Akwai jami'a a birnin Maiduguri wanda ake kira da Jami'ar Maiduguri. Jami'an yana kan Bama Road. Kosakosen da ake karantarwa a jami'ar sun hada da ilmi aikin likita, ilmin injiniyarin, ilmin watsa labarai, ilmin harshen turanci da kuma ilmin addini da al'adu. Jami'ar Maiduguri tana da Asibitin koyarwa na Univesity of Maiduguri Teaching Hospital. Sa'annan akwai makarantar politeknik a Maiduguri mai Suna Ramat Polytechnic. Sauran Makarantu zirfin ilmi sun hada da College of Agriculture, Sir Kashim College of Education da Mohammed Goni College of Islamic and Legal Studies. Sa'annan akwai makarantun sakandare da dama a Maiduguri.