Moussab/ORKG-training-evaluation-set huggingface dataset:
Research field: Ecology and Biodiversity of Animals and Ecosystems, Organismic Interactions
Title: DNA barcoding of tropical black flies (Diptera: Simuliidae) of Thailand
Abstract: The ecological and medical importance of black flies drives the need for rapid and reliable identification of these minute, structurally uniform insects. We assessed the efficiency of DNA barcoding for species identification of tropical black flies. A total of 351 cytochrome c oxidase subunit 1 sequences were obtained from 41 species in six subgenera of the genus Simulium in Thailand. Despite high intraspecific genetic divergence (mean = 2.00%, maximum = 9.27%), DNA barcodes provided 96% correct identification. Barcodes also differentiated cytoforms of selected species complexes, albeit with varying levels of success. Perfect differentiation was achieved for two cytoforms of Simulium feuerborni, and 91% correct identification was obtained for the Simulium angulistylum complex. Low success (33%), however, was obtained for the Simulium siamense complex. The differential efficiency of DNA barcodes to discriminate cytoforms was attributed to different levels of genetic structure and demographic histories of the taxa. DNA barcode trees were largely congruent with phylogenies based on previous molecular, chromosomal and morphological analyses, but revealed inconsistencies that will require further evaluation.
Extracted statement — Study Location : Thailand
Research field: Ecology and Biodiversity of Animals and Ecosystems, Organismic Interactions
Title: DNA Barcoding to Improve the Taxonomy of the Afrotropical Hoverflies (Insecta: Diptera: Syrphidae)
Abstract: The identification of Afrotropical hoverflies is very difficult because of limited recent taxonomic revisions and the lack of comprehensive identification keys. In order to assist in their identification, and to improve the taxonomy of this group, we constructed a reference dataset of 513 COI barcodes of 90 of the more common nominal species from Ghana, Togo, Benin and Nigeria (W Africa) and added ten publically available COI barcodes from nine nominal Afrotropical species to this (total: 523 COI barcodes; 98 nominal species; 26 genera). The identification accuracy of this dataset was evaluated with three methods (K2P distance-based, Neighbor-Joining (NJ) / Maximum Likelihood (ML) analysis, and using SpeciesIdentifier). Results of the three methods were highly congruent and showed a high identification success. Nine species pairs showed a low (< 0.03) mean interspecific K2P distance that resulted in several incorrect identifications. A high (> 0.03) maximum intraspecific K2P distance was observed in eight species and barcodes of these species not always formed single clusters in the NJ / ML analayses which may indicate the occurrence of cryptic species. Optimal K2P thresholds to differentiate intra- from interspecific K2P divergence were highly different among the three subfamilies (Eristalinae: 0.037, Syrphinae: 0.06, Microdontinae: 0.007–0.02), and among the different general suggesting that optimal thresholds are better defined at the genus level. In addition to providing an alternative identification tool, our study indicates that DNA barcoding improves the taxonomy of Afrotropical hoverflies by selecting (groups of) taxa that deserve further taxonomic study, and by attributing the unknown sex to species for which only one of the sexes is known.
