LLukas22/scidocs huggingface dataset:
Automatic Texts Summarization: Current State of the Art

To facilitate the task of reading and searching information, it became necessary to find a way to reduce the size of documents without affecting the content. The solution is in Automatic text summarization system, it allows, from an input text to produce another smaller and more condensed without losing relevant data and meaning conveyed by the original text. The research works carried out on this area have experienced lately strong progress especially in English language. However, researches in Arabic text summarization are very few and are still in their beginning. In this paper we expose a literature review of recent techniques and works on automatic text summarization field research, and then we focus our discussion on some works concerning automatic text summarization in some languages. We will discuss also some of the main problems that affect the quality of automatic text summarization systems. © 2015 AESS Publications. All Rights Reserved.
Toxicity of Hexavalent Chromium and Its Reduction by Bacteria Isolated from Soil Contaminated with Tannery Waste

 An Arthrobacter sp. and a Bacillus sp., isolated from a long-term tannery waste contaminated soil, were examined for their tolerance to hexavalent chromium [Cr(VI)] and their ability to reduce Cr(VI) to Cr(III), a detoxification process in cell suspensions and cell extracts. Both bacteria tolerated Cr(VI) at 100 mg/ml on a minimal salts agar medium supplemented with 0.5% glucose, but only Arthrobacter could grow in liquid medium at this concentration. Arthrobacter sp. could reduce Cr(VI) up to 50 μg/ml, while Bacillus sp. was not able to reduce Cr(VI) beyond 20 μg/ml. Arthrobacter sp. was distinctly superior to the Bacillus sp. in terms of their Cr(VI)-reducing ability and resistance to Cr(VI). Assays with permeabilized (treated with toluene or Triton X 100) cells and crude extracts demonstrated that the Cr(VI) reduction was mainly associated with the soluble protein fraction of the cell. Arthrobacter sp. has a great potential for bioremediation of Cr(VI)-containing waste.
Algebraic tensegrity form-finding

This paper concerns the form-finding problem for general and symmetric tensegrity structures with shape constraints. A number of different geometries are treated and several fundamental properties of tensegrity structures are identified that simplify the form-finding problem. The concept of a tensegrity invariance (similarity) transformation is defined and it is shown that tensegrity equilibrium is preserved under affine node position transformations. This result provides the basis for a new tensegrity form-finding tool. The generality of the problem formulation makes it suitable for the automated generation of the equations and their derivatives. State-of-the-art numerical algorithms are applied to solve several example problems. Examples are given for tensegrity plates, shell-class symmetric tensegrity structures and structures generated by applying similarity transformation. 2005 Elsevier Ltd. All rights reserved.
Hardware compilation of application-specific memory-access interconnect

A major obstacle to successful high-level synthesis (HLS) of large-scale application-specified integrated circuit systems is the presence of memory accesses to a shared-memory subsystem. The latency to access memory is often not statically predictable, which creates problems for scheduling operations dependent on memory reads. More fundamental is that dependences between accesses may not be statically provable (e.g., if the specification language permits pointers), which introduces memory-consistency problems. Addressing these issues with static scheduling results in overly conservative circuits, and thus, most state-of-the-art HLS tools limit memory systems to those that have predictable latencies and limit programmers to specifications that forbid arbitrary memory-reference patterns. A new HLS framework for the synthesis and optimization of memory accesses (SOMA) is presented. SOMA enables specifications to include arbitrary memory references (e.g., pointers) and allows the memory system to incorporate features that might cause the latency of a memory access to vary dynamically. This results in raising the level of abstraction in the input specification, enabling faster design times. SOMA synthesizes a memory access network (MAN) architecture that facilitates dynamic scheduling and ordering of memory accesses. The paper describes a basic MAN construction technique that illustrates how dynamic ordering helps in efficiently maintaining memory consistency and how dynamic scheduling helps alleviate the variable-latency problem. Then, it is shown how static analysis of the access patterns can be used to optimize the MAN. One optimization changes the MAN interconnect topology to increase concurrence. A second optimization reduces the synchronization overhead necessary to maintain memory consistency. Postlayout experiments demonstrate that SOMA's application-specific MAN construction significantly improves power and performance for a range of benchmarks.
A Conversation About Radicalism in Contemporary Greece

