debug

agro-nt-tasks.py

@@ -35,12 +35,12 @@ predicting regulatory features, RNA processing sites, and gene expression values
 # TODO: Add the licence for the dataset here if you can find it
 _LICENSE = ""
 
-_TASK_NAMES =  ['poly_a_arabidopsis_thaliana',
-                'poly_a_oryza_sativa_indica_group',
-                'poly_a_trifolium_pratense',
-                'poly_a_medicago_truncatula',
-                'poly_a_chlamydomonas_reinhardtii',
-                'poly_a_oryza_sativa_japonica_group']
+_TASK_NAMES =  ['poly_a.arabidopsis_thaliana',
+                'poly_a.oryza_sativa_indica_group',
+                'poly_a.trifolium_pratense',
+                'poly_a.medicago_truncatula',
+                'poly_a.chlamydomonas_reinhardtii',
+                'poly_a.oryza_sativa_japonica_group']
 
 
 _TASK_NAME_TO_TYPE = {'poly_a':'binary',
@@ -58,8 +58,7 @@ class AgroNtTasksConfig(datasets.BuilderConfig):
             **kwargs: keyword arguments forwarded to super.
         """
 
-        self.task = "_".join(task_name.split("_")[:2])
-        self.name = "_".join(task_name.split("_")[2:])
+        self.task,self.specie = task_name.split(".")
         self.task_type = _TASK_NAME_TO_TYPE[self.task]
 
         super().__init__(
@@ -109,9 +108,9 @@ class AgroNtTasks(datasets.GeneratorBasedBuilder):
     def _split_generators(self, dl_manager) -> List[datasets.SplitGenerator]:
 
         train_file = dl_manager.download_and_extract(
-            os.path.join('polyadenylation', self.config.name + "_train.fa"))
+            os.path.join(self.config.task, self.config.specie + "_train.fa"))
         test_file = dl_manager.download_and_extract(
-            os.path.join('polyadenylation', self.config.name + "_test.fa"))
+            os.path.join(self.config.task, self.config.specie + "_test.fa"))
 
         return [
             datasets.SplitGenerator(