Extracted statement — Study Location : Togo
Research field: Ecology and Evolutionary Biology
Title: Seedling traits, plasticity and local differentiation as strategies of invasive species of Impatiens in central Europe
Abstract: Background and Aims Invasiveness of some alien plants is associated with their traits, plastic responses to environmental conditions and interpopulation differentiation. To obtain insights into the role of these processes in contributing to variation in performance, we compared congeneric species of Impatiens (Balsaminaceae) with different origin and invasion status that occur in central Europe. Methods Native I. noli-tangere and three alien species (highly invasive I. glandulifera, less invasive I. parviflora and potentially invasive I. capensis) were studied and their responses to simulated canopy shading and different nutrient and moisture levels were determined in terms of survival and seedling traits. Key Results and Conclusions Impatiens glandulifera produced high biomass in all the treatments and the control, exhibiting the ‘Jack-and-master’ strategy that makes it a strong competitor from germination onwards. The results suggest that plasticity and differentiation occurred in all the species tested and that along the continuum from plasticity to differentiation, the species at the plasticity end is the better invader. The most invasive species I. glandulifera appears to be highly plastic, whereas the other two less invasive species, I. parviflora and I. capensis, exhibited lower plasticity but rather strong population differentiation. The invasive Impatiens species were taller and exhibited higher plasticity and differentiation than native I. noli-tangere. This suggests that even within one genus, the relative importance of the phenomena contributing to invasiveness appears to be species'specific.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Multiple common garden experiments suggest lack of local adaptation in an invasive ornamental plant
Abstract: Aims Adaptive evolution along geographic gradients of climatic conditions is suggested to facilitate the spread of invasive plant species, leading to clinal variation among populations in the introduced range. We investigated whether adaptation to climate is also involved in the invasive spread of an ornamental shrub, Buddleja davidii, across western and central Europe. Methods We combined a common garden experiment, replicated in three climatically different central European regions, with reciprocal transplantation to quantify genetic differentiation in growth and reproductive traits of 20 invasive B. davidii populations. Additionally, we compared compensatory regrowth among populations after clipping of stems to simulate mechanical damage.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Contrasting plant physiological adaptation to climate in the native and introduced range of Hypericum perforatum
Abstract: Abstract How introduced plants, which may be locally adapted to specific climatic conditions in their native range, cope with the new abiotic conditions that they encounter as exotics is not well understood. In particular, it is unclear what role plasticity versus adaptive evolution plays in enabling exotics to persist under new environmental circumstances in the introduced range. We determined the extent to which native and introduced populations of St. John's Wort (Hypericum perforatum) are genetically differentiated with respect to leaf-level morphological and physiological traits that allow plants to tolerate different climatic conditions. In common gardens in Washington and Spain, and in a greenhouse, we examined clinal variation in percent leaf nitrogen and carbon, leaf δ13C values (as an integrative measure of water use efficiency), specific leaf area (SLA), root and shoot biomass, root/shoot ratio, total leaf area, and leaf area ratio (LAR). As well, we determined whether native European H. perforatum experienced directional selection on leaf-level traits in the introduced range and we compared, across gardens, levels of plasticity in these traits. In field gardens in both Washington and Spain, native populations formed latitudinal clines in percent leaf N. In the greenhouse, native populations formed latitudinal clines in root and shoot biomass and total leaf area, and in the Washington garden only, native populations also exhibited latitudinal clines in percent leaf C and leaf δ13C. Traits that failed to show consistent latitudinal clines instead exhibited significant phenotypic plasticity. Introduced St. John's Wort populations also formed significant or marginally significant latitudinal clines in percent leaf N in Washington and Spain, percent leaf C in Washington, and in root biomass and total leaf area in the greenhouse. In the Washington common garden, there was strong directional selection among European populations for higher percent leaf N and leaf δ13C, but no selection on any other measured trait. The presence of convergent, genetically based latitudinal clines between native and introduced H. perforatum, together with previously published molecular data, suggest that native and exotic genotypes have independently adapted to a broad-scale variation in climate that varies with latitude.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Do biodiversity and human impact influence the introduction or establishment of alien mammals?
Abstract: What determines the number of alien species in a given region? ‘Native biodiversity’ and ‘human impact’ are typical answers to this question. Indeed, studies comparing different regions have frequently found positive relationships between number of alien species and measures of both native biodiversity (e.g. the number of native species) and human impact (e.g. human population). These relationships are typically explained by biotic acceptance or resistance, i.e. by influence of native biodiversity and human impact on the second step of the invasion process, establishment. The first step of the invasion process, introduction, has often been ignored. Here we investigate whether relationships between number of alien mammals and native biodiversity or human impact in 43 European countries are mainly shaped by differences in number of introduced mammals or establishment success. Our results suggest that correlation between number of native and established mammals is spurious, as it is simply explainable by the fact that both quantities are linked to country area. We also demonstrate that countries with higher human impact host more alien mammals than other countries because they received more introductions than other countries. Differences in number of alien mammals cannot be explained by differences in establishment success. Our findings highlight importance of human activities and question, at least for mammals in Europe, importance of biotic acceptance and resistance.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Quarantine arthropod invasions in Europe: the role of climate, hosts and propagule pressure
Abstract: To quantify the relative importance of propagule pressure, climate‐matching and host availability for the invasion of agricultural pest arthropods in Europe and to forecast newly emerging pest species and European areas with the highest risk of arthropod invasion under current climate and a future climate scenario (A1F1).
