Update plant-genomic-benchmark.py
Browse files
plant-genomic-benchmark.py
CHANGED
@@ -44,6 +44,8 @@ _TASK_NAMES = ['poly_a.arabidopsis_thaliana',
|
|
44 |
'lncrna.s_bicolor',
|
45 |
'promoter_strength.leaf',
|
46 |
'promoter_strength.protoplast',
|
|
|
|
|
47 |
'gene_exp.glycine_max',
|
48 |
'gene_exp.oryza_sativa',
|
49 |
'gene_exp.solanum_lycopersicum',
|
@@ -63,6 +65,7 @@ _TASK_INFO = {'poly_a':{'type': 'binary', 'val_set':False},
|
|
63 |
'splicing':{'type': 'binary', 'val_set':False},
|
64 |
'lncrna':{'type': 'binary', 'val_set':False},
|
65 |
'promoter_strength': {'type': 'regression', 'val_set': True},
|
|
|
66 |
'gene_exp':{'type':'multi_regression','val_set':True},
|
67 |
'chromatin_access':{'type':'multi_label','val_set':True},
|
68 |
'pro_seq':{'type':'binary','val_set':True}
|
|
|
44 |
'lncrna.s_bicolor',
|
45 |
'promoter_strength.leaf',
|
46 |
'promoter_strength.protoplast',
|
47 |
+
'terminator_strength.leaf',
|
48 |
+
'terminator_strength.protoplast',
|
49 |
'gene_exp.glycine_max',
|
50 |
'gene_exp.oryza_sativa',
|
51 |
'gene_exp.solanum_lycopersicum',
|
|
|
65 |
'splicing':{'type': 'binary', 'val_set':False},
|
66 |
'lncrna':{'type': 'binary', 'val_set':False},
|
67 |
'promoter_strength': {'type': 'regression', 'val_set': True},
|
68 |
+
'terminator_strength': {'type': 'regression', 'val_set': True},
|
69 |
'gene_exp':{'type':'multi_regression','val_set':True},
|
70 |
'chromatin_access':{'type':'multi_label','val_set':True},
|
71 |
'pro_seq':{'type':'binary','val_set':True}
|