Moussab/ORKG-training-evaluation-set huggingface dataset:
Research field: Ecology and Biodiversity of Animals and Ecosystems, Organismic Interactions
Title: Characterization and comparison of poorly known moth communities through DNA barcoding in two Afrotropical environments in Gabon
Abstract: Biodiversity research in tropical ecosystems-popularized as the most biodiverse habitats on Earth-often neglects invertebrates, yet invertebrates represent the bulk of local species richness. Insect communities in particular remain strongly impeded by both Linnaean and Wallacean shortfalls, and identifying species often remains a formidable challenge inhibiting the use of these organisms as indicators for ecological and conservation studies. Here we use DNA barcoding as an alternative to the traditional taxonomic approach for characterizing and comparing the diversity of moth communities in two different ecosystems in Gabon. Though sampling remains very incomplete, as evidenced by the high proportion (59%) of species represented by singletons, our results reveal an outstanding diversity. With about 3500 specimens sequenced and representing 1385 BINs (Barcode Index Numbers, used as a proxy to species) in 23 families, the diversity of moths in the two sites sampled is higher than the current number of species listed for the entire country, highlighting the huge gap in biodiversity knowledge for this country. Both seasonal and spatial turnovers are strikingly high (18.3% of BINs shared between seasons, and 13.3% between sites) and draw attention to the need to account for these when running regional surveys. Our results also highlight the richness and singularity of savannah environments and emphasize the status of Central African ecosystems as hotspots of biodiversity.
Extracted statement — No. of estimated species (Method): BINs
Research field: Ecology and Biodiversity of Animals and Ecosystems, Organismic Interactions
Title: Probing planetary biodiversity with DNA barcodes: The Noctuoidea of North America
Abstract: This study reports the assembly of a DNA barcode reference library for species in the lepidopteran superfamily Noctuoidea from Canada and the USA. Based on the analysis of 69,378 specimens, the library provides coverage for 97.3% of the noctuoid fauna (3565 of 3664 species). In addition to verifying the strong performance of DNA barcodes in the discrimination of these species, the results indicate close congruence between the number of species analyzed (3565) and the number of sequence clusters (3816) recognized by the Barcode Index Number (BIN) system. Distributional patterns across 12 North American ecoregions are examined for the 3251 species that have GPS data while BIN analysis is used to quantify overlap between the noctuoid faunas of North America and other zoogeographic regions. This analysis reveals that 90% of North American noctuoids are endemic and that just 7.5% and 1.8% of BINs are shared with the Neotropics and with the Palearctic, respectively. One third (29) of the latter species are recent introductions and, as expected, they possess low intraspecific divergences.
Extracted statement — No. of estimated species (Method): BINs
Research field: Ecology and Biodiversity of Animals and Ecosystems, Organismic Interactions
Title: Close congruence between Barcode Index Numbers (bins) and species boundaries in the Erebidae (Lepidoptera: Noctuoidea) of the Iberian Peninsula
Abstract: Abstract The DNA barcode reference library for Lepidoptera holds much promise as a tool for taxonomic research and for providing the reliable identifications needed for conservation assessment programs. We gathered sequences for the barcode region of the mitochondrial cytochrome c oxidase subunit I gene from 160 of the 176 nominal species of Erebidae moths (Insecta: Lepidoptera) known from the Iberian Peninsula. These results arise from a research project which constructing a DNA barcode library for the insect species of Spain. New records for 271 specimens (122 species) are coupled with preexisting data for 38 species from the Iberian fauna. Mean interspecific distance was 12.1%, while the mean nearest neighbour divergence was 6.4%. All 160 species possessed diagnostic barcode sequences, but one pair of congeneric taxa (Eublemma rosea and Eublemma rietzi) were assigned to the same BIN. As well, intraspecific sequence divergences higher than 1.5% were detected in four species which likely represent species complexes. This study reinforces the effectiveness of DNA barcoding as a tool for monitoring biodiversity in particular geographical areas and the strong correspondence between sequence clusters delineated by BINs and species recognized through detailed taxonomic analysis.