B ecause of its economic issues, Greece has been often in the news during the past several years. But the news often offers only superficial accounts of what is happening in Greek society. In the summer of 2015, on a warm day in Athens, I joined Dr. Vassiliki Georgiadou (VG), (political science, Panteion University); Dr. Lamprini Rori (LR), a Marie Curie fellow (Bournemouth University); and Dr. Despina Papadimitriou (DP), (history, Panteion University) in a faculty office in Panteion University to talk about radicalism in contemporary Greek society and how various kinds of radicalism are related to economic, social, and political upheaval. As research collaborators and coauthors, their recent research, particularly that of Dr. Georgiadou, has focused on the right-wing group Chryssa Avgi, or Golden Dawn, and in the following conversation they discuss not only this group but also their broader assessment of the connections between political and economic unrest, and they offer some surprising observations about radicalism of the left and the right “on the ground” in contemporary Greece. ARTHUR VERSLUIS
Percutaneous left atrial appendage closure for stroke prophylaxis in patients with atrial fibrillation: 2.3-Year Follow-up of the PROTECT AF (Watchman Left Atrial Appendage System for Embolic Protection in Patients with Atrial Fibrillation) Trial.

BACKGROUND
The multicenter PROTECT AF study (Watchman Left Atrial Appendage System for Embolic Protection in Patients With Atrial Fibrillation) was conducted to determine whether percutaneous left atrial appendage closure with a filter device (Watchman) was noninferior to warfarin for stroke prevention in atrial fibrillation.


METHODS AND RESULTS
Patients (n=707) with nonvalvular atrial fibrillation and at least 1 risk factor (age >75 years, hypertension, heart failure, diabetes, or prior stroke/transient ischemic attack) were randomized to either the Watchman device (n=463) or continued warfarin (n=244) in a 2:1 ratio. After device implantation, warfarin was continued for ≈45 days, followed by clopidogrel for 4.5 months and lifelong aspirin. Study discontinuation rates were 15.3% (71/463) and 22.5% (55/244) for the Watchman and warfarin groups, respectively. The time in therapeutic range for the warfarin group was 66%. The composite primary efficacy end point included stroke, systemic embolism, and cardiovascular death, and the primary analysis was by intention to treat. After 1588 patient-years of follow-up (mean 2.3±1.1 years), the primary efficacy event rates were 3.0% and 4.3% (percent per 100 patient-years) in the Watchman and warfarin groups, respectively (relative risk, 0.71; 95% confidence interval, 0.44%-1.30% per year), which met the criteria for noninferiority (probability of noninferiority >0.999). There were more primary safety events in the Watchman group (5.5% per year; 95% confidence interval, 4.2%-7.1% per year) than in the control group (3.6% per year; 95% confidence interval, 2.2%-5.3% per year; relative risk, 1.53; 95% confidence interval, 0.95-2.70).


CONCLUSIONS
The "local" strategy of left atrial appendage closure is noninferior to "systemic" anticoagulation with warfarin. PROTECT AF has, for the first time, implicated the left atrial appendage in the pathogenesis of stroke in atrial fibrillation.


CLINICAL TRIAL REGISTRATION
: URL: http://www.clinicaltrials.gov. Unique identifier: NCT00129545.
Increasing X-ray image interpretation competency of cargo security screeners

X-ray screening of containers and unit load devices in the area of cargo shipping is becoming an essential and common feature at ports and airports all over the world. The detection of prohibited items in X-ray images is a challenging task for screening officers as they need to know which items are prohibited and what they look like in X-ray images. The main aim of this study was to investigate whether X-ray image interpretation competency of cargo security screeners can be increased by computer-based training. More specifically, effects of training were investigated by conducting tests before training started and after approximately three months of training. Moreover, it was examined whether viewing X-ray images in pseudo color would lead to a better detection performance compared to when X-ray images are shown in greyscale. Recurrent computer-based training resulted in large performance increases after three months. No significant difference in detection performance could be found for tests when using X-ray images in greyscale vs. pseudo color. Relevance to industry: Cargo X-ray screening is becoming a common feature at ports and airports. The identification and detection of prohibited items in X-ray images highly depends on human operators and their competences regarding X-ray image interpretation. Thus, research on appropriate training methods and enhancements of the human factor are essential to achieve and maintain high levels of security. 2014 Elsevier B.V. All rights reserved.
Quality improvement guidelines for percutaneous drainage/aspiration of abscess and fluid collections.

