Datasets:

JetBrains-Research

/

lca-module-summarization

like 0

• "numpy.dtype",
• "numpy.core.multiarray._reconstruct",
• "numpy.ndarray",
• "builtins.str",
• "simtk.openmm.app.topology.Bond",
• "oechem.OEMol",
• "numpy.core.multiarray._reconstruct",
• "mdtraj.core.element.oxygen",
• "mdtraj.core.topology.Residue",
• "mdtraj.core.element.sodium",
• "simtk.openmm.openmm.System",
• "simtk.openmm.openmm.HarmonicAngleForce",
• "simtk.openmm.openmm.CustomAngleForce",
• "simtk.unit.quantity.Quantity",
• "mdtraj.core.topology.Topology",
• "simtk.openmm.openmm.CustomNonbondedForce",
• "simtk.openmm.openmm.CustomTorsionForce",
• "simtk.openmm.openmm.CustomBondForce",
• "mdtraj.core.topology.Chain",
• "simtk.openmm.vec3.Vec3",
• "numpy.dtype",
• "simtk.openmm.openmm.MonteCarloBarostat",
• "simtk.openmm.app.topology.Residue",
• "simtk.openmm.app.element.get_by_symbol",
• "simtk.unit.basedimension.BaseDimension",
• "simtk.openmm.openmm.HarmonicBondForce",
• "simtk.openmm.app.topology.Topology",
• "perses.rjmc.topology_proposal._get_networkx_molecule",
• "simtk.openmm.app.topology.Chain",
• "perses.annihilation.relative.HybridTopologyFactory",
• "numpy.ndarray",
• "simtk.openmm.openmm.NonbondedForce",
• "simtk.unit.unit.ScaledUnit",
• "mdtraj.core.topology.Atom",
• "simtk.openmm.openmm.PeriodicTorsionForce",
• "perses.rjmc.topology_proposal.TopologyProposal",
• "functools.partial",
• "mdtraj.core.element.chlorine",
• "mdtraj.core.topology.Bond",
• "simtk.openmm.app.topology.Atom",
• "mdtraj.core.element.nitrogen",
• "mdtraj.core.element.hydrogen",
• "mdtraj.core.element.carbon",
• "simtk.unit.unit.Unit",
• "simtk.unit.baseunit.BaseUnit",
• "numpy.ndarray",
• "numpy.dtype",
• "numpy.core.multiarray._reconstruct",
• "simtk.unit.basedimension.BaseDimension",
• "simtk.unit.unit.Unit",
• "simtk.unit.baseunit.BaseUnit",
• "simtk.unit.quantity.Quantity",
• "simtk.openmm.app.topology.Chain",
• "simtk.openmm.app.topology.Bond",
• "simtk.openmm.app.topology.Atom",
• "simtk.openmm.app.topology.Residue",
• "simtk.openmm.app.element.get_by_symbol",
• "simtk.openmm.app.topology.Topology",
• "simtk.openmm.openmm.System",
• "simtk.openmm.app.forcefield.NonbondedGenerator",
• "openforcefield.typing.engines.smirnoff.parameters.ImproperTorsionHandler",
• "openforcefield.typing.engines.smirnoff.parameters.BondHandler",
• "openforcefield.typing.engines.smirnoff.parameters.IndexedParameterAttribute",
• "openforcefield.utils.collections.ValidatedList",
• "simtk.unit.quantity.Quantity",
• "simtk.openmm.app.forcefield.HarmonicAngleGenerator",
• "collections.OrderedDict",
• "openforcefield.typing.engines.smirnoff.parameters.ConstraintHandler",
• "openforcefield.typing.engines.smirnoff.parameters.AngleHandler",
• "openforcefield.typing.engines.smirnoff.parameters.GBSAHandler",
• "simtk.unit.basedimension.BaseDimension",
• "openforcefield.typing.engines.smirnoff.io.XMLParameterIOHandler",
• "simtk.openmm.app.forcefield.PeriodicTorsionGenerator",
• "simtk.openmm.app.forcefield.PME",
• "simtk.openmm.app.forcefield.ForceField",
• "simtk.unit.unit.Unit",
• "simtk.unit.unit.ScaledUnit",
• "openforcefield.typing.engines.smirnoff.parameters.ElectrostaticsHandler",
• "simtk.openmm.app.forcefield.HarmonicBondGenerator",
• "builtins.list",
• "builtins.set",
• "simtk.openmm.app.forcefield.PeriodicTorsion",
• "openforcefield.typing.engines.smirnoff.parameters.ProperTorsionHandler",
• "openforcefield.typing.engines.smirnoff.parameters.ParameterAttribute",
• "simtk.unit.baseunit.BaseUnit",
• "simtk.openmm.app.forcefield.HBonds",
• "openforcefield.typing.engines.smirnoff.parameters.ParameterList",
• "openforcefield.typing.engines.smirnoff.parameters.ChargeIncrementModelHandler",
• "openforcefield.typing.engines.smirnoff.parameters.LibraryChargeHandler",
• "builtins.int",
• "functools.partial",
• "builtins.float",
• "openforcefield.typing.engines.smirnoff.parameters.vdWHandler",
• "builtins.getattr",
• "openforcefield.typing.engines.smirnoff.parameters.ToolkitAM1BCCHandler",
• "openforcefield.typing.engines.smirnoff.forcefield.ForceField",
• "simtk.openmm.app.forcefield.NoCutoff",
• "collections.defaultdict",
• "simtk.openmm.app.element.get_by_symbol",
• "openmmforcefields.generators.template_generators.SMIRNOFFTemplateGenerator",
• "openmmforcefields.generators.system_generators.SystemGenerator",
• "numpy.dtype",
• "numpy.core.multiarray._reconstruct",
• "numpy.ndarray",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage",
• "torch._utils._rebuild_tensor_v2",
• "collections.OrderedDict",
• "torch.FloatStorage"

How to fix it?