Extracted statement — No. of estimated species (Method): BINs
Research field: Ecology and Biodiversity of Animals and Ecosystems, Organismic Interactions
Title: A DNA Barcode Library for North American Pyraustinae (Lepidoptera: Pyraloidea: Crambidae)
Abstract: Although members of the crambid subfamily Pyraustinae are frequently important crop pests, their identification is often difficult because many species lack conspicuous diagnostic morphological characters. DNA barcoding employs sequence diversity in a short standardized gene region to facilitate specimen identifications and species discovery. This study provides a DNA barcode reference library for North American pyraustines based upon the analysis of 1589 sequences recovered from 137 nominal species, 87% of the fauna. Data from 125 species were barcode compliant (>500bp, <1% n), and 99 of these taxa formed a distinct cluster that was assigned to a single BIN. The other 26 species were assigned to 56 BINs, reflecting frequent cases of deep intraspecific sequence divergence and a few instances of barcode sharing, creating a total of 155 BINs. Two systems for OTU designation, ABGD and BIN, were examined to check the correspondence between current taxonomy and sequence clusters. The BIN system performed better than ABGD in delimiting closely related species, while OTU counts with ABGD were influenced by the value employed for relative gap width. Different species with low or no interspecific divergence may represent cases of unrecognized synonymy, whereas those with high intraspecific divergence require further taxonomic scrutiny as they may involve cryptic diversity. The barcode library developed in this study will also help to advance understanding of relationships among species of Pyraustinae.
Extracted statement — No. of estimated species (Method): BINs
Research field: Ecology and Evolutionary Biology
Title: Insect herbivore faunal diversity among invasive, non-invasive and native Eugenia species: Implications for the enemy release hypothesis
Abstract: Abstract The enemy release hypothesis (ERH) frequently has been invoked to explain the naturalization and spread of introduced species. One ramification of the ERH is that invasive plants sustain less herbivore pressure than do native species. Empirical studies testing the ERH have mostly involved two-way comparisons between invasive introduced plants and their native counterparts in the invaded region. Testing the ERH would be more meaningful if such studies also included introduced non-invasive species because introduced plants, regardless of their abundance or impact, may support a reduced insect herbivore fauna and experience less damage. In this study, we employed a three-way comparison, in which we compared herbivore faunas among native, introduced invasive, and introduced non-invasive plants in the genus Eugenia (Myrtaceae) which all co-occur in South Florida. We observed a total of 25 insect species in 12 families and 6 orders feeding on the six species of Eugenia. Of these insect species, the majority were native (72%), polyphagous (64%), and ectophagous (68%). We found that invasive introduced Eugenia has a similar level of herbivore richness as both the native and the non-invasive introduced Eugenia. However, the numbers and percentages of oligophagous insect species were greatest on the native Eugenia, but they were not different between the invasive and non-invasive introduced Eugenia. One oligophagous endophagous insect has likely shifted from the native to the invasive, but none to the non-invasive Eugenia. In summary, the invasive Eugenia encountered equal, if not greater, herbivore pressure than the non-invasive Eugenia, including from oligophagous and endophagous herbivores. Our data only provided limited support to the ERH. We would not have been able to draw this conclusion without inclusion of the non-invasive Eugenia species in the study.
Extracted statement — Sub-hypothesis: ANI
Research field: Ecology and Evolutionary Biology
Title: Community structure of insect herbivores on introduced and native Solidago plants in Japan
Abstract: We compared community composition, density, and species richness of herbivorous insects on the introduced plant Solidago altissima L. (Asteraceae) and the related native species Solidago virgaurea L. in Japan. We found large differences in community composition on the two Solidago species. Five hemipteran sap feeders were found only on S. altissima. Two of them, the aphid Uroleucon nigrotuberculatum Olive (Hemiptera: Aphididae) and the scale insect Parasaissetia nigra Nietner (Hemiptera: Coccidae), were exotic species, accounting for 62% of the total individuals on S. altissima. These exotic sap feeders mostly determined the difference of community composition on the two plant species. In contrast, the herbivore community on S. virgaurea consisted predominately of five native insects: two lepidopteran leaf chewers and three dipteran leaf miners. Overall species richness did not differ between the plants because the increased species richness of sap feeders was offset by the decreased richness of leaf chewers and leaf miners on S. altissima. The overall density of herbivorous insects was higher on S. altissima than on S. virgaurea, because of the high density of the two exotic sap feeding species on S. altissima. We discuss the importance of analyzing community composition in terms of feeding guilds of insect herbivores for understanding how communities of insect herbivores are organized on introduced plants in novel habitats.
