = lariciresinol + NADP+.
pinoresinol reductase activity
Catalysis of the reaction: lariciresinol + NADPH + H+ = secoisolariciresinol + NADP+.
lariciresinol reductase activity
The chemical reactions and pathways resulting in the formation of the pectidic homogalacturonan, characterized by a backbone of (1->4)-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3.
homogalacturonan biosynthetic process
Enables the directed movement of chlorophyll catabolites such as non-fluorescent chlorophyll catabolites (NCCs), from one side of a membrane to the other.
chlorophyll catabolite transmembrane transporter activity
Catalysis of the reaction: GTP(out) + GDP(in) = GTP(in) + GDP(out).
GTP:GDP antiporter activity
Catalysis of the reaction: (+)-abscisate + UDP-D-glucose = abscisic acid glucose ester + UDP.
abscisic acid glucosyltransferase activity
Catalysis of the reaction: protein C-terminal S-farnesyl-L-cysteine methyl ester + H2O = protein C-terminal S-farnesyl-L-cysteine + methanol + H+.
prenylcysteine methylesterase activity
Catalysis of the reaction: dihydrocamalexic acid = camalexin + CO2 + H+.
dihydrocamalexic acid decarboxylase activity
Any process that reduces or removes the toxicity of cobalt ion (Co2+). These include transport of cobalt away from sensitive areas and to compartments or complexes whose purpose is sequestration of cobalt ion.
detoxification of cobalt ion
Vascular tissue pattern formation as it occurs in the leaf of vascular plants.
leaf vascular tissue pattern formation
The chemical reactions and pathways resulting in the formation of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms.
rhamnogalacturonan II biosynthetic process
Binds to and modulates the activity of acetylglutamate kinase.
acetylglutamate kinase regulator activity
Any process that reduces or removes the toxicity of zinc ion. These include transport of zinc away from sensitive areas and to compartments or complexes whose purpose is sequestration of zinc ion.
detoxification of zinc ion
Binding to a phytochrome.
phytochrome binding
Binding to phosphatidylinositol-5-phosphate, a derivative of phosphatidylinositol in which the inositol ring is phosphorylated at the 5' position.
phosphatidylinositol-5-phosphate binding
Any process that modulates the frequency, rate or extent of vegetative phase change. Vegetative phase change is the set of post-embryonic processes involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development.
regulation of vegetative phase change
Catalysis of the reaction: S-adenosyl-L-methionine + a gibberellin = S-adenosyl-L-homocysteine + a gibberellin methyl ester.
gibberellin carboxyl-O-methyltransferase activity
The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols.
suberin biosynthetic process
Catalysis of the reaction: L-galactose-1-phosphate + H2O = L-galactose + phosphate.
L-galactose-1-phosphate phosphatase activity
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of magnesium.
cellular response to magnesium starvation
Catalysis of the reaction: homogentisic acid + farnesyl diphosphate = 2-methyl-6-farnesylplastoquinol.
homogentisate farnesyltransferase activity
Any process that stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity.
negative regulation of anion channel activity
Any process that activates or increases the frequency, rate or extent of an ethylene biosynthetic process.
positive regulation of ethylene biosynthetic process
Any process that stops, prevents, or reduces the frequency, rate or extent of an ethylene biosynthetic process.
negative regulation of ethylene biosynthetic process
A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. Isoamylases in animals are localized in the extracellular space.
extracellular isoamylase complex
A protein complex whose composition varies amongst species; in rice it probably exists in a homo-tetramer to homo-hexamer form and in Gram negative bacteria as a dimer. Functions in the hydrolysis of alpha-(1,6)-D-glucosidic branch linkages. Isoamylases in plants are intracellular and probably chloroplast localized.
chloroplast isoamylase complex
A chromocenter adjacent to the nucleolus.
perinucleolar chromocenter
The process that gives rise to the stomatal complex. This process pertains to the initial formation of a structure from unspecified parts. The stomatal complex is the stomatal guard cells and their associated epidermal cells.
stomatal complex formation
The chemical reactions and pathways resulting in the formation of phaseic acid (PA), a catabolite of the plant hormone abscisic acid (ABA).
phaseic acid biosynthetic process
Binding to double-stranded methylated DNA. Methylation of cytosine or adenine in DNA is an important mechanism for establishing stable heritable epigenetic marks.
double-stranded methylated DNA binding
Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of brassinosteroids.
negative regulation of brassinosteroid biosynthetic process
Binding to a methylated cytosine/unspecified/guanine trinucleotide.