THE membership of the Society of Interventional Radiology (SIR) Standards of Practice Committee represents experts in a broad spectrum of interventional procedures from both the private and academic sectors of medicine. Generally Standards of Practice Committee members dedicate the vast majority of their professional time to performing interventional procedures; as such they represent a valid broad expert constituency of the subject matter under consideration for standards production. Technical documents specifying the exact consensus and literature review
Direct Torque Control of Induction Motors Utilizing Three-Level Voltage Source Inverters

A new control strategy for induction motors based on direct torque control is presented which employs a three-level inverter instead of the standard two-level inverter. The controller is designed to achieve a torque ripple reduction by taking advantage of the increase in the number of inverter states available in a three-level inverter. The harmonic distortion in the stator currents and the switching frequency of the semiconductor devices are also reduced in the new control system presented.
Translation and validation of a Chinese language version of the Early Childhood Oral Health Impact Scale (ECOHIS).

OBJECTIVE
This study aimed to adapt the Early Childhood Oral Health Impact Scale (ECOHIS) for pre-school children in a Chinese speaking community and to investigate its psychometric properties (validity and reliability).


METHODS
A Chinese language version of the ECOHIS was derived through a forward-backward translation and tested for face and content validity among a focus group. A convenient sample of pre-school children (n = 111) was recruited (including a sub-sample with early childhood caries and caries-free children). Parents of the children self-completed the derived Chinese-ECOHIS measure. Validity of the measure was assessed by investigating the relationship between dental caries status and Chinese-ECOHIS scores (construct and criterion validity). A sub-sample of the parents repeated the ratings of the measure to enable reliability assessments. Both internal and test-retest reliability were determined.


RESULTS
A Chinese version of ECOHIS was derived with minor modification to the original version. Chinese-ECOHIS scores were associated with children's caries experience (dmft) (r = 0.66, P < 0.05) supporting convergent validity. In addition, variations in ECOHIS scores were apparent with respect to caries and caries-free groups (P < 0.001), supporting the ability to distinguish between patient groups. Cronbach's alpha values (internal reliability) for total ECOHIS score were 0.91 and intraclass correlation coefficient value (test-retest reliability) was 0.64.


CONCLUSIONS
A Chinese version of the ECOHIS was developed and demonstrated acceptable validity and reliability. These findings can enable assessments of pre-school child oral health-related quality of life in Chinese speaking communities.
Phase I study of tanespimycin in combination with bortezomib in patients with advanced solid malignancies

Purpose To determine the maximum tolerated dose (MTD) and characterize the dose-limiting toxicities (DLT) of tanespimycin when given in combination with bortezomib. Experimental design Phase I dose-escalating trial using a standard cohort “3+3” design performed in patients with advanced solid tumors. Patients were given tanespimycin and bortezomib twice weekly for 2 weeks in a 3 week cycle (days 1, 4, 8, 11 every 21 days). Results Seventeen patients were enrolled in this study, fifteen were evaluable for toxicity, and nine patients were evaluable for tumor response. The MTD was 250 mg/m2 of tanespimycin and 1.0 mg/m2 of bortezomib when used in combination. DLTs of abdominal pain (13 %), complete atrioventricular block (7 %), fatigue (7 %), encephalopathy (7 %), anorexia (7 %), hyponatremia (7 %), hypoxia (7 %), and acidosis (7 %) were observed. There were no objective responses. One patient had stable disease. Conclusions The recommended phase II dose for twice weekly 17-AAG and PS341 are 250 mg/m2 and 1.0 mg/m2, respectively, on days 1, 4, 8 and 11 of a 21 day cycle.
Adverse Drug Event Discovery Using Biomedical Literature: A Big Data Neural Network Adventure

BACKGROUND
The study of adverse drug events (ADEs) is a tenured topic in medical literature. In recent years, increasing numbers of scientific articles and health-related social media posts have been generated and shared daily, albeit with very limited use for ADE study and with little known about the content with respect to ADEs.


