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README.md

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+---
+license: other
+pretty_name: SKEMPI v2
+size_categories:
+  - 1K<n<10K
+task_categories:
+  - other
+language:
+  - en
+tags:
+  - biology
+  - proteins
+  - binding-affinity
+  - mutation
+  - skempi
+  - jsonl
+---
+
+# SKEMPI v2
+
+SKEMPI v2 protein-protein binding affinity mutation dataset, normalized to newline-delimited JSON with row-level provenance.
+
+Processed and uploaded by the [MegaData](https://github.com/) post-download pipeline
+(internal repo). Original source: <https://life.bsc.es/pid/skempi2>.
+
+## Statistics
+
+| | |
+|---|---|
+| Table files | 1 |
+| Total rows | 7,085 |
+| Total bytes | 5.86 MiB (6,148,969) |
+
+## Tables
+
+| Table | Rows | Bytes |
+|---|---:|---:|
+| `labeled_skempi2_skempi_v2.csv.jsonl` | 7,085 | 5.86 MiB |
+
+## Layout
+
+```
+.
+├── _MANIFEST.json                 # aggregate manifest (per-table counts)
+└── tables/<source_slug>.jsonl    # normalized rows (one JSON object per line)
+```
+
+Each line in a `tables/*.jsonl` file is a JSON object with at least
+`dataset_id`, `row` (the raw upstream row), `row_index`, and `source_file`
+fields, so every row carries its upstream provenance.
+
+## Loading
+
+```bash
+hf download LiteFold/SKEMPI2 --repo-type dataset --local-dir ./skempi2
+```
+
+Programmatic streaming:
+
+```python
+import json
+from pathlib import Path
+from huggingface_hub import snapshot_download
+
+local = snapshot_download(repo_id="LiteFold/SKEMPI2", repo_type="dataset")
+for jsonl in sorted(Path(local, "tables").glob("*.jsonl")):
+    with jsonl.open() as f:
+        for line in f:
+            row = json.loads(line)
+            ...  # row["row"] is the upstream record
+```
+
+## License
+
+See upstream SKEMPI v2 license.
+
+## Citation
+
+> Jankauskaite J, et al. SKEMPI 2.0: an updated benchmark of changes in protein-protein binding energy, kinetics and thermodynamics upon mutation. Bioinformatics, 35(3):462-469, 2019.
+
+## Provenance
+
+Built from the local manifest entry `skempi2` of `manifests/atlas_download_plan.json`.
+Pipeline source: `megadata-post normalize --dataset skempi2 --tables-only`.

_MANIFEST.json

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+{
+  "category": "labeled",
+  "dataset_id": "skempi2",
+  "format": "jsonl table rows with provenance",
+  "tables": [
+    {
+      "bytes": 6148969,
+      "category": "labeled",
+      "dataset_id": "skempi2",
+      "output_file": "data/processed/labeled/skempi2/tables/labeled_skempi2_skempi_v2.csv.jsonl",
+      "rows": 7085,
+      "source_file": "labeled/skempi2/skempi_v2.csv",
+      "status": "regenerated"
+    }
+  ],
+  "total_rows": 7085
+}