Extracted statement — Sub-hypothesis: ANI
Research field: Ecology and Evolutionary Biology
Title: Parasites and genetic diversity in an invasive bumblebee
Abstract: Biological invasions are facilitated by the global transportation of species and climate change. Given that invasions may cause ecological and economic damage and pose a major threat to biodiversity, understanding the mechanisms behind invasion success is essential. Both the release of non-native populations from natural enemies, such as parasites, and the genetic diversity of these populations may play key roles in their invasion success. We investigated the roles of parasite communities, through enemy release and parasite acquisition, and genetic diversity in the invasion success of the non-native bumblebee, Bombus hypnorum, in the United Kingdom. The invasive B. hypnorum had higher parasite prevalence than most, or all native congeners for two high-impact parasites, probably due to higher susceptibility and parasite acquisition. Consequently parasites had a higher impact on B. hypnorum queens’ survival and colony-founding success than on native species. Bombus hypnorum also had lower functional genetic diversity at the sex-determining locus than native species. Higher parasite prevalence and lower genetic diversity have not prevented the rapid invasion of the United Kingdom by B. hypnorum. These data may inform our understanding of similar invasions by commercial bumblebees around the world. This study suggests that concerns about parasite impacts on the small founding populations common to re-introduction and translocation programs may be less important than currently believed.
Extracted statement — Sub-hypothesis: ANI
Research field: Ecology and Evolutionary Biology
Title: The parasite community of gobiid fishes (Actinopterygii: Gobiidae) from the Lower Volga River region
Abstract: Abstract The parasitic fauna in the lower Volga River basin was investigated for four gobiid species: the nonindigenous monkey goby Neogobius fluviatilis (Pallas, 1814), the round goby N. melanostomus (Pallas, 1814), the Caspian bighead goby Ponticola gorlap (Iljin, 1949), and the tubenose goby Proterorhinus cf. semipellucidus (Kessler, 1877). In total, 19 species of goby parasites were identified, of which two - Bothriocephalus opsariichthydis Yamaguti, 1934 and Nicolla skrjabini (Iwanitzki, 1928) - appeared to have been introduced from other geographic regions. The monkey goby had significantly fewer parasitic species (6), but relatively high levels of infection, in comparison to the native species. Parasitism of the Caspian bighead goby, which is the only predatory fish among the studied gobies, differed from the others according to the results of discriminant analysis. The parasitic fauna of the tubenose goby more closely resembled those of Caspian Sea gobiids, rather than the Black Sea monkey goby.