OBJECTIVE
The aim of this study was to develop a big data analytics strategy that mines the content of scientific articles and health-related Web-based social media to detect and identify ADEs.


METHODS
We analyzed the following two data sources: (1) biomedical articles and (2) health-related social media blog posts. We developed an intelligent and scalable text mining solution on big data infrastructures composed of Apache Spark, natural language processing, and machine learning. This was combined with an Elasticsearch No-SQL distributed database to explore and visualize ADEs.


RESULTS
The accuracy, precision, recall, and area under receiver operating characteristic of the system were 92.7%, 93.6%, 93.0%, and 0.905, respectively, and showed better results in comparison with traditional approaches in the literature. This work not only detected and classified ADE sentences from big data biomedical literature but also scientifically visualized ADE interactions.


CONCLUSIONS
To the best of our knowledge, this work is the first to investigate a big data machine learning strategy for ADE discovery on massive datasets downloaded from PubMed Central and social media. This contribution illustrates possible capacities in big data biomedical text analysis using advanced computational methods with real-time update from new data published on a daily basis.
Investigation of Flotation Parameters for Copper Recovery from Enargite and Chalcopyrite Mixed Ore

A flotation pre-treatment study for the separation of enargite (Cu3AsS4) from chalcopyrite (CuFeS2) ores of different origins was investigated in this work. The copper ore bearing enargite mineral contained 5.87mass% As and 16.50mass% Cu while the chalcopyrite bearing ore contained 0.32mass% As and 21.63mass% Cu. The two ore samples were mixed at 7 : 3 (enargite : chalcopyrite) by weight ratio to prepare a mixed ore sample with As content at 3.16 and 18.25mass% Cu for the flotation study. Effect of particle size, slurry pH, flotation time, collector type, collector addition or dosage and depressants were investigated to evaluate efficiency of enargite separation from chalcopyrite and recovery of both minerals as separate concentrates. For enargite single ore flotation, the 38­75μm size fraction showed that over 98% of enargite was selectively recovered within 5min at slurry pH of 4 and As content in the final tailings was reduced to 0.22mass%. In mix ore (enargite + chalcopyrite) flotation, 97% of enargite was first removed at pH 4 followed by chalcopyrite flotation at pH 8, and over 95% recovery was achieved in 15min flotation time. The As content in the final tailings was reduced to 0.1mass%. [doi:10.2320/matertrans.M2011354]
Teaching Life-Saving Manoeuvres in Primary School

Introduction. In the event of sudden cardiac arrest (SCA) early intervention provided by a layperson can be life-saving. Teaching first aid in primary school may increase the lifelong ability and motivation of young people to take action in an emergency. Objective. The aim of this article is to report a training experience on BLSD (Basic Life Support and Defibrillation) designed for a group of pupils in an Italian primary school, with assessment of its effectiveness at a distance. Methods. The assessment was carried out using a multiple choice questionnaire on a sample of 130 pupils aged 11-12, 62 trained in BLSD and 68 as a control group. The trained group also performed an emergency simulation to assess their learning of practical skills. Results. Using the t test, significant differences emerged in the questionnaire scores between the case-control group. The results of the skill test were positive, even for the most difficult manoeuvres such as opening airways, assessing breathing, or using an AED (Automated External Defibrillator). Conclusion. Although there are still some open questions regarding the ability to retain these skills in the medium/long term, the study shows that life-saving manoeuvres can be effectively taught to primary school pupils.
Biodiversity in the city: key challenges for urban green space management

