refactor: naming/task type

agro-nt-tasks.py

@@ -35,19 +35,23 @@ predicting regulatory features, RNA processing sites, and gene expression values
 # TODO: Add the licence for the dataset here if you can find it
 _LICENSE = ""
 
-_TASKS = ['poly_a',
-          'splice_site'
-          'lncrna',
-          'chromatin_access'
-          'promoter_strength',
-          'gene_expression',
-          ]
+_TASK_NAMES =  ['poly_a|arabidopsis_thaliana',
+                'poly_a|oryza_sativa_indica_group',
+                'poly_a|trifolium_pratense',
+                'poly_a|medicago_truncatula',
+                'poly_a|chlamydomonas_reinhardtii',
+                'poly_a|oryza_sativa_japonica_group']
+
+
+_TASK_NAME_TO_TYPE = {'poly_a':'binary',
+                      'lncrna':'binary',
+                      'splice_site':'binary',}
 
 
 class AgroNtTasksConfig(datasets.BuilderConfig):
     """BuilderConfig for the Agro NT supervised learning tasks dataset."""
 
-    def __init__(self, *args, task: str, **kwargs):
+    def __init__(self, *args, task_name: str, **kwargs):
         """BuilderConfig downstream tasks dataset.
         Args:
             task (:obj:`str`): Task name.
@@ -55,27 +59,31 @@ class AgroNtTasksConfig(datasets.BuilderConfig):
         """
         super().__init__(
             *args,
-            name=f"{task}",
+            name=f"{task_name}",
             **kwargs,
         )
-        self.task = task
+        self.task,self.name = task_name.split("|")
+        self.task_type = _TASK_NAME_TO_TYPE[self.task]
+
 
 class AgroNtTasks(datasets.GeneratorBasedBuilder):
     """GeneratorBasedBuilder for the Agro NT supervised learning tasks dataset."""
 
-    BUILDER_CONFIGS = [AgroNtTasksConfig(task=TASK) for TASK in _TASKS]
+    BUILDER_CONFIGS = [AgroNtTasksConfig(task_name=TASK_NAME) for TASK_NAME
+                       in _TASK_NAMES]
 
-    DEFAULT_CONFIG_NAME = _TASKS[0]
+    DEFAULT_CONFIG_NAME = _TASK_NAMES[0]
 
     def _info(self):
 
-        features = datasets.Features(
-            {
-                "sequence": datasets.Value("string"),
-                "name": datasets.Value("string"),
-                "labels": datasets.Value("int8"),
-            }
-        )
+        if self.task_type == 'binary':
+            features = datasets.Features(
+                {
+                    "sequence": datasets.Value("string"),
+                    "name": datasets.Value("string"),
+                    "labels": datasets.Value("int8"),
+                }
+            )
 
         return datasets.DatasetInfo(
             # This is the description that will appear on the datasets page.
@@ -90,8 +98,10 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
 
     def _split_generators(self, dl_manager) -> List[datasets.SplitGenerator]:
 
-        train_file = dl_manager.download_and_extract(self.config.task + "/train.fa")
-        test_file = dl_manager.download_and_extract(self.config.task + "/test.fa")
+        train_file = dl_manager.download_and_extract(
+            os.path.join(self.config.task, self.config.name + "_train.fa"))
+        test_file = dl_manager.download_and_extract(
+            os.path.join(self.config.task, self.config.name + "_test.fa"))
 
         return [
             datasets.SplitGenerator(