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Introduction history and species characteristics partly explain naturalization success of North American woody species in Europe
Abstract: 1 The search for general characteristics of invasive species has not been very successful yet. A reason for this could be that current invasion patterns are mainly reflecting the introduction history (i.e. time since introduction and propagule pressure) of the species. Accurate data on the introduction history are, however, rare, particularly for introduced alien species that have not established. As a consequence, few studies that tested for the effects of species characteristics on invasiveness corrected for introduction history. 2 We tested whether the naturalization success of 582 North American woody species in Europe, measured as the proportion of European geographic regions in which each species is established, can be explained by their introduction history. For 278 of these species we had data on characteristics related to growth form, life cycle, growth, fecundity and environmental tolerance. We tested whether naturalization success can be further explained by these characteristics. In addition, we tested whether the effects of species characteristics differ between growth forms. 3 Both planting frequency in European gardens and time since introduction significantly increased naturalization success, but the effect of the latter was relatively weak. After correction for introduction history and taxonomy, six of the 26 species characteristics had significant effects on naturalization success. Leaf retention and precipitation tolerance increased naturalization success. Tree species were only 56% as likely to naturalize as non‐tree species (vines, shrubs and subshrubs), and the effect of planting frequency on naturalization success was much stronger for non‐trees than for trees. On the other hand, the naturalization success of trees, but not for non‐trees, increased with native range size, maximum plant height and seed spread rate. 4 Synthesis. Our results suggest that introduction history, particularly planting frequency, is an important determinant of current naturalization success of North American woody species (particularly of non‐trees) in Europe. Therefore, studies comparing naturalization success among species should correct for introduction history. Species characteristics are also significant determinants of naturalization success, but their effects may differ between growth forms.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Propagule pressure and the invasion risks of non-native freshwater fishes: a case study in England
Abstract: European countries in general, and England in particular, have a long history of introducing non-native fish species, but there exist no detailed studies of the introduction pathways and propagules pressure for any European country. Using the nine regions of England as a preliminary case study, the potential relationship between the occurrence in the wild of non-native freshwater fishes (from a recent audit of non-native species) and the intensity (i.e. propagule pressure) and diversity of fish imports was investigated. The main pathways of introduction were via imports of fishes for ornamental use (e.g. aquaria and garden ponds) and sport fishing, with no reported or suspected cases of ballast water or hull fouling introductions. The recorded occurrence of non-native fishes in the wild was found to be related to the time (number of years) since the decade of introduction. A shift in the establishment rate, however, was observed in the 1970s after which the ratio of established-to-introduced species declined. The number of established non-native fish species observed in the wild was found to increase significantly (P < 0·05) with increasing import intensity (log10x + 1 of the numbers of fish imported for the years 2000–2004) and with increasing consignment diversity (log10x + 1 of the numbers of consignment types imported for the years 2000–2004). The implications for policy and management are discussed.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: The demography of introduction pathways, propagule pressure and occurrences of non-native freshwater fish in England
Abstract: 1. Biological invasion theory predicts that the introduction and establishment of non-native species is positively correlated with propagule pressure. Releases of pet and aquarium fishes to inland waters has a long history; however, few studies have examined the demographic basis of their importation and incidence in the wild. 2. For the 1500 grid squares (10×10 km) that make up England, data on human demographics (population density, numbers of pet shops, garden centres and fish farms), the numbers of non-native freshwater fishes (from consented licences) imported in those grid squares (i.e. propagule pressure), and the reported incidences (in a national database) of non-native fishes in the wild were used to examine spatial relationships between the occurrence of non-native fishes and the demographic factors associated with propagule pressure, as well as to test whether the demographic factors are statistically reliable predictors of the incidence of non-native fishes, and as such surrogate estimators of propagule pressure. 3. Principal coordinates of neighbour matrices analyses, used to generate spatially explicit models, and confirmatory factor analysis revealed that spatial distributions of non-native species in England were significantly related to human population density, garden centre density and fish farm density. Human population density and the number of fish imports were identified as the best predictors of propagule pressure. 4. Human population density is an effective surrogate estimator of non-native fish propagule pressure and can be used to predict likely areas of non-native fish introductions. In conjunction with fish movements, where available, human population densities can be used to support biological invasion monitoring programmes across Europe (and perhaps globally) and to inform management decisions as regards the prioritization of areas for the control of non-native fish introductions. © Crown copyright 2010. Reproduced with the permission of her Majesty's Stationery Office. Published by John Wiley & Sons, Ltd.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Determinants of vertebrate invasion success in Europe and North America