methyl-CpNpG binding
Binding to a methylated cytosine/unspecified/unspecified trinucleotide.
methyl-CpNpN binding
A fatty acid oxidation process in which the methyl group at the end of the fatty acid molecule (the omega carbon) is first oxidized to a hydroxyl group, then to an oxo group, and finally to a carboxyl group. The long chain dicarboxylates derived from omega-oxidation then enter the beta-oxidation pathway for further degradation.
fatty acid omega-oxidation
The process that gives rise to a bract. This process pertains to the initial formation of a structure from unspecified parts. A bract is a leaf, usually different in form from the foliage leaves, subtending a flower or inflorescence.
bract formation
Catalysis of the oxidative cleavage of carotenoids at the (9, 10) and/or (9', 10') double bond.
9,10 (9', 10')-carotenoid-cleaving dioxygenase activity
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfur.
cellular response to sulfur starvation
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae.
regulation of glucosinolate biosynthetic process
The process in which a meristemoid acquires the specialized features of a guard mother cell.
guard mother cell differentiation
Catalysis of the reaction: GDP-L-galactose + myo-inositol 1-phosphate = alpha-L-galactose-1-phosphate + GDP-myoinositol.
GDP-galactose:myoinositol-1-phosphate guanylyltransferase activity
A respiratory electron flow (from NAD(P)H to plastoquinone (PQ) and O2) involving both a nonphotochemical reduction and re-oxidation of PQ pool.
chlororespiration
The process whose specific outcome is the progression of the stele over time, from its formation to the mature structure. The stele is the central column of primary vascular tissue in the root and any tissue that it surrounds.
stele development
An interaction between the pollen tube, part of the male gametophyte, and the female gametophyte (typically the synergid cells), that results in the arrest of pollen tube growth, rupture of the pollen tube and the release of the sperm cells.
pollen tube reception
Catalysis of the reaction: S-adenosyl-L-methioninamine + spermidine = S-methyl-5'-thioadenosine + thermospermine + H+.
thermospermine synthase activity
Catalysis of the reaction: UDP-galactose + N-glycan = galactose-beta-1,3-N-glycan + UDP.
UDP-galactose:N-glycan beta-1,3-galactosyltransferase activity
Catalysis of the reaction: UDP-4-keto-6-deoxyglucose = UDP-4-keto-rhamnose.
UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity
Catalysis of the reaction: UDP-4-keto-rhamnose + NADPH = UDP-rhamnose + NADP+.
UDP-4-keto-rhamnose-4-keto-reductase activity
Catalysis of the reaction: alpha-L-arabinose 1-phosphate + UTP = UDP-L-arabinose + diphosphate.
UTP:arabinose-1-phosphate uridylyltransferase activity
The process in which an organism retains a population of shoot apical meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate.
maintenance of shoot apical meristem identity
The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome but do not involve ubiquitin.
proteasomal ubiquitin-independent protein catabolic process
The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary.
transmitting tissue development
Any process that stops, prevents, or reduces the frequency or rate of initiation of conjugation with cellular fusion.
negative regulation of induction of conjugation with cellular fusion
Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular response to nitrogen starvation.
negative regulation of cellular response to nitrogen starvation
Binds to and stops, prevents or reduces the activity of telomerase.
telomerase inhibitor activity
The unidirectional movement of auxin from the apex to base of an organ, including the shoot, leaf, primary root, or lateral root.
basipetal auxin transport
The unidirectional movement of auxin from the base towards the apex of an organ, including the shoot, leaf, primary root, or lateral root.
acropetal auxin transport
Enables the transfer of nitrate from the inside of the cell to the outside of the cell across a membrane.
nitrate efflux transmembrane transporter activity
Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a ketone, carried out by individual cells.
regulation of ketone catabolic process
Any process that modulates the frequency, rate or extent of growth at the tip of a bud, in a cell that reproduces by budding.
regulation of budding cell apical bud growth
Any process that increases the rate or frequency of platelet activation. Platelet activation is a series of progressive, overlapping events triggered by exposure of the platelets to subendothelial tissue.
positive regulation of platelet activation
Any process that increases or activates the frequency, rate, or extent of production of vascular endothelial growth factor.
positive regulation of vascular endothelial growth factor production
An process which modulate the frequency, rate or extent of starch biosynthesis, the chemical reactions and pathways resulting in the formation of starch.
regulation of starch biosynthetic process
The process in which a floral meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate).
floral meristem determinacy
The controlled release of glutamine by a cell.