Extracted statement — Sub-hypothesis: ANI
Research field: Ecology and Evolutionary Biology
Title: Comparison of parasite diversity in native panopeid mud crabs and the invasive Asian shore crab in estuaries of northeast North America
Abstract: Numerous non-indigenous species (NIS) have successfully established in new locales, where they can have large impacts on community and ecosystem structure. A loss of natural enemies, such as parasites, is one mechanism proposed to contribute to that success. While several studies have shown NIS are initially less parasitized than native conspecifics, fewer studies have investigated whether parasite richness changes over time. Moreover, evaluating the role that parasites have in invaded communities requires not only an understanding of the parasite diversity of NIS but also the species with which they interact; yet parasite diversity in native species may be inadequately quantified. In our study, we examined parasite taxonomic richness, infection prevalence, and infection intensity in the invasive Asian shore crab Hemigrapsus sanguineus De Haan, 1835 and two native mud crabs (Panopeus herbstii Milne-Edwards, 1834 and Eurypanopeus depressus Smith, 1869) in estuarine and coastal communities along the east coast of the USA. We also examined reproductive tissue allocation (i.e., the proportion of gonad weight to total body weight) in all three crabs to explore possible differences in infected versus uninfected crabs. We found three parasite taxa infecting H. sanguineus and four taxa infecting mud crabs, including a rhizocephalan castrator (Loxothylacus panopaei) parasitizing E. depressus. Moreover, we documented a significant negative relationship between parasite escape and time for H. sanguineus, including a new 2015 record of a native microphallid trematode. Altogether, there was no significant difference in taxonomic richness among the crab species. Across parasite taxa, H. sanguineus demonstrated significantly lower infection prevalence compared to P. herbstii; yet a multivariate analysis of taxa-specific prevalence demonstrated no significant differences among crabs. Finally, infected P. herbstii had the highest proportion of gonad weight to total body weight. Our study finds some evidence for lower infection prevalence in the non-native versus the native hosts. However, we also demonstrate that parasite escape can lessen with time. Our work has implications for the understanding of the potential influence parasites may have on the future success of NIS in introduced regions.
Extracted statement — Sub-hypothesis: ANI
Research field: Ecology and Evolutionary Biology
Title: Natural-enemy release facilitates habitat expansion of the invasive tropical shrub Clidemia hirta
Abstract: Nonnative, invasive plant species often increase in growth, abundance, or habitat distribution in their introduced ranges. The enemy-release hypothesis, proposed to account for these changes, posits that herbivores and pathogens (natural enemies) limit growth or survival of plants in native areas, that natural enemies have less impact in the introduced than in the native range, and that the release from natural-enemy regulation in areas of introduction accounts in part for observed changes in plant abundance. We tested experimentally the enemy-release hypothesis with the invasive neotropical shrub Clidemia hirta (L.) D. Don (Melastomataceae). Clidemia hirta does not occur in forest in its native range but is a vigorous invader of tropical forest in its introduced range. Therefore, we tested the specific prediction that release from natural enemies has contributed to its ex- panded habitat distribution. We planted C. hirta into understory and open habitats where it is native (Costa Rica) and where it has been introduced (Hawaii) and applied pesticides to examine the effects of fungal pathogen and insect herbivore exclusion. In understory sites in Costa Rica, C. hirta survival increased by 12% if sprayed with insecticide, 19% with fungicide, and 41% with both insecticide and fungicide compared to control plants sprayed only with water. Exclusion of natural enemies had no effect on survival in open sites in Costa Rica or in either habitat in Hawaii. Fungicide application promoted relative growth rates of plants that survived to the end of the experiment in both habitats of Costa Rica but not in Hawaii, suggesting that fungal pathogens only limit growth of C. hirta where it is native. Galls, stem borers, weevils, and leaf rollers were prevalent in Costa Rica but absent in Hawaii. In addition, the standing percentage of leaf area missing on plants in the control (water only) treatment was five times greater on plants in Costa Rica than in Hawaii and did not differ between habitats. The results from this study suggest that significant effects of herbivores and fungal pathogens may be limited to particular habitats. For Clidemia hirta, its absence from forest understory in its native range likely results in part from the strong pressures of natural enemies. Its invasion into Hawaiian forests is apparently aided by a release from these herbivores and pathogens.
Extracted statement — Sub-hypothesis: HAD
Research field: Ecology and Evolutionary Biology
Title: The invasive shrub Buddleja davidii performs better in its introduced range
Abstract: It is commonly assumed that invasive plants grow more vigorously in their introduced than in their native range, which is then attributed to release from natural enemies or to microevolutionary changes, or both. However, few studies have tested this assumption by comparing the performance of invasive species in their native vs. introduced ranges. Here, we studied abundance, growth, reproduction, and herbivory in 10 native Chinese and 10 invasive German populations of the invasive shrub Buddleja davidii (Scrophulariaceae; butterfly bush). We found strong evidence for increased plant vigour in the introduced range: plants in invasive populations were significantly taller and had thicker stems, larger inflorescences, and heavier seeds than plants in native populations. These differences in plant performance could not be explained by a more benign climate in the introduced range. Since leaf herbivory was substantially reduced in invasive populations, our data rather suggest that escape from natural enemies, associated with increased plant growth and reproduction, contributes to the invasion success of B. davidii in Central Europe.