Cities play important roles in the conservation of global biodiversity, particularly through the planning and management of urban green spaces (UGS). However, UGS management is subject to a complex assortment of interacting social, cultural, and economic factors, including governance, economics, social networks, multiple stakeholders, individual preferences, and social constraints. To help deliver more effective conservation outcomes in cities, we identify major challenges to managing biodiversity in UGS and important topics warranting further investigation. Biodiversity within UGS must be managed at multiple scales while accounting for various socioeconomic and cultural influences. Although the environmental consequences of management activities to enhance urban biodiversity are now beginning to be addressed, additional research and practical management strategies must be developed to balance human needs and perceptions while maintaining ecological processes.
QTLs affecting kernel size and shape in a two-rowed by six-rowed barley cross

The suitability of barley (Hordeum vulgare L.) grain for malting depends on many criteria, including the size, shape and uniformity of the kernels. Here, image analysis was used to measure kernel size and shape attributes (area, perimeter, length, width, F-circle and F-shape) in grain samples of 140 doubled-haploid lines from a two-rowed (cv Harrington) by six-rowed (cv Morex) barley cross. Interval mapping was used to map quantitative trait loci (QTLs) affecting the means and within-sample standard deviations of these attributes using a 107-marker genome map. Regions affecting one or more kernel size and shape traits were detected on all seven chromosomes. These included one near the vrs1 locus on chromosome 2 and one near the int-c locus on chromosome 4. Some, but not all, of the QTLs exhibited interactions with the environment and some QTLs affected the within-sample variability of kernel size and shape without affecting average kernel size and shape. When QTL analysis was conducted using data from only the two-rowed lines, the region on chromosome 2 was not detected but QTLs were detected elsewhere in the genome, including some that had not been detected in the analysis of the whole population. Analysis of only the six-rowed lines did not detect any QTLs affecting kernel size and shape attributes. QTL alleles that made kernels larger and/or rounder also tended to improve malt quality and QTL alleles that increased the variability of kernel size were associated with poor malt quality.
EVALUATION OF EFFECTIVENESS IN A NOVEL WOUND HEALING OINTMENT-CROCODILE OIL BURN OINTMENT

BACKGROUND
Crocodile oil and its products are used as ointments for burns and scalds in traditional medicines. A new ointment formulation - crocodile oil burn ointment (COBO) was developed to provide more efficient wound healing activity. The purpose of the study was to evaluate the burn healing efficacy of this new formulation by employing deep second-degree burns in a Wistar rat model. The analgesic and anti-inflammatory activities of COBO were also studied to provide some evidences for its further use.


MATERIALS AND METHODS
The wound healing potential of this formulation was evaluated by employing a deep second-degree burn rat model and the efficiency was comparatively assessed against a reference ointment - (1% wt/wt) silver sulfadiazine (SSD). After 28 days, the animals were euthanized and the wounds were removed for transversal and longitudinal histological studies. Acetic acid-induced writhing in mice was used to evaluate the analgesic activity and its anti-inflammatory activity was observed in xylene -induced edema in mice.


RESULTS
COBO enhanced the burn wound healing (20.5±1.3 d) as indicated by significant decrease in wound closure time compared with the burn control (25.0±2.16 d) (P<0.01). Hair follicles played an importance role in the physiological functions of the skin, and their growth in the wound could be revealed for the skin regeneration situation. Histological results showed that the hair follicles were well-distributed in the post-burn skin of COBO treatment group, and the amounts of total, active, primary and secondary hair follicles in post-burn 28-day skin of COBO treatment groups were more than those in burn control and SSD groups. On the other hand, the analgesic and anti-inflammatory activity of COBO were much better than those of control group, while they were very close to those of moist exposed burn ointment (MEBO).


CONCLUSIONS
COBO accelerated wound closure, reduced inflammation, and had analgesic effects compared with SSD in deep second degree rat burn model. These findings suggest that COBO would be a potential therapy for treating human burns. Abbreviations: COBO, crocodile oil burn ointment; SSD, silver sulfadiazine; MEBO, moist exposed burn ointment; TCM, traditional Chinese medicine; CHM, Chinese herbal medicine; GC-MS, gas chromatography-mass spectrometry.