glutamine secretion
Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants.
cotyledon vascular tissue pattern formation
The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis.
leaf proximal/distal pattern formation
The chemical reactions and pathways resulting in the formation of volatile molecules emitted from green plants, such as hexenal, hexenol and hexenyl acetate, from linoleic acid or linolenic acid.
green leaf volatile biosynthetic process
Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth.
positive regulation of auxin biosynthetic process
Regulation of the chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene (ethene), a fruit-ripening hormone in plants.
regulation of 1-aminocyclopropane-1-carboxylate metabolic process
Any process that increases the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.
positive regulation of cytoplasmic mRNA processing body assembly
Any process that decreases the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body.
negative regulation of cytoplasmic mRNA processing body assembly
The process that gives rise to aerenchyma, parenchyma tissue containing particularly large intercellular spaces of schizogenous or lysigenous origin. This process pertains to the initial formation of a structure from unspecified parts.
aerenchyma formation
Any process that stops, prevents, or reduces the frequency, rate or extent of DNA-dependent transcription using a mechanism that involves the catabolism of a sequence-specific DNA-binding transcription factor by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome.
negative regulation of transcription by transcription factor catabolism
The regionalization process in which the identity of an ovule is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized.
specification of ovule identity
Any process that increases the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment.
positive regulation of mitochondrial fusion
Any process that decreases the frequency, rate or extent of merging of two or more mitochondria within a cell to form a single compartment.
negative regulation of mitochondrial fusion
Any process that increases the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels.
positive regulation of cell communication by chemical coupling
Any process that decreases the frequency, rate or extent of cell communication via chemical coupling. Cell communication by chemical coupling is the process that mediates signaling interactions between one cell and another cell by the transfer of small, water-soluble molecules or metabolites between their adjacent cytoplasms via intercellular protein channels.
negative regulation of cell communication by chemical coupling
The process in which the developmental fate of a cell becomes restricted such that it will develop into an apical cell. The apical cell is the upper cell formed after the first division of the zygote.
apical cell fate commitment
Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a chemical stimulus.
negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to chemical stimulus
Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a disturbance in organismal or cellular homeostasis.
negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to stress
Any process that decreases the frequency, rate or extent of the synthesis of RNA from ribosomal protein genes by RNA polymerase II, originating at an RNA polymerase II promoter, as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
negative regulation of ribosomal protein gene transcription from RNA polymerase II promoter in response to nutrient levels
Any process that decreases the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum.
negative regulation of alkaline phosphatase activity
Any process that increases the frequency, rate or extent of alkaline phosphatase activity, the catalysis of the reaction: an orthophosphoric monoester + H2O = an alcohol + phosphate, with an alkaline pH optimum.
positive regulation of alkaline phosphatase activity
Any process that decreases the frequency, rate or extent of the regulated release of norepinephrine.
negative regulation of norepinephrine secretion
Any process that increases the frequency, rate or extent of the regulated release of norepinephrine.
positive regulation of norepinephrine secretion
The cell cycle process in which the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang resulting in the transfer of genetic information from one helix to another.
meiotic DNA double-strand break processing involved in meiotic gene conversion
The cell cycle process in which the 5' to 3' exonucleolytic resection of the DNA at the site of the break to form a 3' single-strand DNA overhang occurs resulting in double strand break formation and repair through a double Holliday junction intermediate.
meiotic DNA double-strand break processing involved in reciprocal meiotic recombination
The formation of a stable duplex DNA that contains one strand from each of the two recombining DNA molecules resulting in the error-free repair of a double-strand break without the exchange of adjacent sequences.
heteroduplex formation involved in double-strand break repair via synthesis-dependent strand annealing
Any process that modulates the frequency, rate or extent of ferrochelatase activity; catalysis of the reaction: protoporphyrin + Fe2+ = protoheme + 2 H+.
regulation of ferrochelatase activity
Binding to a serum response element (SRE), a short sequence with dyad symmetry found in the promoters of some of the cellular immediate-early genes, regulated by serum.
serum response element binding
Any process that increases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process in which a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.
positive regulation of macrophage derived foam cell differentiation
Any process that decreases the rate, frequency or extent of macrophage derived foam cell differentiation. Macrophage derived foam cell differentiation is the process in which a macrophage acquires the specialized features of a foam cell. A foam cell is a type of cell containing lipids in small vacuoles and typically seen in atherosclerotic lesions, as well as other conditions.
negative regulation of macrophage derived foam cell differentiation