Extracted statement — Sub-hypothesis: HAD
Research field: Ecology and Evolutionary Biology
Title: Testing hypotheses for exotic plant success: parallel experiments in the native and introduced ranges
Abstract: A central question in ecology concerns how some exotic plants that occur at low densities in their native range are able to attain much higher densities where they are introduced. This question has remained unresolved in part due to a lack of experiments that assess factors that affect the population growth or abundance of plants in both ranges. We tested two hypotheses for exotic plant success: escape from specialist insect herbivores and a greater response to disturbance in the introduced range. Within three introduced populations in Montana, USA, and three native populations in Germany, we experimentally manipulated insect herbivore pressure and created small-scale disturbances to determine how these factors affect the performance of houndstongue (Cynoglossum officinale), a widespread exotic in western North America. Herbivores reduced plant size and fecundity in the native range but had little effect on plant performance in the introduced range. Small-scale experimental disturbances enhanced seedling recruitment in both ranges, but subsequent seedling survival was more positively affected by disturbance in the introduced range. We combined these experimental results with demographic data from each population to parameterize integral projection population models to assess how enemy escape and disturbance might differentially influence C. officinale in each range. Model results suggest that escape from specialist insects would lead to only slight increases in the growth rate (lambda) of introduced populations. In contrast, the larger response to disturbance in the introduced vs. native range had much greater positive effects on lambda. These results together suggest that, at least in the regions where the experiments were performed, the differences in response to small disturbances by C. officinale contribute more to higher abundance in the introduced range compared to at home. Despite the challenges of conducting experiments on a wide biogeographic scale and the logistical constraints of adequately sampling populations within a range, this approach is a critical step forward to understanding the success of exotic plants.
Extracted statement — Sub-hypothesis: HAD
Research field: Ecology and Evolutionary Biology
Title: Biogeographic comparisons of herbivore attack, growth and impact of Japanese knotweed between Japan and France
Abstract: To shed light on the process of how exotic species become invasive, it is necessary to study them both in their native and non‐native ranges. Our intent was to measure differences in herbivory, plant growth and the impact on other species in Fallopia japonica in its native and non‐native ranges. We performed a cross‐range full descriptive, field study in Japan (native range) and France (non‐native range). We assessed DNA ploidy levels, the presence of phytophagous enemies, the amount of leaf damage, several growth parameters and the co‐occurrence of Fallopia japonica with other plant species of herbaceous communities. Invasive Fallopia japonica plants were all octoploid, a ploidy level we did not encounter in the native range, where plants were all tetraploid. Octoploids in France harboured far less phytophagous enemies, suffered much lower levels of herbivory, grew larger and had a much stronger impact on plant communities than tetraploid conspecifics in the native range in Japan. Our data confirm that Fallopia japonica performs better – plant vigour and dominance in the herbaceous community – in its non‐native than its native range. Because we could not find octoploids in the native range, we cannot separate the effects of differences in ploidy from other biogeographic factors. To go further, common garden experiments would now be needed to disentangle the proper role of each factor, taking into account the ploidy levels of plants in their native and non‐native ranges. Synthesis. As the process by which invasive plants successfully invade ecosystems in their non‐native range is probably multifactorial in most cases, examining several components – plant growth, herbivory load, impact on recipient systems – of plant invasions through biogeographic comparisons is important. Our study contributes towards filling this gap in the research, and it is hoped that this method will spread in invasion ecology, making such an approach more common.
Extracted statement — Sub-hypothesis: HAD