Maiduguri tana da filin jirgin sama wadda ake kira Filin jirgin sama a Maiduguri. Jiragen sama kan tashi kowane rana daga Maiduguri zuwa Abuja da Lagos. Akwai kuma jiragen da suke zirga zirgan daukan Musulmi zuwa Saudi Arabia lokacin aikin Hajji. Da fannin jiragen 'kasa kuwa Maiguri tana da Makeken tashan jirgin kasa wanda aka fi sani da Railway Terminus Maiduguri. Tashan jirgin kasan tana dab da inda rikicen Boko Hram ya Barke a 2009 a unguwar goni damgari bayan kwatas. Daukan shanu daga Maiduguri zuwa kudancin Najeriya yana daya daga cikin manyan dilalan kafa layin jirgin 'kasa a Maiduguri.