Abstract: Species that are frequently introduced to an exotic range have a high potential of becoming invasive. Besides propagule pressure, however, no other generally strong determinant of invasion success is known. Although evidence has accumulated that human affiliates (domesticates, pets, human commensals) also have high invasion success, existing studies do not distinguish whether this success can be completely explained by or is partly independent of propagule pressure. Here, we analyze both factors independently, propagule pressure and human affiliation. We also consider a third factor directly related to humans, hunting, and 17 traits on each species' population size and extent, diet, body size, and life history. Our dataset includes all 2362 freshwater fish, mammals, and birds native to Europe or North America. In contrast to most previous studies, we look at the complete invasion process consisting of (1) introduction, (2) establishment, and (3) spread. In this way, we not only consider which of the introduced species became invasive but also which species were introduced. Of the 20 factors tested, propagule pressure and human affiliation were the two strongest determinants of invasion success across all taxa and steps. This was true for multivariate analyses that account for intercorrelations among variables as well as univariate analyses, suggesting that human affiliation influenced invasion success independently of propagule pressure. Some factors affected the different steps of the invasion process antagonistically. For example, game species were much more likely to be introduced to an exotic continent than nonhunted species but tended to be less likely to establish themselves and spread. Such antagonistic effects show the importance of considering the complete invasion process.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Predicting invasions by woody species in a temperate zone: a test of three risk assessment schemes in the Czech Republic (Central Europe)
Abstract: To assess the validity of previously developed risk assessment schemes in the conditions of Central Europe, we tested (1) Australian weed risk assessment scheme (WRA; Pheloung et al. 1999); (2) WRA with additional analysis by Daehler et al. (2004); and (3) decision tree scheme of Reichard and Hamilton (1997) developed in North America, on a data set of 180 alien woody species commonly planted in the Czech Republic. This list included 17 invasive species, 9 naturalized but non‐invasive, 31 casual aliens, and 123 species not reported to escape from cultivation. The WRA model with additional analysis provided best results, rejecting 100% of invasive species, accepting 83.8% of non‐invasive, and recommending further 13.0% for additional analysis. Overall accuracy of the WRA model with additional analysis was 85.5%, higher than that of the basic WRA scheme (67.9%) and the Reichard–Hamilton model (61.6%). Only the Reichard–Hamilton scheme accepted some invaders. The probability that an accepted species will become an invader was zero for both WRA models and 3.2% for the Reichard–Hamilton model. The probability that a rejected species would have been an invader was 77.3% for both WRA models and 24.0% for the Reichard–Hamilton model. It is concluded that the WRA model, especially with additional analysis, appears to be a promising template for building a widely applicable system for screening out invasive plant introductions.
Extracted statement — Continent: Europe
Research field: Ecology and Evolutionary Biology
Title: Ecological traits of the amphipod invader Dikerogammarus villosus on a mesohabitat scale
Abstract: Since 1995, Dikerogammarus villosus Sowinski, a Ponto-Caspian amphi- pod species, has been invading most of Western Europe' s hydrosystems. D. villosus geographic extension and quickly increasing population density has enabled it to become a major component of macrobenthic assemblages in recipient ecosystems. The ecological characteristics of D. villosus on a mesohabitat scale were investigated at a station in the Moselle River. This amphipod is able to colonize a wide range of sub- stratum types, thus posing a threat to all freshwater ecosystems. Rivers whose domi- nant substratum is cobbles and which have tree roots along the banks could harbour particularly high densities of D. villosus. A relationship exists between substratum par- ticle size and the length of the individuals, and spatial segregation according to length was shown. This allows the species to limit intra-specific competition between genera- tions while facilitating reproduction. A strong association exists between D. villosus and other Ponto-Caspian species, such as Dreissena polymorpha and Corophium cur- vispinum, in keeping with Invasional Meltdown Theory. Four taxa (Coenagrionidae, Calopteryx splendens, Corophium curvispinum and Gammarus pulex ) exhibited spa- tial niches that overlap significantly that of D. villosus. According to the predatory be- haviour of the newcomer, their populations may be severely impacted.
Extracted statement — Continent: Europe